Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Q5H	18179	2025-02-14	2023-08-09	4.5	4.83	4.50	4.3	0.004	0.82	0.0	0.04	15.49	0.01	2.072	15.56	0.00	3.5	96.5	0.1	0.62	0.66	0.45	—	4.3	0.003	0.77	0.0	0.04	15.54	0.00	2.372	16.29	0.00	3.5	96.4	0.1	0.53	1.87	0.76	0.67	—	9574	1173	7	0	0	0	0	logfile
✔	8TRM	41583	2025-02-13	2023-08-09	2.5	2.56	2.64	2.5	0.003	0.61	0.0	0.05	18.29	0.00	1.909	2.81	1.68	1.4	98.6	0.0	1.52	0.56	0.91	4.39	2.5	0.004	0.64	0.0	0.05	18.66	0.00	1.936	3.27	3.26	1.8	98.2	0.0	1.82	0.34	0.58	0.92	3.96	8814	1113	9	0	6	30	0	logfile
✔	8TR9	41574	2025-02-11	2023-08-09	3.2	3.80	3.19	3.6	0.002	0.54	0.0	0.04	13.53	0.00	2.224	9.75	0.00	3.7	96.3	0.0	-0.43	0.85	0.88	3.75	3.6	0.003	0.57	0.0	0.04	15.12	0.00	2.478	7.99	0.84	4.3	95.7	0.0	-0.32	0.60	0.85	0.89	3.96	5442	684	2	1	0	0	0	logfile
✔	8KCW	37112	2025-02-14	2023-08-08	2.77	3.13	2.73	3.1	0.005	0.82	0.0	0.05	18.78	0.01	2.126	5.92	0.18	2.8	97.2	0.0	-4.23	0.60	0.82	3.29	3.1	0.003	0.66	0.0	0.04	15.08	0.00	1.930	5.16	1.43	1.9	98.1	0.0	1.44	2.01	0.59	0.84	3.53	10484	1252	12	0	26	0	0	logfile
✔	8KCX	37113	2025-02-13	2023-08-08	2.96	3.37	2.90	3.3	0.005	0.77	0.0	0.06	20.46	0.00	2.273	4.87	0.39	1.8	98.2	0.0	-2.46	0.59	0.81	2.56	3.3	0.003	0.62	0.0	0.04	16.02	0.00	2.337	4.19	4.12	1.3	98.7	0.0	1.29	1.27	0.58	0.82	2.79	9486	1142	12	0	22	0	0	logfile
✔	8TQM	41508	2025-02-12	2023-08-07	3.2	3.40	3.14	3.4	0.007	0.92	0.0	0.04	13.43	0.00	1.724	12.07	0.00	2.5	97.5	0.0	2.28	0.62	0.78	2.62	3.4	0.003	0.55	0.0	0.04	15.18	0.00	2.324	6.47	0.65	2.9	97.1	0.0	2.29	0.61	0.58	0.81	2.34	7231	843	2	0	7	0	0	logfile
✔	8KCi	37105	2025-02-14	2023-08-07	3.94	4.27	3.89	4.2	0.004	0.67	0.0	0.04	18.61	0.00	2.001	9.47	1.35	10.0	89.8	0.3	-0.20	0.63	0.70	0.56	4.2	0.003	0.67	0.0	0.04	18.60	0.00	2.071	7.39	3.97	9.5	90.5	0.0	0.00	1.30	0.65	0.71	0.45	9515	1203	2	0	4	0	0	logfile
✔	8KC9	37097	2025-02-14	2023-08-06	3.75	4.32	3.88	4.2	0.004	0.79	0.0	0.05	18.98	0.00	2.168	10.18	1.18	4.3	95.3	0.3	0.48	0.62	0.64	1.30	4.2	0.003	0.65	0.0	0.04	18.42	0.00	2.109	6.27	3.15	4.8	95.0	0.3	0.76	1.72	0.68	0.73	1.14	9714	1196	6	0	6	0	0	logfile
✔	8TQ2	41499	2025-02-13	2023-08-06	3.8	3.50	3.80	3.8	0.002	0.55	0.0	0.04	14.16	0.00	2.278	6.09	0.00	2.0	98.0	0.0	0.72	0.67	0.79	2.40	3.8	0.003	0.56	0.0	0.04	16.11	0.00	2.565	5.27	2.16	2.9	97.1	0.0	0.82	0.41	0.67	0.81	1.97	5505	672	4	0	0	0	0	logfile
✔	8KC2	37090	2025-02-11	2023-08-05	2.6	2.24	2.62	2.0	0.005	0.75	0.0	0.05	14.84	0.01	1.829	5.70	0.87	6.9	93.0	0.1	-0.90	0.79	0.81	3.58	2.0	0.004	1.01	1.0	0.05	16.64	0.00	2.039	4.51	1.74	5.5	94.5	0.0	0.00	0.46	0.83	0.85	3.40	6471	790	4	0	5	0	0	logfile
✔	8TPP	41480	2025-02-13	2023-08-04	3.64	3.68	3.65	3.8	0.003	0.53	0.0	0.04	16.55	0.00	2.227	6.28	0.11	2.5	97.5	0.0	2.18	0.76	0.81	1.00	3.8	0.004	0.87	1.0	0.04	17.02	0.00	2.338	4.95	2.60	2.9	97.1	0.0	2.50	0.31	0.77	0.81	0.87	9116	1168	4	0	4	0	0	logfile
✔	8KBY	37087	2025-02-11	2023-08-04	3.23	3.45	3.19	3.5	0.003	0.91	0.0	0.05	14.41	0.00	2.288	12.26	0.00	12.2	87.4	0.4	-4.87	0.50	0.47	2.38	3.4	0.004	0.86	0.0	0.05	15.53	0.00	2.199	11.00	6.91	17.0	83.0	0.0	-5.14	1.75	0.57	0.62	2.85	5050	830	1	0	0	0	0	logfile
✔	8TPN	41478	2025-02-13	2023-08-04	4.07	4.04	4.01	4.0	0.002	0.46	0.0	0.04	15.10	0.00	2.220	5.18	0.00	2.8	97.2	0.0	2.66	0.74	0.81	—	4.0	0.003	0.55	0.0	0.04	15.13	0.00	2.287	5.30	0.11	2.6	97.4	0.0	2.02	0.34	0.75	0.82	—	8612	1102	4	0	4	0	0	logfile
✔	8Q3F	18126	2025-02-11	2023-08-04	3.77	4.64	3.79	4.2	0.005	1.12	0.0	0.07	15.05	0.01	2.339	3.11	0.00	3.1	96.9	0.0	-5.05	0.90	0.81	0.79	4.2	0.002	0.57	0.0	0.04	15.77	0.00	2.624	4.15	0.79	1.9	98.1	0.0	1.44	0.92	0.90	0.81	0.65	4599	578	1	0	0	0	0	logfile
✔	8KBX	37086	2025-02-12	2023-08-04	3.23	3.45	3.22	3.4	0.005	1.10	0.0	0.06	13.38	0.01	1.571	9.65	0.00	9.3	90.2	0.4	-3.61	0.49	0.34	2.38	3.4	0.003	0.76	0.0	0.04	13.91	0.00	2.557	7.00	5.59	12.6	87.4	0.0	-4.17	1.09	0.58	0.57	2.52	6827	1190	2	0	0	0	0	logfile
✔	8KB4	37069	2025-02-11	2023-08-03	3.1	3.80	3.15	3.6	0.004	0.70	0.0	0.04	19.10	0.00	2.151	19.36	0.00	6.1	93.9	0.0	1.68	0.65	0.85	2.49	3.6	0.003	0.59	0.0	0.04	16.21	0.00	2.547	3.69	1.12	4.5	95.5	0.0	2.09	1.24	0.64	0.85	2.10	3367	402	2	0	4	0	0	logfile
✔	8ToH	41452	2025-02-12	2023-08-03	3.29	2.67	3.33	2.3	0.003	0.58	0.0	0.04	14.46	0.00	2.227	13.99	0.00	7.3	92.7	0.0	-1.67	0.68	0.65	1.41	2.2	0.004	0.66	0.0	0.04	16.66	0.00	2.513	12.68	2.32	7.4	92.6	0.0	-1.16	0.47	0.69	0.66	1.41	7022	860	1	0	0	0	0	logfile
✔	8KAE	37008	2025-02-12	2023-08-03	3.18	3.46	3.28	3.5	0.013	1.06	0.0	0.06	13.54	0.01	2.147	7.23	0.00	7.2	92.8	0.0	-1.16	0.61	0.81	3.21	3.5	0.002	0.57	0.0	0.04	14.33	0.00	2.512	4.60	1.43	3.8	96.2	0.0	0.98	1.17	0.62	0.81	2.02	8440	1105	6	0	1	0	0	logfile
✔	8ToK	41454	2025-02-14	2023-08-03	3.84	3.53	3.75	3.8	0.004	0.60	0.0	0.04	17.56	0.01	2.195	4.14	0.00	4.2	95.8	0.0	1.87	0.75	0.81	1.14	3.8	0.003	0.56	0.0	0.04	17.80	0.00	2.235	3.93	2.76	5.1	94.9	0.0	2.18	0.30	0.75	0.82	1.60	9908	1258	4	0	4	0	0	logfile
✔	8KA8	37006	2025-02-11	2023-08-02	2.96	2.36	3.03	2.2	0.003	0.64	0.0	0.04	13.59	0.00	2.017	5.93	0.15	6.2	93.8	0.0	-0.68	0.79	0.79	3.28	2.1	0.004	0.69	0.0	0.04	16.13	0.00	2.254	4.90	3.78	7.0	93.0	0.0	-0.29	0.62	0.81	0.84	3.24	6481	790	5	0	7	0	0	logfile

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