Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8TNY	41429	2025-02-12	2023-08-02	3.55	3.95	3.71	3.9	0.006	0.86	0.0	0.05	17.95	0.00	2.118	12.14	5.02	5.3	94.6	0.2	0.96	0.61	0.81	1.85	3.9	0.003	0.63	0.0	0.04	17.31	0.00	2.568	7.82	6.13	4.0	96.0	0.0	1.79	1.06	0.63	0.83	1.49	8026	1090	4	0	2	0	0	logfile
✔	8Q2L	18112	2025-02-10	2023-08-02	2.2	2.31	2.29	2.3	0.013	2.22	2.0	0.22	14.08	0.01	2.506	1.04	0.00	1.9	98.1	0.0	-2.11	0.40	0.87	5.99	2.3	0.004	0.64	0.0	0.05	19.35	0.00	2.634	2.83	1.85	0.0	100.0	0.0	-1.91	1.24	0.41	0.93	7.16	3300	432	6	0	0	0	0	logfile
✔	8KA8	37006	2025-02-11	2023-08-02	2.96	2.36	3.03	2.2	0.003	0.64	0.0	0.04	13.59	0.00	2.017	5.93	0.15	6.2	93.8	0.0	-0.68	0.79	0.79	3.28	2.1	0.004	0.69	0.0	0.04	16.13	0.00	2.254	4.90	3.78	7.0	93.0	0.0	-0.29	0.62	0.81	0.84	3.24	6481	790	5	0	7	0	0	logfile
✔	8TNX	41428	2025-02-12	2023-08-02	3.03	3.42	3.12	3.4	0.007	0.90	0.0	0.06	16.34	0.02	2.278	7.41	4.12	2.8	96.8	0.4	0.06	0.59	0.80	2.75	3.4	0.003	0.57	0.0	0.04	15.21	0.00	2.611	4.45	2.12	2.1	97.9	0.0	2.01	1.25	0.55	0.81	3.08	8272	1152	4	0	2	0	0	logfile
✔	8Q2K	18111	2025-02-12	2023-08-02	2.88	2.65	2.79	2.8	0.011	1.80	0.0	0.07	10.49	0.01	2.538	0.43	0.00	4.1	95.9	0.0	-1.81	0.28	0.75	5.37	2.8	0.002	0.52	0.0	0.05	17.34	0.00	2.577	0.57	1.26	0.2	99.8	0.0	-1.67	3.25	0.38	0.85	4.59	7032	450	6	0	0	0	3588	logfile
✔	8Q2J	18109	2025-02-11	2023-08-02	2.23	2.02	2.19	2.2	0.011	1.72	0.0	0.08	11.08	0.01	2.490	0.14	0.00	1.8	98.2	0.0	-1.62	0.29	0.75	7.51	2.2	0.004	0.64	0.0	0.05	19.03	0.00	2.468	4.49	1.25	0.9	99.1	0.0	-1.93	2.29	0.43	0.90	7.16	3507	462	6	0	0	0	0	logfile
✔	8Q27	18070	2025-02-12	2023-08-01	2.02	1.98	1.92	2.0	0.011	1.74	0.0	0.08	11.92	0.01	2.517	0.00	1.27	2.3	97.7	0.0	-1.63	0.21	0.69	8.02	2.0	0.004	0.61	0.0	0.05	17.05	0.00	2.446	0.86	0.51	4.1	95.9	0.0	-1.60	1.19	0.34	0.88	7.19	7002	453	6	0	0	0	3567	logfile
✔	8K9i	36987	2025-02-12	2023-08-01	4.2	2.69	4.05	3.8	0.018	1.41	0.0	0.10	15.71	0.01	2.377	21.05	5.67	6.7	93.3	0.0	-1.38	0.61	0.54	—	3.8	0.003	0.69	0.0	0.04	14.60	0.00	2.486	13.79	0.00	2.8	97.2	0.0	1.01	1.27	0.64	0.59	—	7657	939	4	0	0	0	0	logfile
✔	8K8T	36961	2025-02-14	2023-07-31	3.8	2.70	—	3.7	0.014	0.97	0.0	0.05	18.59	0.01	2.197	15.42	2.79	4.4	95.6	0.0	0.47	0.69	0.72	1.42	3.0	0.004	0.78	0.0	0.04	19.38	0.00	2.454	13.50	5.13	5.1	94.9	0.0	0.92	0.56	0.70	0.72	1.30	9926	1210	4	0	0	0	0	logfile
✔	8K8J	36951	2025-02-12	2023-07-30	2.88	3.12	—	3.1	0.004	0.58	0.0	0.04	15.12	0.00	2.190	9.34	0.11	5.3	94.7	0.0	0.30	0.66	0.84	3.80	3.1	0.003	0.58	0.0	0.04	17.03	0.00	2.586	7.68	2.48	4.3	95.7	0.0	0.60	0.37	0.65	0.84	3.40	8155	1031	6	0	1	0	0	logfile
✔	8Q15	18060	2025-02-14	2023-07-30	3.6	3.88	3.67	3.8	0.003	0.52	0.0	0.03	26.64	0.00	2.160	7.98	1.27	2.1	97.9	0.0	2.99	0.73	0.75	0.81	3.8	0.004	0.57	0.0	0.03	27.62	0.00	2.127	8.31	2.72	3.7	96.3	0.0	2.84	0.50	0.72	0.79	0.78	10167	671	10	238	0	0	0	logfile
✔	8K88	36947	2025-02-11	2023-07-29	2.6	2.26	2.70	2.1	0.002	0.58	0.0	0.04	20.29	0.00	1.973	7.12	0.96	2.4	97.6	0.0	1.49	0.83	0.85	3.70	2.1	0.003	0.56	0.0	0.04	20.13	0.00	1.975	6.81	1.93	2.8	97.2	0.0	1.38	0.35	0.83	0.85	3.58	6686	726	5	44	1	0	0	logfile
✔	8TMA	41382	2025-02-10	2023-07-29	3.2	3.37	3.02	3.3	0.004	0.68	0.0	0.05	12.06	0.01	2.324	3.32	0.00	4.0	95.8	0.2	-1.56	0.79	0.82	3.66	3.3	0.003	0.68	0.0	0.04	14.94	0.00	2.525	4.26	2.26	4.5	95.5	0.0	-0.53	2.04	0.80	0.84	3.71	3254	410	3	0	0	0	0	logfile
✔	8TM1	41374	2025-02-11	2023-07-27	2.79	2.95	2.77	3.0	0.003	0.67	0.0	0.05	12.21	0.01	2.313	2.95	0.00	3.4	96.6	0.0	-1.40	0.76	0.81	4.05	2.9	0.004	0.70	0.0	0.05	16.66	0.00	2.508	3.51	2.04	4.1	95.9	0.0	-0.56	1.18	0.79	0.86	4.08	4536	569	4	0	0	0	0	logfile
✔	8TLM	41370	2025-02-11	2023-07-27	2.9	3.41	2.91	3.3	0.003	0.49	0.0	0.04	11.71	0.00	2.057	4.62	0.00	2.8	97.2	0.0	1.36	0.71	0.81	3.76	3.3	0.004	0.61	0.0	0.04	15.03	0.00	2.421	5.27	2.30	3.1	96.9	0.0	1.17	0.44	0.71	0.83	3.10	5400	696	3	0	0	0	0	logfile
✔	8K7T	36941	2025-02-13	2023-07-27	3.71	3.98	3.77	4.0	0.005	0.85	5.0	0.05	18.71	0.00	2.026	12.17	0.61	6.2	93.5	0.4	0.17	0.66	0.73	1.27	4.0	0.004	0.85	0.0	0.05	16.84	0.00	2.494	12.11	3.65	7.0	92.7	0.3	-0.25	0.81	0.69	0.78	1.83	8948	1084	13	0	23	0	0	logfile
✔	8K7R	36939	2025-02-11	2023-07-27	3.56	3.77	3.54	3.8	0.006	0.77	0.0	0.05	20.11	0.01	2.173	8.58	0.43	7.9	91.8	0.3	0.22	0.67	0.77	1.70	3.8	0.005	0.74	0.0	0.05	17.29	0.00	2.497	7.40	1.72	9.7	90.0	0.3	-0.23	0.39	0.69	0.80	1.90	6472	782	9	0	21	0	0	logfile
✔	8K7S	36940	2025-02-11	2023-07-27	3.51	3.68	3.44	3.7	0.002	0.53	0.0	0.04	8.56	0.00	2.263	8.04	0.95	7.4	92.2	0.4	0.24	0.65	0.67	0.85	3.7	0.003	0.73	0.0	0.05	14.58	0.01	2.517	9.26	4.19	7.9	91.3	0.8	-0.44	0.83	0.70	0.75	1.41	6645	800	9	0	18	0	0	logfile
✔	8K77	36935	2025-02-12	2023-07-26	3.11	3.30	—	3.4	0.008	0.99	0.0	0.05	16.52	0.00	2.160	9.40	0.00	3.3	96.7	0.0	0.80	0.60	0.79	2.09	3.4	0.003	0.51	0.0	0.04	16.56	0.00	2.492	5.16	2.62	3.0	97.0	0.0	1.14	0.38	0.59	0.81	2.39	8192	1012	4	0	6	0	0	logfile
✔	8TLD	41367	2025-02-11	2023-07-26	3.6	2.48	3.50	2.2	0.005	0.73	0.0	0.04	17.43	0.01	2.181	12.14	0.60	3.8	95.8	0.4	-0.17	0.71	0.67	1.19	2.2	0.003	0.65	0.0	0.04	17.92	0.00	2.532	9.19	4.98	2.9	96.7	0.4	0.19	0.35	0.72	0.68	1.18	5982	731	7	0	5	0	0	logfile

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