Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8iWU	35780	2025-02-12	2023-03-31	3.31	3.58	3.40	3.5	0.004	1.25	0.0	0.04	16.53	0.00	2.094	7.70	0.13	3.8	96.1	0.1	1.91	0.74	0.80	1.39	3.5	0.004	0.62	0.0	0.04	17.17	0.00	1.914	8.49	3.65	4.2	95.8	0.0	1.58	0.48	0.76	0.85	1.57	6843	893	2	0	2	0	0	logfile
✔	8oMU	16977	2025-02-11	2023-03-31	3.43	3.90	3.53	3.8	0.003	0.65	0.0	0.04	18.00	0.00	2.230	13.64	0.79	4.1	95.9	0.0	0.64	0.61	0.77	1.27	3.8	0.003	0.66	0.0	0.04	17.94	0.00	2.579	11.33	4.13	4.0	96.0	0.0	0.90	1.21	0.61	0.77	1.43	4737	612	2	0	0	0	0	logfile
✔	8iWR	35777	2025-02-12	2023-03-31	3.52	3.68	3.52	3.7	0.004	0.70	0.0	0.04	18.08	0.00	2.149	9.54	0.26	4.3	95.7	0.0	0.89	0.65	0.73	0.62	3.7	0.004	0.69	0.0	0.04	17.71	0.00	2.120	9.18	4.82	6.3	93.7	0.0	0.57	0.52	0.71	0.80	1.34	6871	893	2	0	3	0	0	logfile
✔	8oMo	16973	2025-02-14	2023-03-31	3.43	2.51	3.47	3.2	0.007	1.36	2.0	0.09	17.68	0.00	1.488	21.48	4.68	8.0	92.0	0.0	-3.82	0.75	0.80	1.33	2.1	0.005	0.72	0.0	0.05	18.71	0.00	1.873	16.40	4.59	5.4	94.6	0.0	-0.53	0.54	0.71	0.72	1.14	10290	1288	4	0	4	0	0	logfile
✔	8oL2	16942	2025-02-10	2023-03-30	3.0	3.17	1.54	3.3	0.004	0.45	0.0	0.05	9.08	0.00	2.275	10.00	4.35	3.4	96.6	0.0	-2.34	0.48	0.91	5.22	3.3	0.006	0.68	0.0	0.05	15.97	0.00	2.530	3.04	7.83	4.1	92.4	3.4	-3.10	0.44	0.43	0.90	6.05	2260	310	10	0	0	0	0	logfile
✔	8oLo	16960	2025-02-10	2023-03-30	3.5	3.16	3.18	3.4	0.005	0.87	0.0	0.07	11.69	0.01	2.375	9.87	0.00	6.9	93.1	0.0	-3.19	0.37	0.76	5.66	3.2	0.008	0.86	0.0	0.06	17.41	0.00	2.541	13.30	5.42	5.9	94.1	0.0	-3.48	1.84	0.39	0.79	2.95	2330	310	10	0	0	0	0	logfile
✔	8oL3	16944	2025-02-11	2023-03-30	3.5	3.67	1.73	4.2	0.009	0.67	0.0	0.06	9.52	0.01	2.263	7.26	0.00	0.0	100.0	0.0	-0.18	0.42	0.77	3.49	4.2	0.003	0.48	0.0	0.06	16.21	0.00	2.589	11.90	2.80	9.0	91.0	0.0	-0.92	0.93	0.33	0.69	4.73	4970	330	10	0	0	0	2500	logfile
✔	8oL7	16953	2025-02-10	2023-03-30	3.0	3.28	2.45	3.4	0.006	0.81	0.0	0.07	13.04	0.00	2.619	10.11	0.00	3.3	96.7	0.0	-2.92	0.50	0.79	5.15	3.4	0.005	0.72	0.0	0.06	15.41	0.00	2.628	12.26	0.43	6.0	94.0	0.0	-2.91	0.96	0.44	0.81	6.12	2320	320	10	0	0	0	0	logfile
✔	8oLQ	16961	2025-02-10	2023-03-30	4.0	3.17	3.52	3.7	0.003	0.49	0.0	0.05	7.64	0.00	2.207	3.69	0.00	0.0	100.0	0.0	-0.52	0.25	0.70	—	3.7	0.002	0.46	0.0	0.05	14.60	0.00	2.568	3.28	2.40	6.0	94.0	0.0	-1.70	1.58	0.24	0.71	—	2445	160	5	0	0	0	1185	logfile
✔	8oLG	16957	2025-02-10	2023-03-30	4.2	3.16	3.54	4.2	0.002	0.41	0.0	0.05	9.55	0.00	2.261	9.57	0.00	13.5	86.5	0.0	-4.82	0.25	0.63	—	4.2	0.006	1.00	0.0	0.06	15.89	0.00	2.594	19.83	0.00	17.8	82.2	0.0	-4.83	1.60	0.30	0.66	—	1490	195	5	0	0	0	0	logfile
✔	8iWN	35774	2025-02-13	2023-03-30	3.0	3.16	2.99	3.2	0.013	1.22	0.0	0.07	10.55	0.01	2.398	1.24	0.00	6.0	94.0	0.0	-5.96	0.70	0.86	3.84	3.2	0.006	0.75	0.0	0.05	14.29	0.01	2.481	2.70	2.63	5.1	94.9	0.0	-1.12	0.37	0.69	0.87	2.86	8764	1118	4	0	4	0	0	logfile
✔	8oLN	16959	2025-02-10	2023-03-30	3.3	3.38	2.68	3.7	0.002	0.48	0.0	0.04	9.04	0.00	2.271	10.63	2.41	8.2	91.8	0.0	-4.24	0.41	0.82	4.41	3.4	0.004	0.63	0.0	0.05	17.25	0.00	2.549	11.35	8.28	6.2	93.8	0.0	-4.46	2.86	0.40	0.81	3.70	2830	360	10	0	0	0	0	logfile
✔	8oL6	16952	2025-02-10	2023-03-30	3.8	3.75	2.68	3.8	0.004	0.56	0.0	0.05	9.68	0.00	2.255	9.57	0.00	3.4	96.6	0.0	-2.28	0.46	0.86	5.96	3.8	0.005	0.66	0.0	0.05	16.45	0.00	2.557	12.17	8.70	7.9	91.4	0.7	-2.68	1.13	0.46	0.87	4.57	2260	310	10	0	0	0	0	logfile
✔	8iWJ	35768	2025-02-13	2023-03-30	3.0	3.23	3.01	3.2	0.010	1.06	0.0	0.06	9.69	0.01	2.363	1.86	0.00	7.8	92.0	0.2	-6.16	0.71	0.86	4.27	3.2	0.003	0.65	0.0	0.04	13.44	0.00	2.204	4.00	1.73	5.1	94.9	0.0	-1.13	1.19	0.72	0.87	2.76	8484	1092	2	0	0	0	0	logfile
✔	8iWK	35769	2025-02-12	2023-03-30	3.0	3.18	2.97	3.2	0.010	1.10	0.0	0.06	10.00	0.01	2.313	1.92	0.00	9.2	90.8	0.0	-6.57	0.65	0.83	3.72	3.2	0.003	0.64	0.0	0.04	14.10	0.00	2.581	4.24	2.28	6.4	93.6	0.0	-1.26	1.18	0.65	0.85	2.50	8479	1090	3	0	1	0	0	logfile
✔	8iWP	35776	2025-02-12	2023-03-30	3.59	3.73	3.54	3.7	0.003	0.69	0.0	0.04	16.15	0.00	2.301	8.90	0.39	4.9	95.0	0.1	1.35	0.67	0.72	0.72	3.7	0.004	0.76	0.0	0.04	16.67	0.00	2.276	9.97	4.41	5.6	94.4	0.0	1.19	0.54	0.71	0.78	0.57	6861	896	2	0	1	0	0	logfile
✔	8oL5	16949	2025-02-10	2023-03-30	3.4	3.10	1.47	3.0	0.003	0.44	0.0	0.06	9.97	0.00	2.393	2.17	0.00	0.0	100.0	0.0	-0.75	0.53	0.87	5.76	3.0	0.005	0.51	0.0	0.05	15.75	0.00	2.533	4.78	3.91	2.1	97.9	0.0	-1.36	1.03	0.56	0.88	5.63	2260	310	10	0	0	0	0	logfile
✔	8iWM	35771	2025-02-10	2023-03-30	3.17	3.65	2.80	3.5	0.004	0.76	0.0	0.04	14.98	0.00	2.390	9.55	5.26	3.4	96.6	0.0	-2.66	0.56	0.76	2.24	3.5	0.002	0.62	0.0	0.04	15.10	0.00	2.614	8.00	4.74	0.7	99.3	0.0	0.45	1.19	0.58	0.77	1.96	1980	271	2	0	1	0	0	logfile
✔	8S9P	40241	2025-02-13	2023-03-29	3.8	4.16	3.92	4.0	0.005	0.82	0.0	0.05	17.16	0.01	2.024	21.44	1.88	9.3	90.5	0.2	-2.07	0.80	0.78	1.62	4.0	0.004	0.79	0.0	0.05	17.33	0.01	2.462	14.89	5.93	8.6	91.4	0.0	-2.01	1.27	0.80	0.78	1.59	9288	1189	3	0	0	0	0	logfile
✔	8iW1	35761	2025-02-12	2023-03-29	3.4	2.38	3.19	2.2	0.007	0.86	1.0	0.06	15.68	0.01	2.179	10.19	0.59	5.6	94.4	0.0	-1.82	0.77	0.71	1.64	2.2	0.003	0.64	0.0	0.04	16.72	0.00	2.474	5.68	3.90	4.5	95.5	0.0	-0.22	0.54	0.77	0.76	1.85	8327	1107	5	0	0	0	0	logfile

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