Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8SEA	40408	2025-02-14	2023-04-08	3.4	3.67	3.45	3.7	0.005	0.57	0.0	0.04	11.77	0.00	1.270	8.65	3.00	4.0	96.0	0.0	0.54	0.71	0.76	1.96	3.6	0.004	0.63	0.0	0.04	14.55	0.00	2.580	8.65	3.00	4.8	95.2	0.0	0.57	0.39	0.76	0.85	1.59	10208	1299	5	0	1	0	0	logfile
✔	8iZP	35867	2025-02-14	2023-04-07	3.31	3.72	3.43	3.7	0.015	2.04	19.0	0.13	17.71	0.01	2.316	9.67	15.23	3.7	96.2	0.2	-1.61	0.67	0.82	1.87	3.7	0.003	0.67	0.0	0.04	16.72	0.00	2.501	5.68	4.10	2.2	97.8	0.0	0.92	1.65	0.62	0.82	1.62	9425	1210	1	0	0	0	0	logfile
✔	8iZF	35863	2025-02-12	2023-04-07	3.85	4.31	3.92	4.2	0.006	1.10	0.0	0.06	16.15	0.01	1.945	21.89	2.73	9.5	89.8	0.7	-1.59	0.63	0.78	0.99	4.2	0.004	0.80	0.0	0.04	17.32	0.01	2.413	10.84	4.71	8.4	91.6	0.0	-0.33	2.31	0.61	0.78	1.02	7594	894	6	0	2	0	0	logfile
✔	8iZQ	35868	2025-02-12	2023-04-07	3.31	4.04	3.74	4.0	0.014	2.19	43.0	0.14	18.77	0.01	1.886	16.58	17.51	4.3	95.4	0.3	-1.26	0.58	0.71	1.33	4.0	0.003	0.67	0.0	0.04	17.62	0.00	2.572	8.82	5.31	2.2	97.8	0.0	0.50	2.54	0.54	0.71	1.07	7924	996	1	0	0	0	0	logfile
✔	8SDY	40354	2025-02-11	2023-04-07	2.79	3.13	2.86	3.1	0.005	0.66	0.0	0.04	16.84	0.01	2.018	4.74	0.72	1.4	98.6	0.0	2.03	0.62	0.83	2.49	3.1	0.003	0.59	0.0	0.04	17.10	0.00	2.487	4.99	1.92	1.9	98.1	0.0	2.37	0.26	0.59	0.81	2.07	3894	494	2	0	1	12	0	logfile
✔	8SDZ	40355	2025-02-11	2023-04-07	2.86	3.25	2.87	3.2	0.003	0.59	0.0	0.04	16.55	0.00	2.135	4.33	1.43	0.8	99.2	0.0	0.91	0.56	0.82	2.83	3.2	0.003	0.57	0.0	0.04	16.58	0.00	2.616	3.69	3.33	1.2	98.8	0.0	1.97	0.43	0.58	0.83	2.72	3913	500	2	0	1	22	0	logfile
✔	8oPQ	17085	2025-02-14	2023-04-07	3.28	2.33	3.33	2.2	0.003	0.52	0.0	0.04	9.91	0.01	2.245	8.25	0.00	3.8	96.2	0.0	1.64	0.77	0.77	3.11	2.2	0.003	0.62	0.0	0.04	15.06	0.00	2.526	7.17	3.18	3.7	96.3	0.0	2.10	0.52	0.77	0.79	2.88	10006	1296	4	0	2	0	0	logfile
✔	8SDU	40352	2025-02-11	2023-04-07	2.05	2.16	2.08	2.1	0.002	0.49	0.0	0.04	14.85	0.00	2.231	4.34	0.71	1.0	99.0	0.0	2.05	0.74	0.85	5.13	2.1	0.002	0.53	0.0	0.04	15.07	0.00	2.578	2.55	0.71	0.8	99.2	0.0	2.92	0.24	0.73	0.85	4.74	3942	500	2	0	0	70	0	logfile
✔	8SD0	40348	2025-02-11	2023-04-06	3.8	3.94	3.78	3.9	0.004	0.86	0.0	0.05	18.36	0.01	2.276	9.69	0.52	6.8	93.2	0.0	-1.62	0.73	0.79	1.64	3.9	0.003	0.66	0.0	0.04	18.75	0.00	1.466	10.66	3.30	6.4	93.6	0.0	-0.32	0.46	0.73	0.79	1.99	5829	636	3	31	2	0	0	logfile
✔	8SDA	40350	2025-02-12	2023-04-06	3.32	3.41	3.16	3.4	0.008	1.11	0.0	0.04	15.99	0.00	2.225	15.46	0.00	2.7	97.3	0.0	1.62	0.63	0.81	2.02	3.5	0.003	0.56	0.0	0.04	16.24	0.00	2.558	7.23	1.49	2.3	97.7	0.0	2.92	0.94	0.66	0.86	1.75	7414	939	8	0	19	0	0	logfile
✔	8iZ8	35835	2025-02-14	2023-04-06	3.13	3.49	3.24	3.4	0.002	0.50	0.0	0.04	14.07	0.00	2.264	6.14	0.00	1.9	98.1	0.0	-0.97	0.55	0.71	0.44	3.4	0.002	0.56	0.0	0.04	16.37	0.00	2.596	7.50	1.96	2.9	97.1	0.0	1.73	1.19	0.59	0.80	1.03	9805	1230	1	0	0	0	0	logfile
✔	8SCZ	40347	2025-02-11	2023-04-06	3.4	3.48	3.27	3.5	0.004	0.82	0.0	0.04	19.41	0.01	1.836	11.63	0.35	6.2	93.6	0.2	-2.21	0.60	0.66	1.04	3.5	0.002	0.55	0.0	0.04	19.71	0.00	2.537	10.57	2.63	4.5	95.5	0.0	0.19	1.15	0.60	0.68	1.56	6411	635	3	59	2	0	0	logfile
✔	8iZ9	35836	2025-02-14	2023-04-06	2.95	3.38	3.07	3.3	0.002	0.56	0.0	0.04	14.57	0.01	2.273	7.52	0.00	2.4	97.6	0.0	-0.94	0.52	0.61	0.25	3.3	0.003	0.63	0.0	0.04	16.54	0.00	2.555	6.96	1.69	2.8	97.2	0.0	1.32	1.25	0.64	0.83	1.19	9779	1224	2	0	1	0	0	logfile
✔	8iYW	35831	2025-02-12	2023-04-06	3.45	3.86	3.54	3.8	0.005	0.84	0.0	0.05	12.73	0.01	2.252	5.71	1.45	3.3	96.7	0.0	0.09	0.68	0.79	3.77	3.8	0.004	0.63	0.0	0.04	13.96	0.00	2.472	4.76	3.48	3.6	96.4	0.0	0.88	0.38	0.63	0.76	3.06	7849	1118	6	0	1	0	0	logfile
✔	8iYX	35832	2025-02-10	2023-04-06	3.34	3.71	3.03	3.6	0.007	0.86	0.0	0.05	15.49	0.00	2.252	12.03	4.08	3.5	96.1	0.4	0.98	0.48	0.81	1.56	3.7	0.004	0.71	0.0	0.04	16.58	0.00	2.486	6.90	2.45	4.3	95.7	0.0	2.89	1.40	0.50	0.85	1.15	2207	266	2	0	1	0	0	logfile
✔	8iZ7	35834	2025-02-14	2023-04-06	3.8	4.27	3.88	4.1	0.004	0.77	0.0	0.04	13.69	0.00	2.220	6.53	0.00	5.2	94.8	0.0	-4.30	0.58	0.67	0.95	4.1	0.003	0.65	0.0	0.04	16.01	0.00	2.564	4.37	1.68	6.5	93.5	0.0	-1.23	1.31	0.67	0.81	0.89	9830	1229	2	0	1	0	0	logfile
✔	8iZA	35837	2025-02-14	2023-04-06	3.48	3.88	3.60	3.8	0.003	0.61	0.0	0.04	12.64	0.00	2.116	5.45	0.00	2.4	97.6	0.0	-1.60	0.60	0.75	0.82	3.8	0.003	0.59	0.0	0.04	15.62	0.00	1.891	5.16	2.12	3.6	96.4	0.0	1.02	0.87	0.65	0.87	1.10	9985	1246	2	0	4	0	0	logfile
✔	8ooY	17033	2025-02-11	2023-04-06	4.0	3.79	3.92	3.7	0.004	0.68	0.0	0.04	20.02	0.00	2.016	12.57	0.79	5.1	94.9	0.0	-0.97	0.81	0.77	—	3.7	0.004	0.66	0.0	0.04	21.17	0.00	2.180	10.61	1.77	6.0	94.0	0.0	-0.07	0.44	0.81	0.78	—	5828	604	5	51	1	0	0	logfile
✔	8ooF	17012	2025-02-11	2023-04-05	2.9	1.91	3.05	2.8	0.004	0.71	0.0	0.05	13.65	0.01	2.043	2.60	0.00	2.9	97.1	0.0	-0.80	0.84	0.83	4.92	2.8	0.003	0.65	0.0	0.04	16.30	0.00	1.998	5.08	2.14	2.2	97.8	0.0	0.63	1.96	0.85	0.84	4.27	4479	556	3	0	2	0	0	logfile
✔	8SCX	40346	2025-02-11	2023-04-05	2.7	3.26	2.76	3.1	0.006	0.70	0.0	0.04	14.97	0.00	2.240	5.56	0.18	1.9	98.1	0.0	1.27	0.69	0.85	4.05	3.1	0.004	0.55	0.0	0.04	16.69	0.00	2.399	5.56	2.33	2.3	97.7	0.0	2.44	0.41	0.64	0.83	3.35	5753	760	7	0	2	0	0	logfile

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