Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8J8H	36070	2025-02-12	2023-05-01	3.4	4.16	3.46	3.9	0.004	0.69	0.0	0.05	20.21	0.00	1.914	16.35	0.61	8.5	91.5	0.0	-1.54	0.82	0.77	1.20	3.9	0.003	0.72	0.0	0.05	20.56	0.00	1.915	13.59	3.19	7.8	92.2	0.0	-1.53	0.39	0.82	0.77	1.40	6868	738	5	39	1	0	0	logfile
✔	8J8J	36071	2025-02-11	2023-05-01	2.76	2.89	2.73	2.9	0.011	1.19	1.0	0.06	19.32	0.00	1.717	4.57	0.00	4.1	95.9	0.0	-2.54	0.65	0.84	2.59	2.9	0.002	0.60	0.0	0.04	17.60	0.00	2.009	4.00	1.79	2.9	97.1	0.0	1.95	0.47	0.65	0.85	2.85	6873	870	6	0	9	0	0	logfile
✔	8oX4	17256	2025-02-14	2023-05-01	3.4	3.52	3.20	3.5	0.005	0.61	0.0	0.04	15.73	0.00	1.898	5.96	0.00	2.8	97.2	0.0	-0.65	0.60	0.76	1.89	3.5	0.006	0.67	0.0	0.04	16.28	0.00	1.844	8.02	1.81	3.1	96.9	0.0	-0.12	0.37	0.64	0.73	1.75	9757	1198	6	0	7	1	0	logfile
✔	8oX5	17257	2025-02-14	2023-05-01	2.9	3.29	2.97	3.3	0.006	1.13	0.0	0.04	14.36	0.00	1.430	9.98	0.00	6.0	94.0	0.0	-1.86	0.53	0.61	1.95	3.3	0.003	0.93	0.0	0.04	16.07	0.00	2.086	12.76	1.24	4.7	95.3	0.0	-1.38	0.50	0.48	0.61	1.28	9751	1197	6	0	8	1	0	logfile
✔	8J87	36062	2025-02-12	2023-05-01	3.42	4.18	3.44	3.5	0.002	0.54	0.0	0.04	10.98	0.00	2.196	7.33	0.00	3.7	96.3	0.0	-0.40	0.79	0.59	0.98	3.5	0.002	0.62	0.0	0.04	13.65	0.00	2.503	8.93	1.07	4.5	95.5	0.0	0.31	1.29	0.81	0.63	0.63	7846	954	2	0	0	0	0	logfile
✔	8J84	36059	2025-02-12	2023-04-30	3.3	4.04	3.29	3.9	0.002	0.58	0.0	0.04	17.27	0.00	2.166	15.78	4.31	5.6	94.4	0.0	-1.01	0.80	0.77	1.33	3.9	0.003	0.63	0.0	0.04	17.42	0.00	2.453	12.09	4.56	5.9	94.1	0.0	-0.97	0.37	0.80	0.76	1.00	7448	906	2	0	0	0	0	logfile
✔	8SoY	40671	2025-02-14	2023-04-30	2.85	2.95	2.81	3.0	0.005	0.73	0.0	0.05	12.14	0.01	2.374	1.86	0.00	2.3	97.7	0.0	-0.69	0.70	0.82	2.95	3.0	0.003	0.54	0.0	0.04	15.30	0.00	2.610	3.11	3.30	1.7	98.3	0.0	0.36	0.28	0.69	0.82	1.57	10074	1422	6	0	0	0	0	logfile
✔	8oWJ	17238	2025-02-10	2023-04-28	3.75	3.75	3.51	4.1	0.012	2.26	0.0	0.11	15.84	0.02	2.610	8.57	3.57	0.0	100.0	0.0	-1.73	0.45	0.61	2.82	4.2	0.005	0.93	0.0	0.05	16.20	0.00	2.567	19.18	0.00	10.3	89.7	0.0	-3.29	2.64	0.49	0.72	3.31	2720	360	10	0	0	0	0	logfile
✔	8oWK	17239	2025-02-10	2023-04-28	3.86	3.20	3.47	4.0	0.013	3.09	0.0	0.12	7.40	0.01	2.508	14.24	3.23	0.0	100.0	0.0	0.74	0.46	0.67	5.30	4.0	0.005	0.81	0.0	0.05	14.02	0.00	2.567	15.58	0.32	3.4	96.6	0.0	-3.26	1.71	0.49	0.73	6.42	3050	400	10	0	0	0	0	logfile
✔	8J7R	36046	2025-02-11	2023-04-28	3.7	3.03	3.63	3.4	0.010	1.34	0.0	0.13	24.43	0.00	2.220	9.29	6.85	2.5	97.5	0.0	-0.13	0.69	0.76	0.98	3.0	0.003	0.59	0.0	0.03	22.77	0.00	2.501	9.57	4.11	2.1	97.9	0.0	2.59	1.40	0.72	0.80	1.58	4034	238	3	97	3	1	0	logfile
✔	8J76	36029	2025-02-11	2023-04-27	3.7	3.88	3.80	3.9	0.007	1.24	4.0	0.09	15.61	0.00	1.926	14.52	0.27	7.0	93.0	0.0	-1.36	0.50	0.72	1.35	4.0	0.003	0.75	0.0	0.04	16.04	0.00	2.501	11.33	3.98	5.3	94.7	0.0	0.43	0.54	0.49	0.72	1.48	3771	493	2	0	3	0	0	logfile
✔	8J7P	36045	2025-02-10	2023-04-27	3.4	3.38	2.86	3.4	0.009	0.81	0.0	0.06	12.54	0.00	2.025	16.13	0.00	15.0	85.0	0.0	-5.75	0.35	0.87	6.32	3.5	0.004	0.66	0.0	0.05	15.12	0.00	2.550	8.75	2.65	8.8	91.2	0.0	-4.72	0.52	0.33	0.87	5.08	3258	405	3	0	0	0	0	logfile
✔	8J75	36027	2025-02-11	2023-04-27	3.6	3.91	3.75	3.9	0.004	0.72	0.0	0.04	20.25	0.00	2.261	16.76	0.00	8.0	91.8	0.2	0.40	0.57	0.69	1.64	3.9	0.003	0.69	0.0	0.04	15.97	0.00	2.415	12.95	4.33	7.6	92.2	0.2	0.78	0.37	0.54	0.71	0.86	3956	515	3	0	4	0	0	logfile
✔	8SNC	40622	2025-02-11	2023-04-27	3.2	3.65	3.41	3.6	0.005	0.60	0.0	0.05	16.85	0.00	2.156	6.81	0.16	4.1	95.9	0.0	-0.17	0.61	0.86	2.85	3.6	0.003	0.83	0.0	0.04	16.78	0.00	2.108	5.36	2.24	4.5	95.5	0.0	0.42	0.23	0.57	0.85	2.79	5927	728	5	0	5	1	0	logfile
✔	8J77	36030	2025-02-11	2023-04-27	3.7	3.92	3.74	4.0	0.006	1.03	0.0	0.06	15.39	0.01	2.149	13.42	0.27	8.6	91.4	0.0	-0.89	0.59	0.78	2.99	4.0	0.003	0.68	0.0	0.04	15.34	0.00	2.579	7.84	3.45	7.2	92.8	0.0	0.23	0.50	0.55	0.76	2.31	3778	493	3	0	4	0	0	logfile
✔	8SNN	40630	2025-02-11	2023-04-27	2.32	2.53	2.32	2.5	0.003	0.64	0.0	0.04	13.12	0.00	2.208	8.84	0.00	6.0	94.0	0.0	0.03	0.66	0.84	4.32	2.5	0.003	0.59	0.0	0.04	16.30	0.00	2.300	5.81	2.85	4.5	95.5	0.0	0.37	1.33	0.70	0.88	4.20	5685	718	3	0	1	0	0	logfile
✔	8J74	36025	2025-02-12	2023-04-27	3.6	3.95	3.85	3.9	0.004	0.73	0.0	0.05	24.91	0.00	2.203	15.84	0.00	6.0	94.0	0.0	0.74	0.63	0.81	1.38	3.9	0.003	0.70	0.0	0.04	16.95	0.00	2.411	12.14	2.77	4.8	95.2	0.0	1.01	0.39	0.62	0.81	1.51	8288	1030	6	0	14	0	0	logfile
✔	8oWD	17234	2025-02-10	2023-04-27	3.28	3.36	1.89	3.4	0.012	2.44	0.0	0.12	21.08	0.00	2.506	5.03	16.13	0.0	100.0	0.0	-0.81	0.49	0.81	4.66	3.4	0.003	0.69	0.0	0.05	17.28	0.00	2.647	11.39	5.16	2.1	97.9	0.0	-3.59	0.70	0.46	0.79	5.72	1525	200	5	0	0	0	0	logfile
✔	8SND	40623	2025-02-11	2023-04-27	3.1	3.43	3.22	3.5	0.007	0.59	0.0	0.04	17.17	0.00	2.254	4.23	0.00	1.6	98.2	0.1	1.20	0.60	0.80	2.97	3.4	0.003	0.49	0.0	0.04	17.01	0.00	2.244	3.32	3.48	2.6	97.3	0.1	1.20	0.29	0.61	0.80	2.84	6090	742	4	0	6	8	0	logfile
✔	8J7M	36042	2025-02-13	2023-04-27	3.1	3.57	3.19	3.5	0.011	1.24	6.0	0.08	18.14	0.01	2.124	16.26	1.27	8.3	91.7	0.0	-2.26	0.63	0.80	4.42	3.5	0.003	0.57	0.0	0.04	16.46	0.00	2.447	6.72	1.74	5.1	94.9	0.0	0.98	0.41	0.61	0.82	3.59	8806	1028	8	0	14	0	0	logfile

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