Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8SRo	40736	2025-02-11	2023-05-05	3.3	3.43	3.26	3.4	0.003	0.56	0.0	0.03	26.26	0.02	2.348	8.41	0.90	5.3	94.7	0.0	-1.78	0.66	0.78	3.49	3.4	0.004	0.57	0.0	0.03	25.91	0.00	2.543	7.30	2.69	6.5	93.5	0.0	-0.70	0.91	0.65	0.78	2.83	4132	345	8	72	0	0	0	logfile
✔	8JAF	36126	2025-02-11	2023-05-05	3.1	2.18	3.07	1.5	0.008	0.97	0.0	0.05	12.50	0.01	2.237	17.42	0.87	7.3	92.7	0.0	-2.04	0.64	0.56	4.02	1.9	0.003	0.68	0.0	0.04	13.70	0.01	2.361	8.23	1.45	5.0	95.0	0.0	-1.33	0.92	0.66	0.57	2.41	3862	549	4	0	0	0	0	logfile
✔	8SRM	40735	2025-02-11	2023-05-05	4.46	5.07	4.47	4.4	0.003	0.51	0.0	0.03	4.38	0.00	2.233	4.32	0.00	4.0	96.0	0.0	2.57	0.82	0.84	—	4.3	0.005	0.58	0.0	0.04	4.91	0.00	2.443	1.68	0.00	6.4	93.6	0.0	1.00	1.59	0.83	0.86	—	5773	1163	6	0	0	0	0	logfile
✔	8SRP	40737	2025-02-13	2023-05-05	3.7	3.93	3.67	3.7	0.004	0.66	0.0	0.03	28.75	0.01	2.262	9.34	0.47	6.5	93.5	0.0	-1.47	0.74	0.72	2.00	3.7	0.004	0.63	0.0	0.03	28.52	0.00	2.482	10.13	3.27	7.6	92.4	0.0	-0.44	1.24	0.74	0.72	2.86	9516	849	14	214	0	0	0	logfile
✔	8SQU	40713	2025-02-12	2023-05-04	3.28	4.37	3.34	4.0	0.003	0.63	0.0	0.05	18.10	0.00	1.967	11.66	0.00	6.3	93.7	0.0	-0.59	0.75	0.62	1.04	4.0	0.004	0.75	0.0	0.04	20.00	0.00	1.944	15.23	1.46	7.3	92.7	0.0	-0.54	2.16	0.79	0.70	0.93	7761	841	5	41	1	0	0	logfile
✔	8J9o	36112	2025-02-12	2023-05-04	3.4	2.47	3.47	2.1	0.003	0.75	0.0	0.04	13.17	0.01	2.192	7.33	0.00	5.6	94.4	0.0	-1.72	0.73	0.72	2.33	2.1	0.003	0.68	0.0	0.04	15.91	0.00	2.125	8.57	4.23	5.6	94.4	0.0	-0.72	0.46	0.75	0.75	1.79	7441	999	4	0	0	0	0	logfile
✔	8J9N	36111	2025-02-12	2023-05-04	3.5	2.42	3.55	2.2	0.004	0.87	0.0	0.05	13.71	0.01	2.245	6.81	0.00	6.0	94.0	0.0	-1.50	0.74	0.72	2.30	2.2	0.004	0.72	0.0	0.04	15.92	0.00	2.512	9.34	2.87	6.0	93.9	0.1	-0.68	0.38	0.74	0.73	2.14	8483	1107	5	0	0	0	0	logfile
✔	8J9G	36095	2025-02-12	2023-05-03	3.5	4.24	3.47	4.0	0.003	0.52	0.0	0.04	19.06	0.00	1.995	16.89	0.25	5.7	94.3	0.0	-1.46	0.82	0.74	1.02	4.0	0.003	0.71	0.0	0.05	19.50	0.00	1.976	15.34	3.61	6.5	93.5	0.0	-1.31	0.54	0.82	0.73	1.16	7868	898	5	24	1	0	0	logfile
✔	8oXZ	17269	2025-02-12	2023-05-03	3.7	2.53	3.77	3.3	0.005	0.82	0.0	0.05	18.24	0.01	2.167	15.48	1.23	7.0	93.0	0.0	-1.59	0.70	0.66	0.85	2.2	0.004	0.79	0.0	0.05	17.36	0.00	2.439	12.42	5.13	6.4	93.6	0.0	-1.36	0.93	0.72	0.70	1.78	8324	1078	4	0	8	0	0	logfile
✔	8J9K	36110	2025-02-11	2023-05-03	3.5	3.73	3.69	3.9	0.004	0.76	0.0	0.05	15.32	0.00	2.247	7.50	0.95	8.8	91.2	0.0	-2.39	0.76	0.79	2.35	3.9	0.004	0.69	0.0	0.04	15.75	0.00	2.516	8.34	4.05	6.2	93.6	0.2	-1.67	0.46	0.78	0.80	2.16	4284	590	3	0	0	0	0	logfile
✔	8J97	36090	2025-02-11	2023-05-02	3.2	2.37	3.18	1.6	0.007	0.92	1.0	0.05	13.20	0.01	2.266	9.42	0.28	5.8	94.2	0.0	-1.02	0.73	0.71	3.94	1.7	0.005	0.73	0.0	0.05	14.91	0.01	2.551	9.42	2.82	6.2	93.8	0.0	-0.39	0.42	0.73	0.71	3.16	3863	544	4	0	0	0	0	logfile
✔	8SPB	40678	2025-02-11	2023-05-02	3.2	3.73	1.22	3.6	0.003	0.73	0.0	0.05	17.30	0.00	2.227	10.41	1.18	6.9	93.1	0.0	-1.37	0.55	0.77	1.49	3.6	0.004	0.71	0.0	0.04	18.16	0.00	2.474	12.50	3.95	6.5	93.3	0.1	-1.34	0.99	0.48	0.76	1.22	6726	828	6	0	0	0	0	logfile
✔	8J8M	36074	2025-02-12	2023-05-02	3.58	4.41	3.60	4.1	0.005	0.68	0.0	0.05	20.77	0.02	2.203	8.97	0.89	4.7	95.3	0.0	0.67	0.65	0.79	1.13	4.1	0.004	0.75	0.0	0.04	17.66	0.00	2.376	9.24	1.40	5.8	94.2	0.0	1.29	0.48	0.66	0.83	0.96	7362	933	7	0	8	0	0	logfile
✔	8J8Z	36082	2025-02-13	2023-05-02	3.4	3.65	3.51	3.7	0.006	0.73	0.0	0.05	14.13	0.00	2.118	7.54	0.86	6.7	93.3	0.0	-0.49	0.78	0.81	3.58	3.7	0.004	0.66	0.0	0.04	15.36	0.00	2.562	6.67	2.80	4.8	95.2	0.0	-0.13	0.41	0.78	0.81	2.54	8722	1142	8	0	0	0	0	logfile
✔	8J8V	36081	2025-02-13	2023-05-02	3.22	3.39	3.26	3.4	0.005	0.72	0.0	0.05	13.27	0.00	2.228	4.92	0.98	5.1	94.9	0.0	0.23	0.76	0.81	3.25	3.4	0.003	0.58	0.0	0.04	14.62	0.00	2.517	5.24	2.54	5.5	94.5	0.0	0.35	1.14	0.78	0.83	3.22	9437	1205	8	0	0	0	0	logfile
✔	8J91	36084	2025-02-14	2023-05-02	2.9	2.55	2.91	3.0	0.011	1.55	0.0	0.07	26.62	0.02	1.942	5.87	0.18	1.2	98.8	0.0	1.45	0.68	0.76	3.69	2.9	0.003	0.59	0.0	0.03	28.42	0.00	2.470	5.86	1.44	1.8	98.2	0.0	2.70	0.62	0.73	0.83	2.98	9944	678	10	226	0	0	0	logfile
✔	8SPA	40677	2025-02-10	2023-05-02	3.0	3.73	2.75	3.7	0.006	0.75	0.0	0.04	10.82	0.00	2.614	9.26	0.00	4.3	95.7	0.0	-3.14	0.49	0.82	5.78	3.7	0.003	0.71	0.0	0.04	14.97	0.00	2.597	7.85	3.81	3.4	96.6	0.0	-2.72	1.81	0.52	0.86	5.29	1870	245	5	0	0	0	0	logfile
✔	8J8L	36073	2025-02-12	2023-05-02	3.56	4.58	3.58	4.1	0.004	0.69	0.0	0.06	17.56	0.02	2.207	9.58	0.89	4.5	95.5	0.0	0.16	0.67	0.82	1.57	4.1	0.003	0.72	0.0	0.04	16.04	0.00	2.563	8.56	1.52	4.3	95.7	0.0	1.30	0.55	0.66	0.83	1.66	7361	933	7	0	8	0	0	logfile
✔	8oX6	17258	2025-02-12	2023-05-01	2.39	2.99	2.43	2.9	0.004	1.20	0.0	0.04	14.22	0.00	1.906	7.95	0.00	5.3	94.7	0.0	-0.40	0.62	0.74	2.74	2.9	0.003	0.94	0.0	0.04	15.79	0.00	2.081	9.24	2.65	4.7	95.3	0.0	0.35	0.50	0.54	0.69	2.55	7359	903	6	0	7	1	0	logfile
✔	8oX5	17257	2025-02-14	2023-05-01	2.9	3.29	2.97	3.3	0.006	1.13	0.0	0.04	14.36	0.00	1.430	9.98	0.00	6.0	94.0	0.0	-1.86	0.53	0.61	1.95	3.3	0.003	0.93	0.0	0.04	16.07	0.00	2.086	12.76	1.24	4.7	95.3	0.0	-1.38	0.50	0.48	0.61	1.28	9751	1197	6	0	8	1	0	logfile

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