Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8oTD	17175	2025-02-11	2023-04-20	2.6	2.53	2.39	2.8	0.008	1.48	4.0	0.10	16.82	0.01	2.073	4.15	4.76	8.3	91.7	0.0	-3.89	0.48	0.88	6.55	2.8	0.007	0.86	0.0	0.06	16.79	0.00	2.504	9.68	2.58	4.9	95.1	0.0	-3.16	1.06	0.47	0.88	6.17	4340	540	4	0	0	0	0	logfile
✔	8oTJ	17181	2025-02-11	2023-04-20	3.3	3.37	3.07	3.5	0.008	1.80	7.0	0.11	16.48	0.01	2.400	7.78	4.48	12.4	87.6	0.0	-5.06	0.42	0.87	4.78	3.5	0.005	0.77	0.0	0.05	16.45	0.00	2.602	5.39	1.49	5.5	94.5	0.0	-3.02	1.03	0.38	0.83	5.03	4109	539	7	0	0	0	0	logfile
✔	8oTE	17176	2025-02-13	2023-04-20	3.6	3.19	3.39	4.1	0.009	1.70	8.0	0.10	18.70	0.01	2.378	5.19	6.35	15.8	84.2	0.0	-4.51	0.44	0.82	5.34	4.1	0.005	0.78	0.0	0.05	17.32	0.00	2.424	9.69	6.05	9.7	90.3	0.0	-3.88	1.05	0.39	0.77	4.22	8680	1080	8	0	0	0	0	logfile
✔	8oT9	17173	2025-02-11	2023-04-20	3.4	3.23	3.29	3.4	0.009	1.75	0.0	0.10	15.35	0.01	2.415	3.56	6.82	4.1	95.9	0.0	-5.00	0.43	0.90	6.48	3.3	0.002	0.67	0.0	0.05	15.74	0.00	2.611	4.27	1.01	0.9	99.1	0.0	-2.27	1.01	0.39	0.88	5.30	3444	450	6	0	0	0	0	logfile
✔	8oTi	17180	2025-02-11	2023-04-20	2.7	2.46	2.62	2.8	0.012	1.63	0.0	0.10	13.67	0.01	2.388	3.56	5.30	2.7	97.3	0.0	-3.63	0.41	0.92	6.96	2.8	0.004	0.64	0.0	0.05	17.38	0.00	2.604	3.27	4.80	1.1	98.9	0.0	-1.94	1.26	0.38	0.90	5.81	3444	450	6	0	0	0	0	logfile
✔	8SKS	40566	2025-02-11	2023-04-20	2.91	3.52	2.94	3.4	0.004	0.55	0.0	0.04	11.98	0.00	1.880	7.37	0.00	3.1	96.9	0.0	0.81	0.82	0.84	5.54	3.4	0.003	0.56	0.0	0.04	15.12	0.00	2.037	4.83	2.06	3.6	96.4	0.0	1.29	1.14	0.81	0.83	4.71	6232	792	8	0	4	0	0	logfile
✔	8oT3	17167	2025-02-10	2023-04-20	2.73	3.21	2.60	3.2	0.014	2.33	0.0	0.13	16.88	0.01	2.559	0.00	0.00	0.0	100.0	0.0	-3.27	0.52	0.76	7.19	3.2	0.003	0.72	0.0	0.05	16.62	0.00	2.532	7.05	3.17	3.8	96.2	0.0	-3.41	1.86	0.42	0.79	7.11	2460	336	12	0	0	0	0	logfile
✔	8SL0	40570	2025-02-10	2023-04-20	3.3	4.17	3.09	3.8	0.003	0.62	0.0	0.05	16.00	0.00	2.201	7.96	0.00	8.4	91.2	0.4	-1.67	0.42	0.83	1.40	3.8	0.004	0.66	0.0	0.05	16.54	0.00	2.602	4.83	8.02	11.1	88.5	0.4	-1.21	0.54	0.42	0.83	1.40	1737	228	1	0	0	0	0	logfile
✔	8J46	35971	2025-02-10	2023-04-19	3.66	4.32	3.59	4.1	0.004	0.77	0.0	0.05	9.52	0.01	2.463	0.54	0.00	0.9	99.1	0.0	2.69	0.47	0.72	2.69	4.1	0.003	0.58	0.0	0.04	10.97	0.00	2.512	3.78	2.88	2.0	98.0	0.0	3.63	1.11	0.48	0.77	1.61	2158	362	1	0	0	0	0	logfile
✔	8J47	35972	2025-02-10	2023-04-19	2.5	2.05	2.32	2.2	0.004	0.74	0.0	0.06	18.27	0.00	2.518	4.26	2.38	9.3	90.7	0.0	-2.51	0.30	0.75	4.89	2.2	0.006	0.95	0.0	0.06	18.04	0.00	2.606	3.78	10.48	11.1	88.9	0.0	-3.26	0.48	0.44	0.86	4.56	2080	290	10	0	0	0	0	logfile
✔	8J3R	35965	2025-02-14	2023-04-18	2.95	2.52	2.96	3.4	0.003	0.50	0.0	0.04	20.20	0.00	2.060	5.62	2.46	2.0	98.0	0.0	0.87	0.64	0.51	0.81	2.2	0.005	0.67	0.0	0.04	21.79	0.01	1.960	7.78	3.33	3.1	96.9	0.0	1.24	1.37	0.84	0.84	2.85	9526	809	7	140	4	0	0	logfile
✔	8oSH	17153	2025-02-11	2023-04-18	4.9	5.59	5.45	4.9	0.006	0.94	0.0	0.06	3.38	0.00	2.299	5.83	0.00	11.2	88.7	0.1	-0.55	0.82	0.82	—	4.9	0.003	0.63	0.0	0.04	4.67	0.00	2.430	3.48	0.00	12.7	87.2	0.1	-1.18	0.53	0.83	0.85	—	6770	1372	5	0	0	0	0	logfile
✔	8J3W	35967	2025-02-14	2023-04-18	3.07	3.28	3.11	3.3	0.004	0.68	0.0	0.04	13.93	0.00	1.891	16.07	0.00	3.8	96.2	0.0	-1.89	0.58	0.76	2.14	3.3	0.003	0.63	0.0	0.04	15.43	0.00	2.524	9.93	1.13	1.8	98.2	0.0	0.71	0.93	0.56	0.77	1.38	9739	1218	2	0	1	0	0	logfile
✔	8oRS	17131	2025-02-14	2023-04-17	4.3	3.48	3.31	3.3	0.003	0.55	0.0	0.05	13.61	0.00	2.121	7.43	0.00	4.5	95.5	0.0	0.02	0.49	0.76	—	3.3	0.003	0.61	0.0	0.05	13.12	0.00	2.561	7.14	0.00	5.7	94.3	0.0	-0.34	0.31	0.49	0.76	—	10124	1298	4	0	2	0	0	logfile
✔	8SiE	40507	2025-02-14	2023-04-16	2.7	2.88	2.78	2.9	0.005	0.67	0.0	0.17	21.89	0.01	1.491	5.47	0.19	3.7	96.3	0.0	1.29	0.63	0.84	2.81	2.9	0.003	0.53	0.0	0.04	15.77	0.00	2.386	4.49	2.58	4.4	95.6	0.0	1.64	0.32	0.63	0.86	2.63	10398	1226	4	0	38	0	0	logfile
✔	8J20	35940	2025-02-13	2023-04-14	3.2	2.23	3.26	2.1	0.006	0.71	2.0	0.06	17.90	0.00	2.197	10.83	0.62	4.4	95.0	0.5	0.12	0.74	0.73	1.15	2.0	0.005	0.75	0.0	0.05	18.10	0.01	2.467	12.03	4.89	6.1	93.5	0.4	-0.50	1.16	0.76	0.77	1.60	8832	1125	6	0	2	0	0	logfile
✔	8J28	35947	2025-02-10	2023-04-14	3.7	4.43	3.42	4.2	0.006	0.92	0.0	0.04	17.63	0.00	2.213	16.94	2.28	6.3	93.7	0.0	-1.56	0.53	0.75	0.95	4.3	0.003	0.86	0.0	0.04	18.84	0.00	2.507	12.75	3.80	4.0	96.0	0.0	-0.46	2.32	0.51	0.76	1.21	2499	315	5	0	1	0	0	logfile
✔	8J22	35942	2025-02-13	2023-04-14	3.2	2.24	3.18	2.1	0.003	0.64	3.0	0.06	17.81	0.00	2.029	7.45	0.00	2.4	97.2	0.4	1.17	0.75	0.75	1.62	2.0	0.003	0.60	0.0	0.04	17.95	0.00	2.514	6.09	3.87	3.6	96.2	0.2	1.06	0.43	0.77	0.77	1.89	8856	1132	6	0	1	0	0	logfile
✔	8J2G	35949	2025-02-11	2023-04-14	3.4	3.72	3.48	3.7	0.010	1.14	0.0	0.06	10.18	0.01	2.033	3.24	0.00	10.7	89.3	0.0	-6.39	0.59	0.79	3.09	3.7	0.003	0.74	0.0	0.04	14.65	0.00	2.553	2.35	1.81	8.1	91.9	0.0	-2.70	1.68	0.55	0.78	2.11	5058	650	2	0	0	0	0	logfile
✔	8J21	35941	2025-02-13	2023-04-14	3.3	2.25	3.32	2.0	0.002	0.62	0.0	0.04	17.79	0.00	2.140	9.82	0.42	4.7	94.8	0.5	0.09	0.73	0.72	1.69	2.0	0.004	0.68	0.0	0.04	18.31	0.00	2.466	11.32	6.76	5.6	94.0	0.4	-0.38	1.13	0.75	0.76	1.90	8803	1125	6	0	1	0	0	logfile

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