Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8TiF	41286	2025-02-10	2023-07-19	3.89	3.95	3.71	4.1	0.005	0.55	0.0	0.04	17.04	0.00	2.317	8.78	1.02	1.6	98.4	0.0	0.15	0.23	0.85	1.30	4.1	0.004	0.54	0.0	0.04	17.08	0.00	2.619	4.39	5.10	1.6	98.4	0.0	0.67	0.30	0.22	0.85	3.19	889	131	1	0	0	0	0	logfile
✔	8TiB	41283	2025-02-10	2023-07-19	3.47	3.73	3.31	3.7	0.003	0.62	0.0	0.05	16.69	0.00	2.328	7.86	0.34	6.2	93.8	0.0	-1.60	0.32	0.87	1.51	3.7	0.002	0.50	0.0	0.04	16.68	0.00	2.487	6.77	5.10	5.2	94.6	0.3	-0.75	0.26	0.31	0.87	1.67	2667	393	3	0	0	0	0	logfile
✔	8Ti8	41281	2025-02-12	2023-07-19	2.9	3.56	2.95	3.4	0.003	0.46	0.0	0.04	8.83	0.00	2.277	1.89	0.66	1.7	98.3	0.0	2.48	0.88	0.91	2.40	3.4	0.003	0.47	0.0	0.04	12.76	0.00	2.442	2.27	0.33	1.7	98.3	0.0	2.52	0.49	0.85	0.89	2.26	7887	976	4	0	0	0	0	logfile
✔	8PVV	17973	2025-02-11	2023-07-18	2.81	3.06	2.84	3.0	0.004	0.63	0.0	0.05	18.01	0.01	1.707	10.54	0.33	2.6	97.4	0.0	0.55	0.79	0.81	3.73	3.0	0.004	0.61	0.0	0.05	19.02	0.00	1.889	11.52	2.64	2.3	97.7	0.0	0.72	1.16	0.81	0.83	2.82	6477	656	9	50	1	36	0	logfile
✔	8K3T	36859	2025-02-14	2023-07-17	3.57	4.21	3.75	4.1	0.009	0.93	0.0	0.05	15.00	0.00	2.225	12.40	1.12	4.5	95.5	0.0	0.41	0.60	0.77	1.00	4.1	0.004	0.60	0.0	0.04	15.72	0.00	2.138	8.64	2.35	3.1	96.9	0.0	1.78	1.20	0.58	0.75	0.52	9410	1254	4	2	6	0	0	logfile
✔	8K3Z	36869	2025-02-13	2023-07-17	2.81	2.96	2.75	2.9	0.003	0.62	0.0	0.04	17.24	0.00	2.284	7.59	3.48	4.3	95.7	0.0	0.05	0.63	0.87	3.75	2.9	0.003	0.55	0.0	0.04	16.99	0.00	2.519	4.11	2.13	4.2	95.8	0.0	0.73	1.24	0.70	0.90	3.47	9536	1217	6	0	0	0	0	logfile
✔	8K4B	36882	2025-02-13	2023-07-17	3.9	4.47	4.31	4.4	0.007	1.40	0.0	0.07	15.60	0.01	2.010	8.38	0.91	7.0	92.8	0.2	-3.82	0.66	0.75	1.21	4.4	0.003	0.82	0.0	0.04	16.79	0.00	1.951	11.69	3.13	6.1	93.9	0.0	-0.62	1.80	0.68	0.79	1.21	8918	1126	4	0	4	0	0	logfile
✔	8K3U	36861	2025-02-13	2023-07-17	3.06	3.51	3.21	3.5	0.009	1.07	0.0	0.06	16.05	0.00	2.072	18.03	0.73	5.9	94.0	0.2	-1.45	0.55	0.67	2.06	3.5	0.004	0.63	0.0	0.04	16.05	0.00	2.071	8.57	2.80	3.1	96.7	0.2	0.33	1.60	0.49	0.66	1.32	8914	1194	4	2	8	0	0	logfile
✔	8K44	36872	2025-02-11	2023-07-17	3.8	4.00	3.81	3.9	0.003	0.53	0.0	0.04	10.43	0.00	2.227	14.98	0.41	1.8	98.2	0.0	0.62	0.65	0.80	2.30	3.9	0.003	0.78	0.0	0.04	14.69	0.00	2.479	11.88	5.10	1.6	98.4	0.0	-0.01	0.64	0.66	0.81	1.82	6360	840	3	0	0	0	0	logfile
✔	8PVF	17964	2025-02-14	2023-07-17	2.9	2.56	2.92	3.1	0.010	1.80	4.0	0.09	14.89	0.01	2.413	0.60	1.12	4.2	95.5	0.3	-1.16	0.54	0.80	4.62	3.1	0.003	0.58	0.0	0.05	16.67	0.00	2.612	5.06	2.42	2.9	96.8	0.3	0.26	1.95	0.67	0.87	5.14	10140	1348	8	0	4	0	0	logfile
✔	8K3X	36864	2025-02-14	2023-07-17	2.86	3.04	2.99	3.1	0.012	0.94	0.0	0.06	12.85	0.01	2.196	4.37	0.20	5.2	94.8	0.0	-0.82	0.56	0.78	2.78	3.1	0.002	0.51	0.0	0.04	14.97	0.00	2.429	3.82	1.49	2.2	97.8	0.0	1.94	1.22	0.56	0.80	2.59	10386	1386	4	0	2	0	0	logfile
✔	8THR	41269	2025-02-10	2023-07-17	3.12	2.56	3.14	3.6	0.012	1.89	1.0	0.11	13.08	0.01	2.537	4.34	0.96	2.1	97.9	0.0	-3.14	0.77	0.75	2.62	3.6	0.005	0.92	0.0	0.05	15.31	0.01	2.481	12.20	2.88	4.2	95.8	0.0	-0.50	1.05	0.76	0.73	1.66	2937	389	2	0	1	0	0	logfile
✔	8THJ	41266	2025-02-14	2023-07-16	2.99	3.55	3.03	3.4	0.003	0.52	0.0	0.04	14.89	0.00	1.983	5.25	0.88	2.6	97.4	0.0	2.86	0.76	0.87	3.55	3.4	0.003	0.56	0.0	0.04	15.72	0.00	2.313	3.63	1.56	2.0	98.0	0.0	2.98	0.80	0.73	0.86	3.03	9642	1230	4	0	8	0	0	logfile
✔	8THi	41265	2025-02-14	2023-07-16	3.36	3.84	3.37	3.7	0.003	0.51	0.0	0.04	13.99	0.00	2.209	3.02	0.29	1.8	98.2	0.0	2.97	0.71	0.80	1.36	3.7	0.002	0.58	0.0	0.04	15.36	0.00	2.312	4.65	1.67	2.1	97.9	0.0	2.91	1.23	0.72	0.84	1.55	9519	1224	4	0	4	0	0	logfile
✔	8K3J	36853	2025-02-13	2023-07-16	3.3	3.53	3.52	3.4	0.004	0.69	0.0	0.05	20.46	0.00	2.138	8.54	0.31	4.7	95.1	0.2	-0.34	0.80	0.79	2.17	3.4	0.003	0.71	0.0	0.05	17.76	0.00	2.336	5.43	5.69	4.8	95.0	0.2	-0.41	0.39	0.80	0.77	2.35	9108	1148	8	0	16	0	0	logfile
✔	8K3P	36855	2025-02-14	2023-07-16	3.64	4.09	3.71	4.0	0.010	0.98	0.0	0.07	15.32	0.00	2.293	9.47	3.22	4.5	95.5	0.0	0.23	0.64	0.79	1.60	4.0	0.002	0.52	0.0	0.04	15.36	0.00	2.581	6.26	2.47	2.8	97.2	0.0	2.10	1.66	0.65	0.81	1.77	9906	1320	4	0	4	0	0	logfile
✔	8K3i	36852	2025-02-12	2023-07-15	2.83	2.47	2.67	2.7	0.007	0.67	0.0	0.04	13.37	0.01	2.060	6.04	0.00	2.8	97.2	0.0	0.64	0.74	0.87	4.43	2.8	0.002	0.50	0.0	0.04	15.59	0.00	2.642	4.39	1.32	2.1	97.9	0.0	1.80	0.90	0.73	0.88	3.33	7372	960	2	0	0	0	0	logfile
✔	8K3H	36851	2025-02-12	2023-07-15	2.86	2.80	2.67	2.8	0.003	0.52	0.0	0.04	15.58	0.00	2.237	4.01	0.00	2.1	97.9	0.0	0.44	0.76	0.89	3.98	2.8	0.003	0.53	0.0	0.04	15.56	0.00	2.559	2.86	0.92	1.8	98.2	0.0	1.46	0.28	0.77	0.90	3.94	7460	960	4	0	2	0	0	logfile
✔	8K2X	36842	2025-02-13	2023-07-14	3.2	3.52	3.20	3.4	0.003	0.57	0.0	0.04	16.75	0.00	2.283	9.17	0.00	4.6	95.4	0.0	0.69	0.83	0.89	2.38	3.4	0.006	0.66	0.0	0.04	17.39	0.00	2.491	6.13	4.05	5.1	94.9	0.0	0.57	0.27	0.84	0.90	2.46	8900	1138	7	0	1	0	0	logfile
✔	8K2W	36841	2025-02-11	2023-07-14	3.0	3.14	2.99	3.2	0.007	0.90	0.0	0.04	15.07	0.02	2.294	5.99	0.00	4.2	95.8	0.0	0.73	0.56	0.80	2.41	3.2	0.003	0.63	0.0	0.04	16.21	0.00	2.526	5.67	2.57	4.8	95.2	0.0	0.97	0.47	0.54	0.81	1.73	3143	386	3	0	4	0	0	logfile

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