Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8SV8	40782	2025-02-14	2023-05-15	3.38	3.59	—	3.5	0.004	0.72	0.0	0.04	16.38	0.01	2.199	10.96	0.54	5.5	94.4	0.1	-0.43	0.82	0.85	1.72	3.5	0.003	0.62	0.0	0.04	17.06	0.00	2.372	8.26	2.63	4.9	95.0	0.1	0.30	0.95	0.84	0.88	1.61	10208	1299	5	0	1	0	0	logfile
✔	8SV1	40781	2025-02-11	2023-05-15	3.5	3.48	2.74	3.8	0.003	0.75	0.0	0.05	16.02	0.01	2.219	10.35	0.70	6.2	93.4	0.4	-1.32	0.52	0.70	1.98	3.8	0.003	0.78	0.0	0.05	17.70	0.00	2.381	12.18	4.04	5.0	95.0	0.0	-1.45	0.73	0.47	0.69	1.86	6330	792	6	0	0	0	0	logfile
✔	8P27	17358	2025-02-13	2023-05-15	2.73	2.25	2.73	2.1	0.004	0.55	0.0	0.04	12.49	0.00	1.936	6.22	5.43	8.3	91.7	0.0	-2.06	0.79	0.77	3.73	2.1	0.005	1.05	2.0	0.05	16.56	0.01	2.008	7.94	3.40	6.9	93.1	0.0	-0.95	0.50	0.80	0.79	2.59	8810	1089	4	0	4	0	0	logfile
✔	8P2D	17361	2025-02-13	2023-05-15	2.59	2.21	2.59	2.0	0.002	0.51	0.0	0.04	12.79	0.00	1.968	10.26	4.79	8.1	91.9	0.0	-1.58	0.71	0.64	2.46	2.0	0.003	0.67	0.0	0.05	16.04	0.00	1.979	12.74	2.66	8.1	91.9	0.0	-1.48	1.30	0.73	0.68	1.72	8793	1087	4	0	4	0	0	logfile
✔	8JCZ	36170	2025-02-14	2023-05-12	3.0	3.18	2.98	3.2	0.003	0.57	0.0	0.18	14.97	0.00	2.247	9.10	0.22	4.4	95.6	0.0	0.07	0.65	0.75	2.15	3.2	0.004	0.61	0.0	0.04	13.96	0.00	2.536	6.83	2.16	6.3	93.7	0.0	-0.20	0.41	0.66	0.80	2.27	10540	1504	4	0	4	0	0	logfile
✔	8P1U	17356	2025-02-13	2023-05-12	3.3	3.59	3.29	3.7	0.003	0.56	0.0	0.04	15.31	0.00	2.269	10.25	0.21	4.1	95.9	0.0	0.73	0.63	0.74	1.66	3.6	0.004	0.58	0.0	0.04	16.23	0.00	2.420	8.36	3.26	4.2	95.8	0.0	0.78	0.39	0.59	0.75	1.73	9149	1179	5	0	0	0	0	logfile
✔	8P12	17343	2025-02-14	2023-05-11	3.21	3.94	3.16	3.4	0.008	1.11	0.0	0.05	15.14	0.01	2.114	17.30	0.09	3.9	96.1	0.0	-0.37	0.75	0.68	0.72	3.4	0.003	0.72	0.0	0.04	15.82	0.00	2.512	12.67	1.76	4.2	95.8	0.0	-0.17	1.36	0.75	0.68	0.91	10266	1316	6	0	0	0	0	logfile
✔	8JCD	36158	2025-02-14	2023-05-11	3.14	4.04	3.34	3.7	0.003	0.57	0.0	0.04	28.68	0.00	2.208	9.70	0.69	2.6	97.2	0.1	1.81	0.86	0.85	1.25	3.7	0.004	0.64	0.0	0.04	28.79	0.00	2.396	10.33	2.57	3.5	96.4	0.1	2.62	0.50	0.86	0.84	0.84	10506	704	10	240	0	0	0	logfile
✔	8JC0	36149	2025-02-11	2023-05-10	3.4	3.92	3.63	3.9	0.003	0.65	0.0	0.04	15.87	0.00	2.236	7.32	0.00	5.3	94.7	0.0	-1.74	0.35	0.55	1.77	3.9	0.004	0.61	0.0	0.04	16.54	0.00	2.528	4.88	3.06	6.7	93.3	0.0	-0.87	0.33	0.56	0.75	1.32	4691	589	9	0	1	0	0	logfile
✔	8P0A	17331	2025-02-11	2023-05-10	3.67	3.86	3.69	3.9	0.003	0.65	0.0	0.05	16.31	0.00	2.036	19.63	0.00	5.7	94.3	0.0	-1.96	0.67	0.69	1.79	3.9	0.003	0.75	0.0	0.05	17.53	0.00	1.943	17.21	2.59	6.8	93.2	0.0	-1.41	0.46	0.67	0.69	1.18	5764	718	5	0	4	0	0	logfile
✔	8JCC	36157	2025-02-14	2023-05-10	3.42	4.56	3.52	3.8	0.005	0.60	0.0	0.04	28.83	0.00	2.246	11.14	0.34	2.9	97.1	0.0	1.53	0.85	0.77	1.27	3.8	0.004	0.70	0.0	0.04	28.40	0.00	2.488	14.06	4.62	3.0	97.0	0.0	1.73	1.26	0.89	0.86	0.63	10358	707	10	232	0	0	0	logfile
✔	8STE	40759	2025-02-11	2023-05-10	3.34	3.55	3.29	3.5	0.005	0.69	0.0	0.04	14.38	0.00	1.979	10.65	0.00	6.2	93.8	0.0	-0.32	0.57	0.80	2.57	3.5	0.003	0.63	0.0	0.04	16.20	0.00	2.535	6.65	2.39	5.1	94.9	0.0	0.11	0.47	0.57	0.82	2.44	5816	712	4	0	2	0	0	logfile
✔	8oZC	17304	2025-02-12	2023-05-09	4.0	4.25	4.05	4.0	0.002	0.62	0.0	0.04	13.40	0.00	2.124	14.20	0.00	6.7	92.9	0.3	-1.97	0.70	0.62	—	4.1	0.004	0.82	0.0	0.05	16.12	0.00	2.408	21.09	3.18	9.4	90.4	0.2	-2.35	1.29	0.73	0.67	—	7478	913	2	0	0	0	0	logfile
✔	8oZN	17315	2025-02-12	2023-05-09	3.5	3.24	3.30	3.4	0.015	2.02	0.0	0.09	15.49	0.01	2.254	3.77	0.12	8.5	91.5	0.0	-4.62	0.35	0.74	3.20	3.4	0.002	0.61	0.0	0.04	16.90	0.00	2.599	2.29	1.50	2.4	97.6	0.0	1.55	1.23	0.48	0.84	2.24	8030	1048	6	0	0	0	0	logfile
✔	8JBV	36147	2025-02-11	2023-05-09	3.02	3.16	2.96	3.2	0.008	1.12	1.0	0.06	18.53	0.01	2.235	4.61	14.93	12.5	87.5	0.0	-3.31	0.72	0.75	3.18	3.1	0.005	0.74	0.0	0.05	16.28	0.01	2.356	7.33	5.60	10.0	90.0	0.0	-1.97	1.74	0.72	0.78	2.93	6624	824	4	0	0	0	0	logfile
✔	8oZL	17313	2025-02-11	2023-05-09	3.4	3.28	1.87	3.4	0.012	1.52	0.0	0.10	10.88	0.00	2.574	1.49	0.00	1.2	98.8	0.0	2.33	0.37	0.73	3.42	3.4	0.003	0.51	0.0	0.04	13.79	0.00	2.591	1.56	0.97	0.7	99.3	0.0	2.49	0.42	0.55	0.88	1.86	6675	870	5	0	0	0	0	logfile
✔	8oZM	17314	2025-02-12	2023-05-09	3.4	3.15	3.11	3.4	0.015	1.93	0.0	0.09	15.03	0.01	2.384	3.02	0.00	5.3	94.7	0.0	-4.75	0.37	0.76	3.25	3.4	0.002	0.56	0.0	0.04	15.99	0.00	2.603	1.67	1.15	1.9	98.1	0.0	2.20	1.61	0.49	0.86	2.12	8052	1050	6	0	0	0	0	logfile
✔	8JBF	36144	2025-02-13	2023-05-08	3.0	2.24	2.87	2.0	0.007	0.86	0.0	0.06	12.83	0.01	2.214	4.23	0.22	5.7	94.3	0.0	-5.19	0.78	0.78	4.30	2.0	0.004	0.67	0.0	0.04	15.27	0.00	2.500	8.23	2.52	3.9	96.1	0.0	-0.76	0.44	0.78	0.80	3.72	8784	1145	6	0	0	0	0	logfile
✔	8JBG	36145	2025-02-13	2023-05-08	2.8	2.88	2.76	2.9	0.002	0.54	0.0	0.04	17.54	0.00	2.106	9.23	4.36	3.9	96.1	0.0	-0.10	0.67	0.82	2.97	2.9	0.004	0.92	1.0	0.05	17.67	0.00	2.350	8.53	4.03	4.6	95.4	0.1	0.59	0.32	0.65	0.84	3.10	8750	1139	6	0	0	0	0	logfile
✔	8JAG	36113	2025-02-14	2023-05-06	3.55	3.73	3.59	3.7	0.020	1.81	2.0	0.11	12.74	0.01	1.641	1.92	0.00	3.4	96.5	0.1	0.24	0.55	0.73	2.75	3.7	0.004	0.73	0.0	0.05	14.76	0.00	2.340	8.83	4.00	5.0	94.7	0.3	-0.53	0.87	0.55	0.74	2.31	9772	1244	4	0	5	0	0	logfile

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