Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8TDN	41171	2025-02-11	2023-07-04	3.1	3.48	2.78	3.4	0.004	0.54	0.0	0.05	15.57	0.00	2.270	9.57	0.00	7.9	92.1	0.0	-2.86	0.59	0.86	5.30	3.4	0.006	0.62	0.0	0.05	15.74	0.00	2.640	7.77	2.03	8.8	91.2	0.0	-3.08	0.37	0.60	0.88	5.19	3620	465	5	0	0	0	0	logfile
✔	8JZ7	36736	2025-02-13	2023-07-04	2.6	2.26	—	1.9	0.006	0.85	0.0	0.05	13.85	0.01	2.197	15.42	0.61	7.0	93.0	0.0	-2.16	0.75	0.73	2.54	2.9	0.003	0.72	0.0	0.04	16.52	0.00	2.566	7.29	2.13	5.1	94.9	0.0	-0.87	0.50	0.76	0.75	2.07	9042	1144	6	0	1	0	0	logfile
✔	8TDo	41172	2025-02-10	2023-07-04	3.1	3.56	2.70	3.5	0.005	0.56	0.0	0.05	13.25	0.01	2.175	16.36	0.00	3.4	96.6	0.0	-3.41	0.50	0.84	5.15	3.4	0.005	0.57	0.0	0.05	15.20	0.00	2.443	8.53	2.22	5.3	94.7	0.0	-3.43	0.34	0.51	0.85	4.79	2892	372	4	0	0	0	0	logfile
✔	8JY7	36722	2025-02-12	2023-07-03	3.2	2.66	3.25	2.9	0.003	0.60	0.0	0.04	12.18	0.00	2.340	8.29	0.00	3.6	96.4	0.0	1.38	0.60	0.76	2.13	2.9	0.004	0.62	0.0	0.04	13.91	0.00	2.520	7.33	2.61	4.7	95.3	0.0	1.10	1.56	0.65	0.81	2.08	7292	968	4	0	0	0	0	logfile
✔	8JYS	36730	2025-02-11	2023-07-03	4.5	4.28	3.75	4.3	0.004	0.96	0.0	0.05	17.51	0.01	2.197	20.35	1.88	12.7	86.1	1.2	-3.49	0.67	0.71	—	4.4	0.003	0.82	0.0	0.05	13.29	0.01	2.539	13.61	0.00	13.9	84.9	1.2	-3.51	1.22	0.67	0.72	—	3522	441	4	0	0	0	0	logfile
✔	8JY8	36723	2025-02-12	2023-07-03	2.45	2.34	2.57	2.4	0.005	0.69	0.0	0.04	17.05	0.01	2.343	7.64	1.65	2.1	97.9	0.0	0.01	0.60	0.75	3.63	2.4	0.003	0.63	0.0	0.04	16.95	0.01	2.476	7.51	3.02	3.3	96.7	0.0	1.67	0.52	0.68	0.81	4.65	7392	968	8	0	4	0	0	logfile
✔	8JXX	36716	2025-02-13	2023-07-01	3.06	3.38	3.15	3.4	0.007	0.82	0.0	0.05	13.57	0.01	2.173	4.81	0.00	4.8	95.2	0.0	-0.22	0.63	0.79	2.61	3.5	0.003	0.58	0.0	0.04	14.97	0.00	2.541	4.15	1.01	3.7	96.3	0.0	1.11	0.34	0.61	0.78	1.86	8493	1103	6	0	1	0	0	logfile
✔	8JXW	36715	2025-02-12	2023-07-01	3.01	3.30	3.13	3.4	0.006	0.82	0.0	0.05	13.11	0.01	2.092	6.36	0.80	4.2	95.8	0.0	-0.59	0.61	0.77	3.22	3.4	0.003	0.57	0.0	0.04	14.88	0.00	2.489	3.73	2.06	3.5	96.5	0.0	0.89	0.34	0.58	0.75	2.35	8389	1108	6	0	1	0	0	logfile
✔	8JXT	36712	2025-02-12	2023-07-01	3.07	3.35	3.13	3.4	0.005	0.68	0.0	0.04	12.50	0.01	2.228	7.13	0.24	5.4	94.6	0.0	-0.33	0.55	0.69	2.25	3.4	0.004	0.63	0.0	0.04	14.69	0.00	2.513	5.21	1.65	4.5	95.5	0.0	0.33	1.20	0.56	0.73	1.74	8298	1107	6	0	2	0	0	logfile
✔	8JXP	36708	2025-02-11	2023-07-01	2.7	3.07	2.80	3.0	0.009	1.33	6.0	0.09	22.33	0.02	1.644	18.04	24.41	6.9	91.2	1.9	-2.49	0.65	0.81	2.45	3.0	0.004	0.63	0.0	0.04	17.99	0.00	2.605	6.12	2.35	3.1	96.5	0.4	3.16	0.98	0.62	0.88	3.18	6294	786	9	0	21	9	0	logfile
✔	8JXV	36714	2025-02-12	2023-07-01	3.21	2.43	3.22	3.3	0.007	0.83	0.0	0.05	13.11	0.00	2.068	12.58	0.00	5.8	94.2	0.0	-0.75	0.70	0.69	1.54	3.3	0.003	0.64	0.0	0.04	14.89	0.00	2.542	8.07	1.69	3.8	96.2	0.0	0.53	0.35	0.70	0.70	1.14	7935	1040	6	0	1	0	0	logfile
✔	8JXo	36707	2025-02-11	2023-07-01	2.7	3.04	2.81	3.0	0.009	1.33	6.0	0.09	22.33	0.02	1.645	18.53	24.41	6.9	91.2	1.9	-2.50	0.65	0.84	3.36	3.0	0.004	0.62	0.0	0.04	18.48	0.00	2.516	6.45	2.82	2.8	96.8	0.4	2.84	0.92	0.54	0.86	3.65	6294	786	9	0	21	9	0	logfile
✔	8JXR	36710	2025-02-13	2023-07-01	3.57	3.50	3.47	3.6	0.004	0.50	0.0	0.05	12.64	0.00	2.023	4.33	0.11	2.2	97.8	0.0	-1.28	0.56	0.73	1.65	3.6	0.004	0.64	0.0	0.04	15.09	0.00	2.493	6.97	2.61	2.8	97.2	0.0	1.02	1.00	0.64	0.82	2.75	8616	1108	7	0	3	0	0	logfile
✔	8JXG	36700	2025-02-14	2023-06-30	3.2	3.02	3.46	3.3	0.005	0.82	0.0	0.05	19.60	0.02	2.194	7.92	2.17	7.0	92.8	0.2	-0.81	0.68	0.76	1.89	3.3	0.003	0.66	0.0	0.05	16.30	0.00	2.157	5.33	3.30	6.5	93.5	0.0	-0.52	0.36	0.70	0.81	1.53	9810	1187	11	0	58	0	0	logfile
✔	8JXD	36697	2025-02-14	2023-06-30	3.3	3.46	3.42	3.5	0.004	0.66	0.0	0.05	17.24	0.01	2.029	9.03	2.45	6.5	93.5	0.0	-0.71	0.79	0.80	2.36	3.5	0.003	0.65	0.0	0.05	16.11	0.00	2.193	8.91	3.67	6.2	93.8	0.0	-0.68	1.50	0.79	0.81	2.09	10334	1298	12	0	26	0	0	logfile
✔	8JXJ	36703	2025-02-13	2023-06-30	3.9	3.45	3.79	3.5	0.004	0.80	0.0	0.05	17.72	0.01	2.143	9.75	1.79	8.1	91.9	0.0	-1.22	0.73	0.79	2.30	3.5	0.003	0.68	0.0	0.05	15.66	0.00	2.178	7.43	2.79	7.9	92.1	0.0	-1.28	0.38	0.76	0.81	2.06	9158	1140	8	0	26	0	0	logfile
✔	8TCF	41153	2025-02-12	2023-06-30	2.9	3.25	2.96	3.2	0.014	1.40	0.0	0.09	12.16	0.01	1.804	0.72	0.41	3.7	96.2	0.1	0.27	0.75	0.76	3.61	3.2	0.003	0.64	0.0	0.05	14.89	0.00	1.935	6.21	2.03	3.4	96.3	0.2	0.43	0.75	0.74	0.81	2.99	7050	878	9	0	22	0	0	logfile
✔	8JXF	36699	2025-02-14	2023-06-30	3.6	2.90	3.47	3.2	0.005	0.86	0.0	0.06	19.14	0.01	2.150	9.11	1.73	5.6	94.0	0.3	-0.39	0.69	0.77	2.44	3.2	0.004	0.70	0.0	0.05	15.80	0.00	2.117	6.09	3.27	6.3	93.7	0.0	-0.34	0.37	0.71	0.79	2.26	9618	1162	11	0	57	0	0	logfile
✔	8TC3	41151	2025-02-11	2023-06-29	2.57	2.79	2.58	2.8	0.003	0.47	0.0	0.04	18.01	0.00	2.266	7.50	0.46	0.9	99.1	0.0	0.50	0.72	0.88	5.45	2.8	0.004	0.52	0.0	0.04	18.34	0.00	2.596	7.26	2.52	1.5	98.5	0.0	0.76	0.67	0.67	0.86	5.06	4129	542	5	0	1	17	0	logfile
✔	8JWG	36682	2025-02-14	2023-06-29	3.54	4.16	3.72	4.0	0.005	0.72	0.0	0.04	9.43	0.00	2.223	2.05	0.00	7.9	92.1	0.0	-3.71	0.68	0.71	1.76	4.0	0.003	0.68	0.0	0.04	14.47	0.00	2.474	8.26	1.96	6.7	93.3	0.0	-0.71	0.95	0.69	0.75	1.09	9620	1192	2	0	1	0	0	logfile

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