Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8SiB	40505	2025-02-11	2023-04-14	2.62	3.44	2.68	3.3	0.007	1.30	0.0	0.06	11.70	0.01	2.265	4.20	0.78	12.9	85.8	1.3	-5.28	0.73	0.84	3.54	3.3	0.004	0.92	0.0	0.05	15.80	0.00	2.462	10.36	2.84	13.6	86.0	0.4	-1.58	2.02	0.71	0.83	2.77	3544	454	1	0	0	0	0	logfile
✔	8oRM	17129	2025-02-11	2023-04-14	1.9	1.83	1.88	1.9	0.004	0.58	0.0	0.04	16.75	0.00	2.236	3.99	0.90	1.6	98.2	0.2	1.88	0.70	0.81	5.96	1.9	0.003	0.61	0.0	0.04	16.77	0.01	2.606	4.77	1.62	1.1	98.7	0.2	1.62	0.21	0.70	0.82	5.76	5341	632	7	0	2	210	0	logfile
✔	8J20	35940	2025-02-13	2023-04-14	3.2	2.23	3.26	2.1	0.006	0.71	2.0	0.06	17.90	0.00	2.197	10.83	0.62	4.4	95.0	0.5	0.12	0.74	0.73	1.15	2.0	0.005	0.75	0.0	0.05	18.10	0.01	2.467	12.03	4.89	6.1	93.5	0.4	-0.50	1.16	0.76	0.77	1.60	8832	1125	6	0	2	0	0	logfile
✔	8J24	35944	2025-02-13	2023-04-14	2.6	2.10	2.66	1.8	0.002	0.55	2.0	0.06	18.15	0.00	2.131	6.42	3.11	1.9	97.9	0.2	1.18	0.80	0.79	2.75	1.5	0.003	0.58	0.0	0.04	18.13	0.00	2.406	6.68	3.86	3.4	96.6	0.0	1.30	1.10	0.81	0.82	2.98	8626	1105	6	0	1	0	0	logfile
✔	8J2F	35948	2025-02-11	2023-04-14	3.07	3.19	2.97	3.2	0.005	1.21	2.0	0.09	10.87	0.00	2.473	2.70	0.63	1.6	98.4	0.0	3.43	0.66	0.86	4.25	3.2	0.003	0.52	0.0	0.04	14.64	0.00	2.439	4.08	1.41	1.3	98.7	0.0	2.74	1.84	0.68	0.90	3.84	6164	768	4	0	6	0	0	logfile
✔	8J2M	35950	2025-02-11	2023-04-14	3.4	4.10	3.44	4.0	0.009	1.36	10.0	0.08	18.83	0.01	2.121	8.77	2.91	3.3	96.7	0.0	-2.01	0.59	0.75	2.41	4.0	0.003	0.79	0.0	0.04	17.86	0.00	2.495	11.75	3.92	2.5	97.5	0.0	1.27	1.37	0.52	0.79	1.56	6574	848	4	0	2	0	0	logfile
✔	8J23	35943	2025-02-13	2023-04-14	3.2	2.25	3.17	2.1	0.002	0.57	2.0	0.06	17.34	0.01	2.116	7.78	0.43	3.3	96.5	0.2	0.73	0.74	0.74	1.18	2.1	0.004	0.64	0.0	0.04	17.33	0.01	2.585	8.74	4.42	3.7	96.3	0.0	0.81	1.21	0.75	0.76	1.98	8596	1101	5	0	0	0	0	logfile
✔	8oRJ	17127	2025-02-12	2023-04-14	3.3	4.22	3.35	3.9	0.012	1.75	1.0	0.10	16.33	0.01	1.914	5.39	3.16	2.3	97.7	0.0	-0.70	0.86	0.78	2.17	3.8	0.003	0.72	0.0	0.05	16.93	0.00	2.056	11.79	2.34	2.3	97.7	0.0	0.39	1.79	0.85	0.83	2.11	6930	882	4	0	4	0	0	logfile
✔	8J27	35946	2025-02-10	2023-04-14	3.6	4.45	3.51	4.3	0.006	0.90	0.0	0.05	17.19	0.00	2.233	25.16	4.72	6.8	93.2	0.0	-1.70	0.53	0.72	0.93	4.3	0.004	0.84	0.0	0.04	18.38	0.00	2.457	12.06	7.48	7.5	92.5	0.0	0.00	1.40	0.51	0.76	1.22	2393	307	5	0	1	0	0	logfile
✔	8SGT	40467	2025-02-12	2023-04-13	3.6	3.99	3.64	3.7	0.005	0.75	0.0	0.05	13.35	0.01	2.090	4.53	0.00	2.2	97.8	0.0	-1.14	0.57	0.67	1.72	3.7	0.003	0.61	0.0	0.04	15.55	0.00	2.231	9.21	2.22	3.4	96.6	0.0	0.85	1.48	0.58	0.74	1.32	7119	918	4	0	6	0	0	logfile
✔	8J1R	35931	2025-02-11	2023-04-13	3.52	3.54	3.52	3.4	0.004	0.57	0.0	0.04	12.84	0.00	2.200	14.16	6.09	4.7	95.2	0.1	0.26	0.79	0.74	1.50	3.4	0.003	0.61	0.0	0.04	14.98	0.00	2.509	11.37	3.87	3.7	96.3	0.0	0.29	1.15	0.79	0.74	0.60	6497	823	2	0	0	0	0	logfile
✔	8SGW	40470	2025-02-14	2023-04-13	2.5	2.88	2.51	2.8	0.004	0.69	0.0	0.24	21.89	0.01	1.492	13.07	0.00	5.0	95.0	0.0	0.83	0.64	0.77	3.15	2.8	0.005	0.76	0.0	0.05	16.40	0.01	2.335	9.24	1.63	6.1	93.7	0.2	0.67	2.16	0.61	0.78	2.76	10414	1226	4	0	38	0	0	logfile
✔	8J1T	35932	2025-02-11	2023-04-13	3.3	2.34	2.94	2.2	0.004	0.58	0.0	0.04	11.73	0.00	2.220	8.62	0.00	7.2	92.8	0.0	-1.87	0.63	0.73	3.37	2.2	0.003	0.59	0.0	0.04	14.04	0.00	2.614	7.34	2.88	6.0	94.0	0.0	-1.73	0.37	0.65	0.77	2.79	3204	411	3	0	0	0	0	logfile
✔	8J1N	35928	2025-02-11	2023-04-13	2.51	2.65	2.47	2.7	0.009	1.01	0.0	0.05	15.98	0.00	2.219	8.99	0.00	2.9	97.1	0.0	1.72	0.60	0.79	3.77	2.7	0.003	0.57	0.0	0.04	17.28	0.00	2.495	6.86	2.07	2.0	98.0	0.0	3.16	0.49	0.64	0.88	3.50	3292	414	3	0	4	0	0	logfile
✔	8SHC	40483	2025-02-14	2023-04-13	3.0	3.12	2.90	3.2	0.005	0.70	0.0	0.17	21.90	0.01	2.197	6.87	0.19	5.9	94.1	0.0	1.04	0.67	0.78	2.59	3.2	0.003	0.59	0.0	0.04	16.57	0.00	2.370	4.66	1.72	5.3	94.7	0.0	1.62	0.40	0.67	0.81	2.57	10464	1226	4	0	40	0	0	logfile
✔	8SH3	40479	2025-02-14	2023-04-13	2.8	3.07	2.82	3.1	0.004	0.65	0.0	0.17	21.60	0.01	2.186	10.80	0.00	4.8	95.2	0.0	1.02	0.59	0.79	4.25	3.1	0.005	0.68	0.0	0.05	15.86	0.01	2.373	9.32	2.39	5.1	94.7	0.2	0.85	0.37	0.62	0.83	4.04	10386	1226	4	0	38	0	0	logfile
✔	8SH7	40480	2025-02-11	2023-04-13	2.8	3.11	2.79	3.1	0.008	0.92	0.0	0.06	14.91	0.01	1.939	2.16	0.00	2.7	97.3	0.0	-1.35	0.54	0.89	3.74	3.1	0.003	0.61	0.0	0.04	17.14	0.00	2.117	3.66	1.50	1.6	98.4	0.0	0.71	0.58	0.55	0.88	3.07	6819	862	4	1	2	0	0	logfile
✔	8oRF	17122	2025-02-11	2023-04-13	2.5	2.71	2.32	2.7	0.010	1.27	0.0	0.07	11.76	0.01	2.508	0.00	0.00	5.1	94.9	0.0	-2.82	0.31	0.74	5.59	2.7	0.004	0.64	0.0	0.05	16.01	0.00	2.389	3.87	2.27	4.7	95.3	0.0	-3.54	1.16	0.38	0.83	5.47	4653	303	3	0	0	0	2382	logfile
✔	8oRG	17123	2025-02-11	2023-04-13	2.3	2.70	2.18	2.6	0.010	1.26	0.0	0.08	11.92	0.01	2.462	0.00	0.00	2.4	97.6	0.0	-2.52	0.32	0.76	4.82	2.6	0.003	0.58	0.0	0.05	16.18	0.00	2.568	0.50	0.88	2.0	98.0	0.0	-2.93	1.12	0.37	0.82	4.32	3966	258	3	0	0	0	2025	logfile
✔	8J1J	35926	2025-02-14	2023-04-13	2.91	2.61	2.94	2.8	0.004	0.53	0.0	0.04	18.68	0.00	2.228	6.59	1.43	2.9	96.9	0.3	-1.23	0.84	0.85	3.09	2.8	0.006	0.64	0.0	0.04	20.35	0.00	2.512	7.48	2.14	4.6	95.1	0.3	0.43	0.53	0.85	0.85	2.73	9793	811	8	151	4	0	0	logfile

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