Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8K34	36843	2025-02-12	2023-07-14	2.81	3.42	2.84	3.2	0.004	0.74	0.0	0.04	17.75	0.00	2.000	16.66	2.07	3.9	96.1	0.0	-0.23	0.68	0.68	1.79	3.2	0.003	0.66	0.0	0.04	18.08	0.00	2.007	13.60	2.98	3.8	96.2	0.0	-0.10	1.60	0.68	0.68	1.29	7187	863	4	4	1	0	0	logfile
✔	8TGN	41242	2025-02-11	2023-07-12	3.3	2.50	3.28	2.9	0.005	0.97	0.0	0.05	18.68	0.01	2.195	28.85	0.49	1.3	98.5	0.1	0.16	0.71	0.73	1.69	2.9	0.003	0.75	0.0	0.04	17.61	0.01	2.558	11.47	4.58	2.3	97.7	0.0	1.38	0.36	0.72	0.72	1.64	5745	761	4	0	2	0	0	logfile
✔	8TGK	41239	2025-02-11	2023-07-12	3.7	2.41	3.64	2.2	0.005	0.87	1.0	0.05	17.76	0.01	2.204	20.27	0.81	1.7	97.6	0.7	0.74	0.76	0.78	1.52	2.9	0.005	1.15	1.0	0.04	16.53	0.01	2.368	8.26	3.90	2.8	97.2	0.0	1.73	0.43	0.77	0.77	2.07	5772	766	4	0	2	0	0	logfile
✔	8TGG	41235	2025-02-11	2023-07-12	3.6	2.40	3.59	2.2	0.006	0.86	0.0	0.05	18.10	0.01	2.212	22.24	0.49	2.0	97.9	0.1	0.53	0.72	0.72	1.84	2.2	0.004	0.67	0.0	0.04	16.78	0.00	2.569	7.33	4.61	2.7	97.3	0.0	1.88	0.97	0.73	0.73	1.69	5717	758	4	0	2	0	0	logfile
✔	8K25	36828	2025-02-14	2023-07-12	3.4	3.65	3.55	3.6	0.005	1.14	0.0	0.06	18.39	0.01	2.271	7.89	0.69	7.2	92.8	0.1	-3.18	0.63	0.52	0.39	3.6	0.003	0.69	0.0	0.04	18.39	0.00	2.516	14.66	3.56	7.6	92.3	0.1	-0.91	0.53	0.65	0.56	1.03	9961	1330	8	34	0	0	0	logfile
✔	8TGM	41241	2025-02-11	2023-07-12	3.5	2.42	3.47	2.2	0.007	0.97	1.0	0.05	17.99	0.01	2.279	14.16	0.65	3.0	96.8	0.1	0.63	0.77	0.80	2.24	2.2	0.004	0.68	0.0	0.04	16.76	0.01	2.498	5.94	4.07	2.5	97.5	0.0	2.01	0.36	0.77	0.78	1.73	5826	768	4	0	2	0	0	logfile
✔	8PR4	17834	2025-02-14	2023-07-12	3.5	4.03	3.51	3.8	0.008	1.33	0.0	0.07	17.21	0.01	2.309	4.25	1.00	7.5	92.4	0.2	-3.40	0.81	0.80	1.91	3.8	0.003	0.62	0.0	0.04	16.51	0.00	2.372	6.87	3.34	5.0	95.0	0.0	0.44	0.39	0.82	0.82	1.95	9494	1322	8	0	4	0	0	logfile
✔	8TGi	41237	2025-02-11	2023-07-12	3.4	2.43	3.43	2.2	0.004	0.76	0.0	0.05	18.04	0.01	2.208	22.01	0.81	1.1	98.9	0.0	0.60	0.74	0.75	1.85	2.2	0.003	0.70	0.0	0.04	16.52	0.00	2.523	7.56	2.44	1.6	98.4	0.0	1.95	0.76	0.75	0.76	1.61	5786	767	4	0	2	0	0	logfile
✔	8TGH	41236	2025-02-11	2023-07-12	3.5	2.39	3.45	2.2	0.007	0.81	0.0	0.05	17.21	0.01	2.269	16.16	0.98	2.5	97.5	0.0	0.62	0.79	0.82	2.22	2.2	0.005	1.13	1.0	0.04	16.29	0.01	1.843	5.53	4.23	2.6	97.4	0.0	2.07	0.73	0.79	0.80	2.09	5778	767	4	0	2	0	0	logfile
✔	8K26	36829	2025-02-14	2023-07-12	3.6	3.91	3.69	3.7	0.006	1.31	1.0	0.07	17.74	0.01	2.221	8.76	0.71	5.7	94.1	0.2	-3.00	0.69	0.54	-0.04	3.7	0.004	0.81	0.0	0.05	17.49	0.00	2.402	19.64	2.03	5.8	94.0	0.2	-0.96	1.10	0.71	0.58	0.55	10549	1336	6	0	0	0	0	logfile
✔	8TGJ	41238	2025-02-11	2023-07-12	3.5	2.56	3.51	2.9	0.004	0.78	0.0	0.05	18.01	0.01	2.292	25.32	0.66	1.6	98.4	0.0	0.58	0.71	0.72	1.85	2.9	0.003	0.74	0.0	0.04	17.04	0.01	2.554	9.10	4.75	2.3	97.7	0.0	1.49	0.37	0.72	0.72	1.32	5720	761	3	0	1	0	0	logfile
✔	8TGL	41240	2025-02-11	2023-07-12	3.4	2.34	3.39	3.3	0.005	0.80	0.0	0.04	17.87	0.01	2.218	30.23	0.82	1.7	98.1	0.1	1.90	0.73	0.71	2.60	2.1	0.005	0.78	0.0	0.05	16.49	0.01	2.455	12.25	3.11	2.8	97.2	0.0	1.30	0.95	0.74	0.74	2.82	5734	760	4	0	2	0	0	logfile
✔	8K1V	36805	2025-02-11	2023-07-11	3.48	3.80	3.32	3.9	0.001	0.31	0.0	0.03	13.71	0.00	2.283	2.43	0.00	0.6	99.4	0.0	5.96	0.54	0.76	1.54	3.9	0.003	0.57	0.0	0.04	14.71	0.00	2.498	4.74	2.45	1.7	98.3	0.0	4.74	0.75	0.54	0.79	2.29	4059	484	6	0	11	2	0	logfile
✔	8K20	36808	2025-02-13	2023-07-11	3.7	4.39	3.57	3.7	0.003	0.60	0.0	0.04	14.08	0.00	2.100	14.06	0.00	2.8	97.2	0.0	0.88	0.82	0.64	0.83	3.8	0.003	0.62	0.0	0.04	15.86	0.00	2.105	12.51	1.75	3.1	96.9	0.0	0.49	0.95	0.82	0.66	0.76	9356	1209	7	0	1	0	0	logfile
✔	8K1N	36796	2025-02-12	2023-07-11	3.0	3.28	2.95	3.3	0.008	1.24	6.0	0.07	15.25	0.01	2.218	9.86	0.70	8.5	91.5	0.0	-1.83	0.59	0.82	2.51	3.3	0.004	0.66	0.0	0.04	16.68	0.00	2.411	8.08	3.62	5.1	94.9	0.0	-0.14	1.75	0.62	0.86	2.23	7175	952	4	0	2	0	0	logfile
✔	8K1L	36794	2025-02-14	2023-07-11	3.44	3.80	3.50	3.7	0.004	1.17	0.0	0.05	16.42	0.01	2.067	19.32	0.37	5.9	94.1	0.0	-1.16	0.65	0.85	1.91	3.7	0.003	0.64	0.0	0.04	16.77	0.00	2.588	9.11	2.93	5.8	94.1	0.2	0.25	0.38	0.66	0.84	1.80	10026	1271	3	0	1	0	0	logfile
✔	8K1P	36798	2025-02-12	2023-07-11	3.4	3.64	3.33	3.6	0.007	0.86	0.0	0.05	16.58	0.01	2.062	5.37	0.14	7.6	92.4	0.0	-1.68	0.73	0.88	2.91	3.6	0.004	0.63	0.0	0.04	16.28	0.00	1.964	3.72	1.13	6.6	93.4	0.0	-0.21	0.36	0.68	0.89	2.59	7139	934	6	0	7	0	0	logfile
✔	8K1o	36797	2025-02-12	2023-07-11	2.9	3.14	2.87	3.2	0.007	1.00	0.0	0.05	17.98	0.01	1.945	3.29	0.42	6.0	94.0	0.0	-1.93	0.62	0.85	3.48	3.2	0.003	0.58	0.0	0.04	16.89	0.00	1.990	2.33	1.55	4.5	95.5	0.0	0.41	0.96	0.65	0.88	2.83	7163	937	6	0	6	0	0	logfile
✔	8K1Z	36806	2025-02-11	2023-07-11	3.41	3.55	3.06	3.6	0.002	0.42	0.0	0.03	13.66	0.00	2.241	4.01	0.00	1.1	98.9	0.0	5.04	0.60	0.77	1.90	3.6	0.003	0.60	0.0	0.04	15.54	0.00	2.525	4.50	2.94	1.7	98.3	0.0	4.98	1.32	0.61	0.81	1.41	4059	484	6	0	11	2	0	logfile
✔	8K1M	36795	2025-02-12	2023-07-11	2.9	3.42	2.91	3.3	0.007	1.08	3.0	0.06	14.61	0.01	2.303	4.19	0.42	8.3	91.7	0.0	-1.85	0.62	0.86	3.57	3.3	0.002	0.56	0.0	0.04	15.86	0.00	2.463	4.12	2.09	5.6	94.4	0.0	-0.42	0.47	0.54	0.82	2.82	7148	951	4	0	2	0	0	logfile

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