Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8SCX	40346	2025-02-11	2023-04-05	2.7	3.26	2.76	3.1	0.006	0.70	0.0	0.04	14.97	0.00	2.240	5.56	0.18	1.9	98.1	0.0	1.27	0.69	0.85	4.05	3.1	0.004	0.55	0.0	0.04	16.69	0.00	2.399	5.56	2.33	2.3	97.7	0.0	2.44	0.41	0.64	0.83	3.35	5753	760	7	0	2	0	0	logfile
✔	8iY6	35815	2025-02-11	2023-04-04	3.13	3.04	3.19	3.1	0.003	0.55	0.0	0.04	12.05	0.00	2.168	6.91	0.00	2.3	97.7	0.0	1.84	0.42	0.61	2.08	3.1	0.007	1.47	1.0	0.05	14.65	0.00	2.448	9.87	2.13	2.9	97.1	0.0	2.01	1.27	0.42	0.63	1.57	2495	314	2	0	0	0	0	logfile
✔	8oo6	17005	2025-02-11	2023-04-04	4.3	4.37	4.20	4.1	0.003	0.67	0.0	0.04	20.16	0.00	2.225	10.88	0.00	4.2	95.8	0.0	-0.09	0.88	0.81	—	4.1	0.006	0.70	0.0	0.04	20.32	0.00	2.362	12.73	0.00	5.1	94.9	0.0	-0.37	1.61	0.89	0.84	—	5890	604	5	54	1	0	0	logfile
✔	8SC1	40334	2025-02-11	2023-04-04	2.92	3.14	2.89	3.2	0.003	0.68	0.0	0.04	10.47	0.01	2.266	1.15	0.00	2.5	97.5	0.0	-0.78	0.58	0.81	2.42	3.2	0.003	0.58	0.0	0.04	13.90	0.00	2.545	2.45	1.89	1.1	98.9	0.0	2.11	1.98	0.61	0.82	1.45	3447	446	1	0	0	0	0	logfile
✔	8iY7	35816	2025-02-10	2023-04-04	3.71	3.66	3.44	3.6	0.019	4.84	30.0	0.35	18.12	0.00	1.763	38.65	0.00	18.1	81.9	0.0	-5.43	0.30	0.58	2.90	3.5	0.024	3.39	0.0	0.11	26.65	0.01	2.171	45.45	14.58	41.7	51.4	6.9	-6.71	2.44	0.30	0.58	1.40	1464	216	24	0	0	0	0	logfile
✔	8SC2	40335	2025-02-11	2023-04-04	3.36	3.56	3.32	3.5	0.003	0.55	0.0	0.04	8.52	0.00	2.258	3.93	0.00	1.3	98.7	0.0	2.79	0.58	0.81	1.97	3.5	0.003	0.63	0.0	0.04	13.65	0.00	2.573	6.60	1.86	2.0	98.0	0.0	2.78	1.03	0.57	0.82	1.28	3534	453	2	0	1	0	0	logfile
✔	8SC4	40337	2025-02-11	2023-04-04	3.46	3.65	3.43	3.6	0.004	0.68	0.0	0.04	10.98	0.03	2.296	2.80	0.00	2.9	97.1	0.0	-0.96	0.57	0.77	2.57	3.6	0.003	0.77	0.0	0.04	15.40	0.00	2.538	10.78	3.16	1.3	98.7	0.0	2.60	1.20	0.57	0.78	2.56	3544	456	2	0	1	0	0	logfile
✔	8SC3	40336	2025-02-11	2023-04-04	3.24	3.44	3.19	3.4	0.005	0.64	0.0	0.04	11.84	0.01	2.206	2.15	0.00	1.6	98.4	0.0	-0.54	0.59	0.78	2.69	3.4	0.003	0.66	0.0	0.04	15.65	0.01	2.462	10.34	2.17	1.8	98.2	0.0	2.60	2.22	0.58	0.80	2.51	3463	445	2	0	1	0	0	logfile
✔	8oo9	17007	2025-02-11	2023-04-04	3.2	2.32	3.17	3.1	0.010	1.70	0.0	0.06	20.61	0.01	1.879	4.84	0.00	2.3	97.7	0.0	-2.21	0.81	0.78	3.72	3.1	0.004	1.04	0.0	0.04	22.16	0.00	1.338	6.80	2.02	2.6	97.4	0.0	-0.71	1.13	0.83	0.81	2.35	4516	439	4	42	3	0	0	logfile
✔	8SC6	40339	2025-02-11	2023-04-04	3.13	3.36	3.12	3.4	0.003	0.50	0.0	0.03	8.71	0.00	2.273	3.28	0.81	0.9	99.1	0.0	2.80	0.58	0.82	2.08	3.4	0.002	0.50	0.0	0.04	12.64	0.00	2.605	3.57	1.62	0.9	99.1	0.0	3.25	0.46	0.52	0.80	2.15	3479	447	2	0	1	0	0	logfile
✔	8iY9	35817	2025-02-12	2023-04-04	3.37	3.65	3.39	3.7	0.005	0.90	1.0	0.05	12.94	0.01	2.123	3.88	1.07	3.1	96.9	0.0	-0.48	0.70	0.79	3.58	3.7	0.003	0.61	0.0	0.04	14.23	0.00	2.525	4.53	3.33	2.3	97.7	0.0	0.46	0.43	0.70	0.82	3.02	8121	1130	6	0	1	0	0	logfile
✔	8ooA	17008	2025-02-12	2023-04-04	3.18	1.83	3.09	2.8	0.008	1.08	0.0	0.06	27.96	0.01	2.299	5.05	0.00	1.5	98.5	0.0	-2.10	0.75	0.76	3.22	2.8	0.004	0.61	0.0	0.04	28.42	0.00	2.575	7.44	2.26	1.7	98.3	0.0	1.92	1.03	0.77	0.76	2.94	8405	529	8	204	0	0	0	logfile
✔	8oNT	17000	2025-02-11	2023-04-03	3.66	3.95	3.45	3.9	0.006	0.67	0.0	0.04	16.92	0.01	1.908	33.89	0.87	6.7	93.3	0.0	1.63	0.63	0.79	0.81	3.9	0.004	0.63	0.0	0.04	15.90	0.00	2.505	7.64	3.48	6.2	93.8	0.0	1.92	0.36	0.62	0.78	1.16	4316	558	3	0	1	1	0	logfile
✔	8SBB	40303	2025-02-11	2023-04-03	3.59	4.04	3.46	3.9	0.016	1.33	0.0	0.07	15.68	0.01	2.146	19.11	3.99	14.9	85.1	0.0	-5.32	0.64	0.80	2.32	3.9	0.003	0.75	0.0	0.04	16.37	0.01	2.155	6.58	3.05	6.5	93.5	0.0	-1.09	0.85	0.65	0.81	2.03	4049	499	3	0	3	0	0	logfile
✔	8SBD	40305	2025-02-12	2023-04-03	3.2	3.26	4.77	3.7	0.003	0.73	0.0	0.04	12.98	0.00	2.028	18.83	5.97	6.2	93.8	0.0	-4.19	0.70	0.71	2.96	3.7	0.004	0.72	0.0	0.05	15.54	0.00	2.393	23.90	3.92	13.3	86.7	0.0	-5.31	0.74	0.72	0.74	3.87	8864	584	32	0	0	0	4280	logfile
✔	8SAi	40270	2025-02-13	2023-04-01	3.27	2.43	—	3.2	0.003	0.57	0.0	0.04	13.99	0.00	2.199	6.68	0.10	3.0	97.0	0.0	0.99	0.78	0.78	2.17	3.2	0.004	0.60	0.0	0.04	15.73	0.00	2.389	4.19	2.41	4.1	95.9	0.0	0.68	0.55	0.80	0.83	2.71	9062	1148	6	0	0	0	0	logfile
✔	8iXL	35795	2025-02-14	2023-04-01	3.5	3.61	3.45	3.6	0.012	1.48	0.0	0.10	11.65	0.00	2.568	2.07	0.00	0.4	99.6	0.0	2.40	0.71	0.84	1.08	3.6	0.003	0.45	0.0	0.04	16.16	0.00	2.555	5.30	2.26	0.4	99.6	0.0	5.66	1.12	0.68	0.85	0.96	10970	1455	35	0	0	0	0	logfile
✔	8oMU	16977	2025-02-11	2023-03-31	3.43	3.90	3.53	3.8	0.003	0.65	0.0	0.04	18.00	0.00	2.230	13.64	0.79	4.1	95.9	0.0	0.64	0.61	0.77	1.27	3.8	0.003	0.66	0.0	0.04	17.94	0.00	2.579	11.33	4.13	4.0	96.0	0.0	0.90	1.21	0.61	0.77	1.43	4737	612	2	0	0	0	0	logfile
✔	8iWU	35780	2025-02-12	2023-03-31	3.31	3.58	3.40	3.5	0.004	1.25	0.0	0.04	16.53	0.00	2.094	7.70	0.13	3.8	96.1	0.1	1.91	0.74	0.80	1.39	3.5	0.004	0.62	0.0	0.04	17.17	0.00	1.914	8.49	3.65	4.2	95.8	0.0	1.58	0.48	0.76	0.85	1.57	6843	893	2	0	2	0	0	logfile
✔	8oMo	16973	2025-02-14	2023-03-31	3.43	2.51	3.47	3.2	0.007	1.36	2.0	0.09	17.68	0.00	1.488	21.48	4.68	8.0	92.0	0.0	-3.82	0.75	0.80	1.33	2.1	0.005	0.72	0.0	0.05	18.71	0.00	1.873	16.40	4.59	5.4	94.6	0.0	-0.53	0.54	0.71	0.72	1.14	10290	1288	4	0	4	0	0	logfile

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