Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9iJY	60645	2025-02-11	2024-06-25	2.64	3.07	2.65	3.0	0.005	0.84	0.0	0.04	16.72	0.00	2.032	15.66	0.29	5.2	94.8	0.0	0.06	0.51	0.76	2.61	3.0	0.003	0.66	0.0	0.04	17.02	0.00	2.598	9.59	2.88	4.1	95.9	0.0	1.24	1.01	0.52	0.77	2.93	6654	784	4	0	4	0	0	logfile
✔	9iJZ	60646	2025-02-11	2024-06-25	2.91	3.32	2.88	3.2	0.006	0.79	0.0	0.04	16.40	0.00	2.031	14.61	0.29	5.7	94.3	0.0	0.55	0.53	0.77	2.36	3.2	0.003	0.60	0.0	0.04	16.37	0.00	2.550	9.29	3.03	4.1	95.9	0.0	1.25	0.36	0.49	0.74	2.60	6654	784	4	0	4	0	0	logfile
✔	9CD9	45464	2025-02-14	2024-06-24	3.2	3.12	3.07	3.3	0.006	0.53	0.0	0.05	15.89	0.00	2.295	9.25	1.10	1.4	98.6	0.0	-3.04	0.72	0.90	5.83	3.3	0.003	0.51	0.0	0.05	16.94	0.00	2.615	4.00	2.11	1.5	98.5	0.0	-3.06	0.43	0.66	0.90	5.59	10989	1606	22	0	0	0	0	logfile
✔	9CDA	45465	2025-02-14	2024-06-24	3.3	3.08	3.30	3.3	0.006	0.59	0.0	0.05	18.16	0.00	1.993	7.61	1.85	5.1	94.9	0.0	-2.65	0.60	0.87	4.03	3.3	0.004	0.60	0.0	0.05	18.58	0.00	2.546	4.79	3.09	6.4	93.6	0.0	-2.58	0.51	0.61	0.90	4.20	9855	1440	18	0	0	0	0	logfile
✔	9iJD	60628	2025-02-13	2024-06-22	2.76	3.23	2.98	3.2	0.006	0.78	1.0	0.05	16.98	0.01	2.181	14.24	1.73	3.1	96.8	0.2	0.20	0.55	0.73	2.81	3.2	0.003	0.60	0.0	0.04	17.68	0.00	2.530	6.96	4.07	3.1	96.9	0.0	0.68	1.15	0.57	0.76	2.41	9371	1227	7	0	1	0	0	logfile
✔	9iJE	60629	2025-02-13	2024-06-22	2.34	2.89	2.69	2.9	0.005	0.70	0.0	0.05	15.99	0.01	2.240	6.01	2.15	2.2	97.8	0.0	1.09	0.60	0.79	3.56	2.9	0.003	0.57	0.0	0.04	16.70	0.00	2.590	2.76	3.17	2.2	97.8	0.0	1.51	0.36	0.58	0.79	3.38	9340	1227	7	0	1	1	0	logfile
✔	9iJ4	60615	2025-02-12	2024-06-21	2.7	3.01	2.81	3.0	0.006	0.91	0.0	0.05	19.91	0.01	1.731	8.91	0.88	6.5	93.3	0.1	-1.89	0.62	0.65	1.52	3.0	0.003	0.65	0.0	0.04	20.19	0.00	2.327	12.53	3.68	5.9	94.0	0.1	-0.85	0.35	0.59	0.68	2.22	7129	755	4	51	1	0	0	logfile
✔	9iJ0	60611	2025-02-11	2024-06-21	3.2	3.59	3.44	3.6	0.006	0.85	0.0	0.05	17.12	0.01	1.758	4.56	0.00	5.8	93.9	0.3	-0.87	0.67	0.73	2.80	3.6	0.003	0.64	0.0	0.04	17.79	0.00	2.045	5.25	1.60	5.4	94.4	0.1	-0.14	1.35	0.60	0.74	2.60	6667	758	4	27	2	0	0	logfile
✔	9iiY	60609	2025-02-11	2024-06-21	3.0	3.31	3.14	3.4	0.003	0.79	0.0	0.08	21.55	0.00	2.103	19.24	0.36	9.0	91.0	0.0	-3.11	0.48	0.46	0.64	3.4	0.004	0.92	0.0	0.08	21.73	0.00	2.331	19.33	5.52	13.3	86.7	0.0	-3.21	0.52	0.52	0.54	1.15	5943	620	3	43	0	0	0	logfile
✔	9iJ1	60612	2025-02-12	2024-06-21	3.2	3.65	3.55	3.7	0.005	1.08	0.0	0.06	20.53	0.01	2.099	7.65	0.88	7.6	92.4	0.0	-2.66	0.59	0.60	1.31	3.7	0.003	0.77	0.0	0.05	20.66	0.01	2.108	17.57	4.98	8.0	92.0	0.0	-1.92	0.46	0.60	0.62	0.93	7056	755	4	47	1	0	0	logfile
✔	9iJ3	60614	2025-02-11	2024-06-21	2.6	2.95	2.79	3.0	0.005	0.99	0.0	0.05	20.45	0.01	1.968	11.06	1.20	8.8	91.1	0.1	-2.04	0.59	0.61	1.17	3.0	0.003	0.68	0.0	0.04	20.34	0.00	2.139	16.07	3.30	9.9	90.0	0.1	-1.25	0.45	0.59	0.67	1.01	7005	738	4	51	1	0	0	logfile
✔	9iJ5	60616	2025-02-12	2024-06-21	2.8	3.11	2.96	3.1	0.008	1.16	1.0	0.06	19.97	0.01	2.267	7.73	1.02	6.3	93.7	0.0	-2.72	0.65	0.69	1.49	3.1	0.004	0.72	0.0	0.05	19.86	0.00	2.499	15.81	4.54	6.3	93.7	0.0	-1.16	0.43	0.60	0.68	1.51	7139	755	4	51	1	0	0	logfile
✔	9iiZ	60610	2025-02-11	2024-06-21	3.8	4.41	3.87	4.3	0.005	1.23	0.0	0.07	22.77	0.01	2.256	10.55	0.59	9.4	90.6	0.0	-3.44	0.71	0.60	-0.85	4.3	0.003	0.87	0.0	0.05	22.65	0.01	2.528	21.10	5.31	7.8	92.0	0.3	-2.25	1.52	0.72	0.62	0.82	4080	377	3	49	0	0	0	logfile
✔	9iJ2	60613	2025-02-11	2024-06-21	3.9	4.21	4.03	4.2	0.005	1.13	0.0	0.06	22.17	0.01	2.273	9.61	0.32	9.8	90.2	0.0	-3.30	0.59	0.49	1.13	4.1	0.003	0.79	0.0	0.04	21.79	0.00	2.546	16.67	3.80	8.4	91.4	0.3	-2.19	1.26	0.60	0.51	0.94	3729	351	3	43	0	0	0	logfile
✔	8ZYQ	60576	2025-02-11	2024-06-18	3.18	3.41	3.17	3.4	0.005	0.59	0.0	0.04	16.95	0.00	2.234	6.78	0.46	2.8	97.2	0.0	1.48	0.57	0.85	2.58	3.4	0.003	0.56	0.0	0.04	16.17	0.00	2.533	5.61	2.88	2.4	97.6	0.0	1.76	0.36	0.56	0.84	2.56	6329	796	5	0	1	0	0	logfile
✔	8ZYW	60581	2025-02-13	2024-06-18	3.43	3.41	3.36	3.6	0.003	0.55	0.0	0.04	17.93	0.00	2.109	8.67	0.32	1.7	98.3	0.0	3.05	0.60	0.78	0.40	3.6	0.003	0.48	0.0	0.04	18.39	0.00	2.493	6.24	3.09	1.7	98.3	0.0	3.86	0.27	0.55	0.78	0.36	8910	1174	10	0	0	4	0	logfile
✔	8ZYZ	60584	2025-02-13	2024-06-18	3.16	2.82	3.05	3.1	0.004	0.53	0.0	0.04	18.05	0.00	2.087	8.66	0.11	2.1	97.9	0.0	3.30	0.60	0.80	1.20	3.1	0.003	0.50	0.0	0.04	18.11	0.00	2.487	8.16	1.70	1.9	98.1	0.0	3.98	1.38	0.56	0.78	1.51	8918	1174	12	0	2	5	0	logfile
✔	8ZYN	60573	2025-02-11	2024-06-18	3.27	3.51	3.26	3.5	0.003	0.56	0.0	0.04	15.25	0.00	2.256	5.78	0.86	2.1	97.9	0.0	1.18	0.59	0.83	1.15	3.5	0.003	0.55	0.0	0.04	15.56	0.00	2.623	5.34	2.88	2.5	97.5	0.0	1.33	0.34	0.59	0.84	1.37	6640	840	4	0	0	0	0	logfile
✔	8ZYo	60574	2025-02-11	2024-06-18	3.29	3.53	3.28	3.5	0.005	0.68	0.0	0.04	17.02	0.00	2.227	8.41	0.46	2.6	97.4	0.0	1.70	0.56	0.85	1.85	3.5	0.003	0.55	0.0	0.04	16.53	0.00	2.540	6.58	4.49	2.3	97.7	0.0	2.07	0.30	0.58	0.85	1.84	6238	785	5	0	1	0	0	logfile
✔	9CAX	45406	2025-02-11	2024-06-18	3.37	3.55	3.28	3.5	0.005	0.92	0.0	0.05	16.47	0.01	2.234	5.04	0.00	4.5	95.3	0.2	-2.36	0.61	0.83	2.06	3.5	0.004	0.70	0.0	0.04	17.16	0.00	2.471	8.85	1.81	4.3	95.5	0.2	1.85	0.50	0.62	0.85	2.40	3611	470	1	0	0	0	0	logfile

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