Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8K1J	36793	2025-02-11	2023-07-11	3.0	3.30	3.06	3.4	0.001	0.34	0.0	0.03	13.84	0.00	2.296	2.67	0.00	0.4	99.6	0.0	5.90	0.58	0.77	0.99	3.3	0.003	0.51	0.0	0.04	14.96	0.00	2.504	2.79	1.23	2.1	97.9	0.0	4.63	0.59	0.62	0.83	1.10	4069	484	6	0	11	12	0	logfile
✔	8K1Q	36799	2025-02-11	2023-07-11	3.68	3.98	3.58	3.9	0.004	0.50	0.0	0.03	14.13	0.00	2.337	4.50	0.25	1.3	98.7	0.0	4.91	0.59	0.76	1.71	4.0	0.003	0.56	0.0	0.04	15.94	0.00	2.540	2.31	2.94	1.7	98.3	0.0	4.67	2.32	0.61	0.81	1.82	4058	484	6	0	8	4	0	logfile
✔	8K0X	36780	2025-02-12	2023-07-10	3.2	3.37	3.16	3.4	0.008	1.04	0.0	0.06	9.78	0.01	2.307	1.16	0.00	7.9	92.1	0.0	-6.65	0.67	0.84	4.34	3.4	0.003	0.62	0.0	0.04	13.97	0.00	2.579	3.49	2.94	5.2	94.8	0.0	-1.70	1.26	0.68	0.86	2.51	8447	1084	3	0	1	0	0	logfile
✔	8K10	36782	2025-02-13	2023-07-10	3.2	3.49	3.28	3.5	0.005	0.72	0.0	0.05	15.77	0.00	2.210	10.91	0.39	2.3	97.7	0.0	0.96	0.65	0.75	2.51	3.5	0.004	0.62	0.0	0.04	16.03	0.00	2.430	7.94	2.84	3.6	96.4	0.0	1.55	0.45	0.63	0.80	2.47	9478	1176	8	0	16	0	0	logfile
✔	8PQ5	17820	2025-02-11	2023-07-10	4.4	4.07	4.39	7.3	0.003	0.69	0.0	0.05	14.88	0.00	2.133	25.49	0.00	9.2	90.8	0.0	-1.84	0.79	0.69	—	7.2	0.003	0.74	0.0	0.05	14.96	0.01	2.472	20.59	0.15	9.2	90.8	0.0	-2.22	1.06	0.80	0.69	—	6300	782	5	0	2	0	0	logfile
✔	8K19	36789	2025-02-11	2023-07-10	3.88	6.15	5.32	4.1	0.014	1.84	2.0	0.10	13.09	0.03	1.496	4.27	0.57	4.7	94.6	0.7	-1.84	0.64	0.53	0.52	3.9	0.003	0.65	0.0	0.04	13.63	0.00	2.491	19.45	0.28	5.7	94.3	0.0	-0.75	2.06	0.71	0.80	0.57	3224	414	3	0	0	0	0	logfile
✔	8K13	36785	2025-02-13	2023-07-10	3.33	3.76	3.47	3.7	0.003	0.58	0.0	0.04	16.51	0.00	2.205	9.59	0.40	2.2	97.8	0.0	0.67	0.62	0.69	1.38	3.7	0.005	0.69	0.0	0.05	17.20	0.00	2.499	9.92	4.85	3.6	96.4	0.0	0.82	2.04	0.58	0.73	1.70	9078	1118	4	0	6	0	0	logfile
✔	8K1B	36791	2025-02-11	2023-07-10	3.47	3.90	3.47	3.8	0.005	0.71	0.0	0.05	16.50	0.01	2.357	10.66	0.85	2.8	97.2	0.0	-1.31	0.65	0.71	2.02	3.8	0.003	0.70	0.0	0.05	16.90	0.00	2.489	9.20	5.56	2.8	97.2	0.0	-0.45	2.04	0.60	0.71	1.86	4176	508	4	0	6	0	0	logfile
✔	8PQ2	17819	2025-02-11	2023-07-10	3.85	4.01	3.65	3.9	0.002	0.51	0.0	0.04	10.37	0.00	2.133	5.53	2.73	8.3	91.7	0.0	-2.04	0.60	0.79	3.14	3.9	0.003	0.56	0.0	0.04	13.10	0.00	2.280	6.03	3.33	8.9	91.1	0.0	-2.07	0.57	0.60	0.80	3.20	5956	390	4	0	1	0	2891	logfile
✔	8K17	36787	2025-02-14	2023-07-10	3.18	3.04	3.15	3.2	0.008	0.74	1.0	0.05	16.98	0.01	1.978	5.31	0.29	4.9	95.1	0.0	0.57	0.71	0.84	2.39	3.2	0.002	0.49	0.0	0.04	17.25	0.00	2.122	4.01	1.36	3.2	96.8	0.0	1.84	0.38	0.66	0.81	2.05	9748	1203	6	0	5	0	0	logfile
✔	8K12	36784	2025-02-11	2023-07-10	3.3	3.67	3.56	3.6	0.005	0.71	0.0	0.05	14.82	0.00	2.209	10.54	0.50	0.9	99.1	0.0	1.25	0.48	0.70	1.60	3.6	0.003	0.70	0.0	0.04	16.53	0.00	2.591	11.70	3.01	2.0	98.0	0.0	2.25	0.97	0.47	0.77	0.76	5592	714	2	0	0	0	0	logfile
✔	8K11	36783	2025-02-11	2023-07-10	3.3	3.50	3.12	3.6	0.004	0.59	0.0	0.06	15.60	0.00	2.215	11.41	0.42	1.5	98.5	0.0	0.27	0.66	0.76	3.40	3.5	0.004	0.58	0.0	0.05	15.32	0.00	2.612	6.45	2.54	3.6	96.4	0.0	0.39	1.79	0.67	0.82	3.30	4402	526	8	0	16	0	0	logfile
✔	8K15	36786	2025-02-14	2023-07-10	2.58	2.79	2.58	2.9	0.009	1.04	0.0	0.06	25.09	0.01	1.850	4.02	0.00	0.0	0.0	0.0	—	0.70	0.81	—	2.8	0.009	0.91	0.0	0.05	24.72	0.01	1.745	4.29	0.00	0.0	0.0	0.0	—	0.29	0.68	0.82	—	10093	0	2	470	2	0	0	logfile
✔	8K1D	36792	2025-02-11	2023-07-10	3.53	3.93	3.62	4.0	0.003	0.71	0.0	0.04	16.89	0.00	2.230	11.65	0.57	1.4	98.6	0.0	1.26	0.46	0.68	0.66	4.0	0.003	0.79	0.0	0.05	17.28	0.00	2.591	10.12	3.26	1.2	98.8	0.0	1.78	1.32	0.45	0.69	0.80	4902	610	2	0	0	0	0	logfile
✔	8K0Z	36781	2025-02-13	2023-07-10	3.7	3.89	3.61	3.9	0.010	1.06	0.0	0.06	9.69	0.01	2.364	1.80	0.00	7.8	92.0	0.2	-6.16	0.68	0.83	2.81	3.9	0.004	0.77	0.0	0.04	14.41	0.00	2.583	3.66	2.38	6.1	93.9	0.0	-0.78	1.39	0.66	0.85	2.03	8484	1092	2	0	0	0	0	logfile
✔	8K0M	36774	2025-02-14	2023-07-09	3.17	3.37	3.20	3.4	0.003	0.57	0.0	0.04	17.60	0.00	1.975	4.27	0.39	4.0	95.8	0.2	0.17	0.67	0.81	2.08	3.4	0.002	0.53	0.0	0.04	17.75	0.00	2.043	3.85	2.86	4.3	95.7	0.0	1.11	0.29	0.65	0.79	1.42	9641	1186	5	0	6	0	0	logfile
✔	8K0B	36759	2025-02-11	2023-07-08	3.56	2.51	3.58	1.9	0.004	0.86	2.0	0.05	17.34	0.00	2.195	14.96	1.28	8.0	92.0	0.0	-0.63	0.53	0.53	0.79	2.0	0.004	0.79	0.0	0.04	17.55	0.00	2.415	11.73	5.27	8.3	91.7	0.0	-0.54	0.42	0.54	0.54	0.54	5689	689	1	0	0	0	0	logfile
✔	8K0F	36763	2025-02-13	2023-07-08	3.37	3.03	3.31	3.4	0.004	0.62	0.0	0.04	18.66	0.00	2.114	4.87	0.00	3.8	96.2	0.1	0.29	0.69	0.80	2.26	3.4	0.003	0.52	0.0	0.04	17.74	0.00	2.147	3.81	2.57	3.6	96.4	0.0	1.43	1.14	0.66	0.79	2.07	9595	1182	5	0	5	0	0	logfile
✔	8K0E	36762	2025-02-12	2023-07-08	3.65	4.35	3.83	4.2	0.004	0.74	0.0	0.04	21.03	0.01	2.098	8.36	0.12	4.2	95.8	0.0	1.22	0.75	0.79	1.50	4.2	0.003	0.66	0.0	0.04	18.99	0.00	2.284	4.98	2.88	3.6	96.4	0.0	1.96	1.15	0.76	0.79	1.52	8300	1008	7	0	9	0	0	logfile
✔	8PPo	17806	2025-02-10	2023-07-07	2.0	2.30	1.95	2.2	0.008	1.20	1.0	0.07	13.41	0.01	2.625	0.29	0.00	6.7	93.3	0.0	0.71	0.58	0.84	6.50	2.2	0.004	0.55	0.0	0.06	14.12	0.00	2.639	0.29	1.04	0.0	100.0	0.0	1.15	0.38	0.50	0.88	5.61	1696	240	16	0	0	0	0	logfile

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