Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8J6R	36012	2025-02-13	2023-04-26	2.76	2.15	2.84	2.0	0.004	0.62	0.0	0.06	13.55	0.01	2.116	6.13	0.00	2.6	97.4	0.0	0.52	0.76	0.75	3.17	2.0	0.003	0.57	0.0	0.04	15.98	0.00	2.581	5.64	2.31	2.6	97.4	0.0	0.96	1.07	0.78	0.79	3.41	9120	1151	6	0	2	1	0	logfile
✔	8SMM	40591	2025-02-11	2023-04-26	3.2	3.43	3.19	3.4	0.004	0.66	0.0	0.05	16.64	0.01	2.307	7.05	0.31	3.7	96.3	0.0	1.25	0.60	0.78	1.88	3.4	0.004	0.58	0.0	0.04	17.26	0.00	2.522	6.03	3.72	4.3	95.7	0.0	0.68	0.40	0.65	0.82	2.42	5930	738	3	0	0	0	0	logfile
✔	8SMN	40594	2025-02-11	2023-04-26	3.2	3.28	3.05	3.3	0.005	0.61	0.0	0.04	17.26	0.00	2.239	4.61	0.15	3.7	96.3	0.0	0.81	0.68	0.85	2.71	3.3	0.004	0.55	0.0	0.04	16.96	0.00	2.531	4.12	3.51	3.9	96.1	0.0	1.18	0.32	0.68	0.86	3.04	6138	749	5	0	9	1	0	logfile
✔	8J6F	36003	2025-02-11	2023-04-25	3.3	3.50	3.25	3.5	0.009	1.06	0.0	0.06	14.30	0.01	2.208	7.88	0.00	9.8	90.2	0.0	-3.18	0.64	0.73	2.32	3.5	0.004	0.68	0.0	0.04	15.98	0.01	2.576	10.90	2.51	8.8	91.2	0.0	-1.86	0.40	0.64	0.75	2.59	3870	496	5	0	1	0	0	logfile
✔	8J6D	36001	2025-02-12	2023-04-25	3.1	2.42	3.21	3.1	0.004	0.73	0.0	0.04	12.64	0.00	2.133	7.07	0.38	3.8	96.2	0.0	-1.02	0.77	0.76	3.05	3.1	0.003	0.64	0.0	0.04	14.59	0.00	2.542	7.26	2.66	3.7	96.3	0.0	0.09	1.23	0.76	0.75	1.98	8149	1123	6	0	0	0	0	logfile
✔	8J60	33735	2025-02-14	2023-04-24	3.39	3.69	3.37	3.7	0.004	0.81	0.0	0.05	13.93	0.01	2.099	14.77	0.10	4.6	95.1	0.2	-1.00	0.67	0.74	2.77	3.7	0.003	0.69	0.0	0.04	15.73	0.00	2.346	10.96	2.89	5.7	94.3	0.1	-0.72	0.93	0.71	0.78	1.56	9757	1306	4	0	0	0	0	logfile
✔	8J5Y	33733	2025-02-14	2023-04-24	3.07	3.50	3.24	20.0	0.004	0.84	0.0	0.05	13.88	0.01	2.153	12.97	0.00	6.0	93.7	0.3	-1.55	0.08	0.00	0.39	3.4	0.003	0.75	0.0	0.04	15.90	0.00	2.475	12.55	1.64	6.8	93.1	0.1	-1.29	1.35	0.12	0.06	0.57	10905	1389	4	0	0	0	0	logfile
✔	8J62	35999	2025-02-14	2023-04-24	2.5	3.25	2.43	3.0	0.002	0.46	0.0	0.04	18.88	0.00	2.216	9.71	2.91	0.9	99.1	0.0	1.53	0.80	0.83	3.47	3.0	0.004	0.66	0.0	0.04	18.89	0.00	2.503	7.51	4.61	1.2	98.8	0.0	1.71	1.28	0.78	0.86	3.66	10448	1182	14	38	2	0	0	logfile
✔	8J58	35983	2025-02-11	2023-04-21	3.15	3.50	3.24	3.5	0.012	1.61	0.0	0.09	13.09	0.01	2.208	9.64	0.00	2.9	97.1	0.0	-1.50	0.57	0.84	3.11	3.5	0.003	0.70	0.0	0.04	15.18	0.00	2.413	6.23	1.75	2.1	97.9	0.0	3.61	0.94	0.57	0.86	1.53	6666	932	10	0	0	0	0	logfile
✔	8J5D	35985	2025-02-13	2023-04-21	3.0	3.25	3.07	3.2	0.003	0.71	0.0	0.04	15.67	0.00	2.144	12.52	2.43	5.0	95.0	0.0	0.07	0.69	0.73	2.71	3.2	0.004	0.72	0.0	0.04	16.38	0.01	2.413	11.42	3.40	5.8	94.2	0.0	-0.19	0.33	0.68	0.73	2.28	9531	1244	4	0	0	0	0	logfile
✔	8J57	35982	2025-02-12	2023-04-21	2.85	3.16	2.85	3.2	0.013	1.67	0.0	0.09	13.66	0.01	2.397	6.43	0.00	3.0	97.0	0.0	-0.42	0.63	0.88	4.02	3.2	0.003	0.66	0.0	0.04	14.95	0.00	2.587	6.93	0.63	1.5	98.5	0.0	4.31	0.85	0.50	0.83	1.63	7007	943	17	0	7	0	0	logfile
✔	8SL1	40571	2025-02-11	2023-04-20	3.13	3.37	3.20	3.4	0.003	0.61	0.0	0.06	16.40	0.00	2.223	8.71	0.68	5.0	95.0	0.0	-0.41	0.64	0.73	2.11	3.4	0.003	0.60	0.0	0.04	16.74	0.00	2.261	8.09	2.32	5.3	94.7	0.0	0.18	0.36	0.64	0.74	1.92	6608	843	3	0	6	1	0	logfile
✔	8oTF	17177	2025-02-10	2023-04-20	3.3	3.19	3.03	3.4	0.010	1.53	0.0	0.10	16.15	0.01	2.614	4.72	4.35	6.9	93.1	0.0	-4.64	0.49	0.92	5.83	3.4	0.003	0.49	0.0	0.05	16.36	0.00	2.524	3.27	1.45	0.0	100.0	0.0	-0.78	0.49	0.43	0.89	6.50	1350	186	6	0	0	0	0	logfile
✔	8SKS	40566	2025-02-11	2023-04-20	2.91	3.52	2.94	3.4	0.004	0.55	0.0	0.04	11.98	0.00	1.880	7.37	0.00	3.1	96.9	0.0	0.81	0.82	0.84	5.54	3.4	0.003	0.56	0.0	0.04	15.12	0.00	2.037	4.83	2.06	3.6	96.4	0.0	1.29	1.14	0.81	0.83	4.71	6232	792	8	0	4	0	0	logfile
✔	8oT4	17168	2025-02-11	2023-04-20	2.97	3.23	2.90	3.5	0.012	2.30	0.0	0.13	15.19	0.01	2.527	0.00	0.00	0.0	100.0	0.0	-3.85	0.61	0.76	5.14	3.5	0.004	0.78	0.0	0.05	17.90	0.00	2.602	7.32	1.72	1.4	98.6	0.0	-2.54	1.33	0.60	0.79	3.95	3444	444	12	0	0	0	0	logfile
✔	8oT3	17167	2025-02-10	2023-04-20	2.73	3.21	2.60	3.2	0.014	2.33	0.0	0.13	16.88	0.01	2.559	0.00	0.00	0.0	100.0	0.0	-3.27	0.52	0.76	7.19	3.2	0.003	0.72	0.0	0.05	16.62	0.00	2.532	7.05	3.17	3.8	96.2	0.0	-3.41	1.86	0.42	0.79	7.11	2460	336	12	0	0	0	0	logfile
✔	8SL0	40570	2025-02-10	2023-04-20	3.3	4.17	3.09	3.8	0.003	0.62	0.0	0.05	16.00	0.00	2.201	7.96	0.00	8.4	91.2	0.4	-1.67	0.42	0.83	1.40	3.8	0.004	0.66	0.0	0.05	16.54	0.00	2.602	4.83	8.02	11.1	88.5	0.4	-1.21	0.54	0.42	0.83	1.40	1737	228	1	0	0	0	0	logfile
✔	8oT1	17166	2025-02-10	2023-04-20	2.59	3.30	2.25	3.4	0.013	2.40	0.0	0.13	17.35	0.01	2.477	0.00	0.00	0.0	100.0	0.0	-3.37	0.47	0.69	6.48	3.3	0.006	0.84	0.0	0.05	17.11	0.00	2.616	13.69	3.97	6.4	93.6	0.0	-2.10	1.53	0.39	0.74	5.01	2460	336	12	0	0	0	0	logfile
✔	8oTE	17176	2025-02-13	2023-04-20	3.6	3.19	3.39	4.1	0.009	1.70	8.0	0.10	18.70	0.01	2.378	5.19	6.35	15.8	84.2	0.0	-4.51	0.44	0.82	5.34	4.1	0.005	0.78	0.0	0.05	17.32	0.00	2.424	9.69	6.05	9.7	90.3	0.0	-3.88	1.05	0.39	0.77	4.22	8680	1080	8	0	0	0	0	logfile
✔	8oT9	17173	2025-02-11	2023-04-20	3.4	3.23	3.29	3.4	0.009	1.75	0.0	0.10	15.35	0.01	2.415	3.56	6.82	4.1	95.9	0.0	-5.00	0.43	0.90	6.48	3.3	0.002	0.67	0.0	0.05	15.74	0.00	2.611	4.27	1.01	0.9	99.1	0.0	-2.27	1.01	0.39	0.88	5.30	3444	450	6	0	0	0	0	logfile

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