Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8TEH	41186	2025-02-14	2023-07-06	2.3	2.15	2.23	2.3	0.026	0.67	0.0	0.04	22.41	0.01	2.021	2.13	0.43	1.6	98.4	0.0	1.42	0.65	0.82	4.95	2.3	0.003	0.57	0.0	0.04	19.55	0.00	2.568	3.65	1.18	1.2	98.8	0.0	1.92	0.32	0.68	0.87	4.97	9816	1108	6	0	24	214	0	logfile
✔	8TEL	41190	2025-02-12	2023-07-06	2.77	2.48	2.67	2.8	0.004	0.55	0.0	0.04	17.77	0.00	2.075	3.10	1.20	4.2	95.8	0.0	2.33	0.63	0.86	2.14	2.7	0.002	0.50	0.0	0.04	17.97	0.00	2.521	4.05	1.79	3.5	96.5	0.0	2.65	0.91	0.63	0.87	2.47	7806	988	2	0	0	0	0	logfile
✔	8TEN	41192	2025-02-12	2023-07-06	2.98	2.30	2.85	2.8	0.003	0.54	0.0	0.04	17.49	0.00	2.079	3.70	1.07	3.1	96.9	0.0	2.34	0.55	0.82	1.76	2.8	0.003	0.56	0.0	0.04	18.04	0.00	2.562	4.83	2.73	2.8	97.2	0.0	2.58	0.91	0.56	0.83	1.49	7872	996	2	0	0	0	0	logfile
✔	8TEi	41187	2025-02-14	2023-07-06	2.58	2.31	2.45	2.6	0.025	0.69	0.0	0.04	21.72	0.01	2.028	3.45	0.00	1.6	98.4	0.0	2.53	0.66	0.84	3.91	2.6	0.003	0.58	0.0	0.04	19.34	0.00	2.438	5.02	1.39	1.6	98.4	0.0	1.97	0.92	0.66	0.88	3.66	9816	1108	6	0	24	214	0	logfile
✔	8JZP	36750	2025-02-13	2023-07-06	3.45	3.73	3.51	3.8	0.004	0.75	1.0	0.04	14.16	0.01	2.180	7.53	0.73	6.2	93.8	0.0	-0.64	0.67	0.76	2.41	3.8	0.004	0.71	0.0	0.04	15.43	0.00	2.176	9.46	3.90	5.4	94.6	0.0	-0.42	0.99	0.65	0.75	2.10	8622	1199	6	0	0	0	0	logfile
✔	8TEG	41185	2025-02-11	2023-07-06	2.15	2.08	2.12	2.2	0.007	0.74	0.0	0.04	15.68	0.00	2.185	1.68	1.05	1.4	98.6	0.0	1.81	0.63	0.88	4.56	2.2	0.003	0.57	0.0	0.04	16.00	0.00	2.609	2.12	1.48	1.4	98.6	0.0	2.13	1.20	0.63	0.88	4.84	4518	561	4	0	0	88	0	logfile
✔	8TEJ	41188	2025-02-11	2023-07-06	2.55	2.41	2.49	2.5	0.004	0.57	0.0	0.04	17.73	0.00	1.984	2.78	2.87	4.7	95.3	0.0	2.14	0.58	0.85	2.31	2.5	0.002	0.47	0.0	0.04	17.83	0.00	2.488	4.43	1.44	3.5	96.5	0.0	2.53	0.23	0.57	0.85	2.16	3925	494	2	0	0	22	0	logfile
✔	8JZS	36752	2025-02-12	2023-07-06	2.95	3.15	2.92	3.2	0.008	0.93	0.0	0.06	13.27	0.01	2.299	10.90	0.00	4.4	95.2	0.4	0.71	0.69	0.82	1.94	3.2	0.003	0.61	0.0	0.04	14.78	0.00	2.554	4.92	2.26	4.5	95.5	0.0	1.60	1.23	0.63	0.83	2.24	7500	972	4	0	6	0	0	logfile
✔	8TEM	41191	2025-02-12	2023-07-06	3.02	2.66	2.92	3.0	0.003	0.56	0.0	0.04	17.16	0.00	2.092	3.52	1.87	3.6	96.4	0.0	1.84	0.59	0.82	2.19	3.0	0.003	0.57	0.0	0.04	17.12	0.00	2.535	3.58	2.58	2.2	97.8	0.0	2.61	0.50	0.61	0.85	1.95	7992	1010	2	0	0	0	0	logfile
✔	8JZR	36751	2025-02-11	2023-07-06	3.25	3.52	3.29	3.5	0.007	0.77	0.0	0.05	12.74	0.01	2.381	4.82	0.00	3.8	95.7	0.4	0.75	0.64	0.79	2.96	3.5	0.003	0.60	0.0	0.04	15.99	0.00	2.604	6.24	3.41	4.0	96.0	0.0	1.99	1.07	0.58	0.85	2.94	3474	456	2	0	1	0	0	logfile
✔	8JZU	36753	2025-02-11	2023-07-06	3.05	3.36	3.11	3.4	0.004	0.59	0.0	0.04	13.67	0.00	2.206	6.34	0.00	2.1	97.9	0.0	1.94	0.54	0.74	2.37	3.4	0.003	0.59	0.0	0.04	15.89	0.00	2.561	8.86	3.09	2.3	97.7	0.0	1.63	1.65	0.58	0.81	2.63	3741	488	3	0	1	0	0	logfile
✔	8JZX	36754	2025-02-12	2023-07-06	2.5	2.84	2.49	2.9	0.009	1.14	0.0	0.06	11.30	0.01	2.300	8.04	0.28	6.1	93.7	0.2	-6.11	0.65	0.85	4.84	2.9	0.003	0.70	0.0	0.04	13.60	0.00	2.419	6.17	1.14	4.4	95.2	0.4	1.89	1.34	0.60	0.85	3.23	7108	910	4	0	8	0	0	logfile
✔	8JZZ	36755	2025-02-13	2023-07-06	3.31	3.67	3.40	3.7	0.002	0.54	0.0	0.04	13.17	0.00	2.205	9.02	0.24	4.4	95.6	0.0	-0.38	0.61	0.70	2.06	3.7	0.003	0.61	0.0	0.04	15.19	0.00	2.555	7.83	3.12	4.8	95.2	0.0	-0.38	0.97	0.60	0.71	2.35	8680	1198	6	0	0	0	0	logfile
✔	8TER	41198	2025-02-11	2023-07-06	2.59	2.80	2.25	2.8	0.007	0.89	0.0	0.05	18.43	0.01	2.289	10.67	0.00	6.1	93.9	0.0	-4.34	0.66	0.90	5.78	2.8	0.003	0.55	0.0	0.04	19.93	0.00	2.679	2.29	5.17	3.2	96.8	0.0	-3.92	0.85	0.65	0.90	6.57	5780	700	40	0	0	240	0	logfile
✔	8TEQ	41195	2025-02-11	2023-07-06	2.84	3.16	2.42	3.1	0.003	0.56	0.0	0.04	17.77	0.01	2.300	6.75	0.00	2.0	98.0	0.0	-4.35	0.66	0.92	6.41	3.1	0.003	0.60	0.0	0.04	18.69	0.00	2.575	3.76	2.72	4.6	95.4	0.0	-2.96	0.47	0.64	0.93	5.82	6705	825	30	0	0	0	0	logfile
✔	8TEo	41193	2025-02-11	2023-07-06	2.39	2.54	2.25	2.6	0.009	0.97	0.0	0.04	16.68	0.01	2.259	8.59	0.60	2.7	97.3	0.0	2.20	0.63	0.85	4.76	2.5	0.003	0.51	0.0	0.04	14.23	0.00	2.614	5.15	1.51	1.1	98.9	0.0	3.67	0.90	0.65	0.89	5.16	6507	784	12	0	34	9	0	logfile
✔	8PoK	17793	2025-02-12	2023-07-05	3.4	3.50	3.48	3.4	0.007	0.99	4.0	0.06	10.58	0.01	2.115	7.67	0.46	10.5	89.5	0.0	-2.24	0.57	0.78	2.62	3.4	0.003	0.62	0.0	0.04	14.77	0.00	2.441	4.05	2.53	7.6	92.4	0.0	-0.56	0.58	0.62	0.83	2.20	8042	1024	6	0	1	0	0	logfile
✔	8TEA	41179	2025-02-11	2023-07-05	3.4	2.31	—	2.0	0.004	0.74	0.0	0.05	13.18	0.01	2.256	5.80	0.30	4.4	95.6	0.0	-0.71	0.72	0.68	2.75	2.1	0.004	0.65	0.0	0.04	15.06	0.00	2.302	9.67	2.86	5.1	94.9	0.0	-0.63	0.40	0.72	0.69	2.59	6054	780	7	0	0	0	0	logfile
✔	8PoP	17794	2025-02-13	2023-07-05	3.0	2.77	2.97	3.0	0.009	1.44	0.0	0.07	20.03	0.01	2.277	3.16	0.12	0.7	99.3	0.0	-0.51	0.68	0.84	2.21	3.0	0.004	0.65	0.0	0.04	22.02	0.00	2.544	4.48	2.39	0.5	99.5	0.0	3.41	1.39	0.71	0.84	1.67	8929	953	11	56	0	0	0	logfile
✔	8TDo	41172	2025-02-10	2023-07-04	3.1	3.56	2.70	3.5	0.005	0.56	0.0	0.05	13.25	0.01	2.175	16.36	0.00	3.4	96.6	0.0	-3.41	0.50	0.84	5.15	3.4	0.005	0.57	0.0	0.05	15.20	0.00	2.443	8.53	2.22	5.3	94.7	0.0	-3.43	0.34	0.51	0.85	4.79	2892	372	4	0	0	0	0	logfile

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