Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8oRG	17123	2025-02-11	2023-04-13	2.3	2.70	2.18	2.6	0.010	1.26	0.0	0.08	11.92	0.01	2.462	0.00	0.00	2.4	97.6	0.0	-2.52	0.32	0.76	4.82	2.6	0.003	0.58	0.0	0.05	16.18	0.00	2.568	0.50	0.88	2.0	98.0	0.0	-2.93	1.12	0.37	0.82	4.32	3966	258	3	0	0	0	2025	logfile
✔	8J19	35914	2025-02-13	2023-04-12	3.23	3.65	3.37	3.6	0.004	0.64	1.0	0.04	15.95	0.00	2.220	5.65	0.74	1.9	98.1	0.0	0.90	0.65	0.84	3.13	3.6	0.003	0.58	0.0	0.04	16.50	0.00	2.546	6.11	3.17	2.2	97.8	0.0	0.65	0.94	0.63	0.85	2.89	8801	1129	6	0	1	0	0	logfile
✔	8J18	35913	2025-02-13	2023-04-12	2.89	3.40	3.16	3.3	0.004	0.71	0.0	0.05	15.96	0.00	2.181	6.45	1.26	4.0	96.0	0.0	-0.18	0.56	0.78	3.08	3.3	0.003	0.66	0.0	0.04	16.55	0.00	2.481	8.20	2.41	3.5	96.4	0.1	0.41	0.91	0.56	0.79	2.91	8860	1137	6	0	1	0	0	logfile
✔	8J1A	35915	2025-02-13	2023-04-12	3.24	3.58	3.34	3.6	0.004	0.62	0.0	0.04	15.32	0.00	1.976	5.61	0.63	3.8	96.2	0.0	0.36	0.61	0.82	2.87	3.6	0.002	0.56	0.0	0.04	16.08	0.00	2.536	4.93	1.89	3.0	97.0	0.0	0.35	0.39	0.56	0.81	2.66	8845	1137	5	0	0	0	0	logfile
✔	8J1E	35920	2025-02-12	2023-04-12	3.84	3.91	3.88	3.9	0.004	0.79	0.0	0.05	14.02	0.01	2.310	5.99	0.00	1.9	98.1	0.0	0.90	0.70	0.82	2.42	3.9	0.003	0.59	0.0	0.04	15.21	0.00	2.609	4.38	0.51	2.0	98.0	0.0	1.66	0.92	0.69	0.82	2.12	7590	954	6	0	9	0	0	logfile
✔	8oQi	17111	2025-02-11	2023-04-12	3.1	3.09	2.34	3.3	0.013	2.01	0.0	0.11	18.29	0.01	2.465	9.18	2.63	0.0	100.0	0.0	0.22	0.51	0.84	3.31	3.3	0.006	0.62	0.0	0.05	16.91	0.00	2.633	4.14	3.68	3.1	96.9	0.0	-1.71	1.20	0.52	0.87	3.69	3810	560	10	0	0	0	0	logfile
✔	8SGJ	40457	2025-02-12	2023-04-12	3.1	3.60	3.20	3.5	0.004	0.70	0.0	0.05	12.73	0.01	1.994	5.39	0.00	2.6	97.4	0.0	-0.02	0.64	0.84	3.47	3.5	0.003	0.55	0.0	0.04	14.83	0.00	2.214	4.53	2.30	2.3	97.6	0.1	1.20	0.97	0.55	0.81	2.90	7667	982	4	0	9	1	0	logfile
✔	8SGK	40458	2025-02-12	2023-04-12	3.7	3.91	3.67	3.8	0.002	0.56	0.0	0.04	17.41	0.00	2.269	9.42	0.26	0.4	99.6	0.0	0.76	0.81	0.78	0.79	3.8	0.004	1.07	1.0	0.05	17.50	0.01	0.815	10.01	2.19	1.5	98.5	0.0	1.00	0.93	0.82	0.79	0.89	7622	986	4	0	2	0	0	logfile
✔	8SFJ	40443	2025-02-14	2023-04-11	3.6	4.77	3.67	4.0	0.005	1.19	0.0	0.07	22.09	0.01	2.182	7.41	0.22	2.3	97.7	0.0	-0.53	0.87	0.72	1.68	4.0	0.003	0.64	0.0	0.04	22.36	0.00	2.468	10.86	2.80	3.1	96.9	0.0	1.03	0.99	0.92	0.86	1.86	10207	1001	4	97	0	0	0	logfile
✔	8SG1	40450	2025-02-13	2023-04-11	2.94	3.40	3.06	3.4	0.005	0.89	2.0	0.06	13.73	0.01	2.235	6.41	1.78	2.3	97.7	0.0	0.06	0.52	0.80	3.35	3.4	0.002	0.58	0.0	0.04	14.90	0.00	2.537	4.42	1.99	2.6	97.4	0.0	0.70	0.35	0.54	0.81	3.07	8846	1127	7	0	3	0	0	logfile
✔	8oQ5	17105	2025-02-11	2023-04-11	2.4	2.13	2.42	2.3	0.015	2.05	0.0	0.10	14.25	0.01	2.517	1.55	0.00	3.0	97.0	0.0	-5.16	0.77	0.77	4.67	2.3	0.004	0.82	0.0	0.04	18.86	0.00	2.433	10.65	1.37	1.6	98.4	0.0	-3.70	0.76	0.83	0.86	5.34	6528	816	12	0	0	0	0	logfile
✔	8J0J	35904	2025-02-13	2023-04-11	2.7	2.79	2.72	2.7	0.005	0.70	0.0	0.06	16.09	0.00	2.238	9.99	1.25	1.6	98.4	0.0	-2.18	0.74	0.86	2.93	2.7	0.003	0.69	0.0	0.04	15.65	0.01	2.624	2.89	2.61	0.9	99.1	0.0	1.16	0.94	0.73	0.88	3.27	9138	1131	6	0	6	0	0	logfile
✔	8J0F	35901	2025-02-13	2023-04-10	3.3	4.15	3.22	3.8	0.009	1.06	0.0	0.05	18.09	0.01	2.242	17.62	2.13	1.8	98.2	0.0	0.30	0.81	0.82	1.63	3.8	0.003	0.72	0.0	0.04	17.55	0.00	2.044	8.92	1.70	1.4	98.6	0.0	1.92	2.22	0.81	0.85	1.31	8932	1144	12	0	8	0	0	logfile
✔	8SEH	40411	2025-02-11	2023-04-10	2.9	2.68	2.71	3.1	0.026	2.09	10.0	0.12	10.93	0.01	2.507	0.00	0.00	7.0	93.0	0.0	-2.29	0.52	0.80	4.20	3.0	0.003	0.63	0.0	0.05	16.87	0.00	2.612	6.07	2.03	5.8	94.2	0.0	-2.98	1.28	0.44	0.81	2.61	5570	730	10	0	0	0	0	logfile
✔	8SEK	40419	2025-02-10	2023-04-10	3.5	3.55	3.07	3.8	0.032	2.39	0.0	0.14	10.43	0.01	2.397	1.27	0.00	20.0	80.0	0.0	-3.19	0.49	0.76	4.54	3.8	0.006	0.86	0.0	0.06	15.24	0.00	2.565	17.93	3.33	15.3	84.7	0.0	-4.53	1.27	0.40	0.74	1.67	2380	320	10	0	0	0	0	logfile
✔	8SEL	40421	2025-02-11	2023-04-10	3.8	4.20	3.61	4.2	0.026	2.25	0.0	0.13	12.89	0.01	2.474	1.85	0.00	4.3	92.8	2.9	-1.59	0.59	0.73	3.09	4.1	0.007	1.11	0.0	0.07	18.21	0.00	2.542	29.18	6.96	17.1	82.9	0.0	-3.56	2.55	0.53	0.71	2.10	5500	730	20	0	0	0	0	logfile
✔	8iZZ	35878	2025-02-10	2023-04-09	3.75	3.60	3.46	3.7	0.017	3.95	17.0	0.34	16.30	0.00	1.847	34.96	0.00	15.2	84.8	0.0	-5.84	0.28	0.51	1.98	3.7	0.023	3.51	1.0	0.14	27.18	0.01	2.258	39.79	22.73	50.0	47.0	3.0	-6.99	3.53	0.29	0.49	-0.29	1342	198	22	0	0	0	0	logfile
✔	8SEA	40408	2025-02-14	2023-04-08	3.4	3.67	3.45	3.7	0.005	0.57	0.0	0.04	11.77	0.00	1.270	8.65	3.00	4.0	96.0	0.0	0.54	0.71	0.76	1.96	3.6	0.004	0.63	0.0	0.04	14.55	0.00	2.580	8.65	3.00	4.8	95.2	0.0	0.57	0.39	0.76	0.85	1.59	10208	1299	5	0	1	0	0	logfile
✔	8SEB	40409	2025-02-14	2023-04-08	3.24	3.49	3.29	3.4	0.005	0.58	0.0	0.04	12.08	0.00	2.213	7.32	1.74	4.4	95.5	0.1	0.67	0.65	0.72	1.85	3.4	0.003	0.64	0.0	0.04	14.64	0.00	1.041	7.84	2.22	3.9	96.0	0.2	0.47	0.56	0.72	0.80	1.98	9609	1223	4	0	1	0	0	logfile
✔	8SE9	40407	2025-02-14	2023-04-08	3.2	3.47	3.24	3.5	0.005	0.58	0.0	0.04	11.99	0.00	2.204	6.60	2.00	3.4	96.4	0.2	0.48	0.74	0.84	2.43	3.5	0.003	0.62	0.0	0.04	14.84	0.00	2.357	6.50	1.82	3.3	96.6	0.1	0.47	0.89	0.77	0.86	2.42	10195	1297	5	0	1	0	0	logfile

• ← previous
• Page 89 of 243
• next →