Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8oKX	16933	2025-02-13	2023-03-29	3.51	5.05	3.73	3.8	0.010	0.99	0.0	0.05	16.07	0.01	1.857	12.70	0.42	6.3	93.2	0.5	-1.03	0.63	0.52	0.76	3.8	0.004	0.91	0.0	0.05	17.09	0.00	2.367	19.36	2.39	7.7	92.3	0.0	-1.13	1.57	0.72	0.75	1.04	6399	799	5	0	1	0	0	logfile
✔	8iW4	35762	2025-02-12	2023-03-29	3.49	2.95	3.34	3.3	0.003	0.81	2.0	0.06	14.91	0.00	2.143	9.81	1.39	4.6	95.4	0.0	-0.63	0.58	0.74	1.89	3.3	0.002	0.53	0.0	0.04	16.23	0.00	2.496	4.68	2.90	3.5	96.5	0.0	0.00	0.97	0.63	0.81	1.47	7900	1045	6	0	1	0	0	logfile
✔	8iWE	35765	2025-02-10	2023-03-29	3.4	3.95	3.24	3.8	0.004	0.93	1.0	0.07	16.00	0.00	2.321	10.10	2.84	5.9	94.1	0.0	-0.50	0.58	0.79	2.37	3.7	0.002	0.59	0.0	0.04	15.67	0.00	2.645	2.75	0.47	4.1	95.9	0.0	1.71	1.01	0.61	0.84	2.23	2236	296	2	0	1	0	0	logfile
✔	8iW9	35764	2025-02-14	2023-03-29	3.08	3.58	2.85	3.3	0.003	0.66	1.0	0.05	14.65	0.00	2.168	8.27	0.61	4.4	95.6	0.0	0.21	0.78	0.88	3.16	3.3	0.004	0.61	0.0	0.04	15.20	0.00	2.341	4.61	3.18	4.0	96.0	0.0	1.05	1.14	0.79	0.89	3.11	9693	1293	6	0	0	0	0	logfile
✔	8iW1	35761	2025-02-12	2023-03-29	3.4	2.38	3.19	2.2	0.007	0.86	1.0	0.06	15.68	0.01	2.179	10.19	0.59	5.6	94.4	0.0	-1.82	0.77	0.71	1.64	2.2	0.003	0.64	0.0	0.04	16.72	0.00	2.474	5.68	3.90	4.5	95.5	0.0	-0.22	0.54	0.77	0.76	1.85	8327	1107	5	0	0	0	0	logfile
✔	8iW7	35763	2025-02-12	2023-03-29	2.97	3.20	2.95	3.3	0.004	0.71	0.0	0.04	15.12	0.00	2.214	9.35	1.85	3.8	96.2	0.0	-1.84	0.67	0.78	2.02	3.2	0.003	0.65	0.0	0.04	15.90	0.00	2.494	6.42	2.97	3.3	96.7	0.0	-0.73	0.39	0.67	0.77	1.79	8305	1129	6	0	1	0	0	logfile
✔	8oKD	16926	2025-02-12	2023-03-28	3.1	3.30	3.12	3.3	0.003	0.51	0.0	0.03	21.86	0.00	2.207	7.88	0.39	6.5	93.5	0.0	-0.76	0.56	0.62	2.28	3.2	0.003	0.57	0.0	0.04	21.74	0.00	2.548	5.52	4.69	7.5	92.5	0.0	-0.85	1.01	0.72	0.79	1.81	7748	582	4	140	0	0	0	logfile
✔	8S9G	40240	2025-02-12	2023-03-28	3.0	3.31	3.00	3.3	0.010	1.29	0.0	0.08	11.61	0.00	2.064	5.11	1.22	2.2	97.6	0.2	-0.22	0.58	0.62	3.80	3.3	0.003	0.62	0.0	0.04	12.97	0.00	2.465	6.37	1.63	2.0	98.0	0.0	0.78	0.51	0.61	0.68	3.67	7004	986	7	0	10	0	0	logfile
✔	8iUK	35724	2025-02-14	2023-03-24	2.67	2.43	2.73	2.8	0.004	0.52	0.0	0.04	8.04	0.00	2.280	5.66	0.37	0.9	99.1	0.0	-0.68	0.51	0.68	1.75	2.5	0.005	0.72	0.0	0.05	16.59	0.00	2.365	6.97	4.24	2.2	97.8	0.0	0.95	1.96	0.62	0.87	3.40	9951	1270	7	0	1	0	0	logfile
✔	8iUM	35726	2025-02-14	2023-03-24	3.14	3.27	3.01	3.3	0.005	0.67	1.0	0.05	8.23	0.00	2.262	6.27	0.28	2.2	97.8	0.1	-0.94	0.51	0.69	1.95	3.3	0.003	0.57	0.0	0.04	13.61	0.00	2.414	5.10	2.30	2.2	97.8	0.0	1.28	0.83	0.66	0.87	3.36	9955	1270	7	0	1	0	0	logfile
✔	8iUL	35725	2025-02-13	2023-03-24	2.78	2.69	2.88	3.1	0.006	0.66	1.0	0.06	9.74	0.01	2.116	6.02	0.61	1.4	98.6	0.0	-1.10	0.58	0.73	2.87	3.0	0.002	0.60	0.0	0.04	15.46	0.00	2.478	5.01	2.14	1.9	98.1	0.0	1.40	0.81	0.61	0.84	2.87	9016	1147	6	0	1	0	0	logfile
✔	8iU2	35714	2025-02-13	2023-03-23	3.35	3.66	3.45	3.7	0.012	1.19	0.0	0.07	10.94	0.01	2.299	6.27	1.64	6.6	93.3	0.1	-2.77	0.65	0.83	3.65	3.7	0.004	0.66	0.0	0.04	14.91	0.00	2.520	6.27	3.16	3.9	96.1	0.0	-0.27	0.67	0.67	0.85	2.51	8734	1137	6	0	1	0	0	logfile
✔	8oJ4	16904	2025-02-12	2023-03-23	4.35	4.31	4.08	4.2	0.004	0.82	0.0	0.05	13.75	0.00	2.193	8.14	0.26	15.9	83.9	0.2	-4.77	0.79	0.84	—	4.2	0.003	0.80	0.0	0.05	13.80	0.00	2.506	5.37	0.26	7.6	92.2	0.2	-2.12	1.03	0.79	0.85	—	6983	894	7	0	0	0	0	logfile
✔	8oiF	16891	2025-02-11	2023-03-22	3.5	3.41	3.30	3.4	0.003	0.59	0.0	0.04	13.83	0.01	2.246	6.05	0.00	6.8	93.2	0.0	-0.42	0.75	0.81	3.19	3.3	0.002	0.58	0.0	0.04	14.39	0.00	1.140	5.98	2.65	5.8	94.2	0.0	-0.12	0.85	0.75	0.81	2.80	6589	934	4	0	1	0	0	logfile
✔	8iTF	35705	2025-02-13	2023-03-22	3.46	2.33	3.36	2.1	0.005	0.64	0.0	0.05	14.17	0.00	2.250	5.05	0.95	3.4	96.6	0.0	-0.32	0.77	0.78	2.35	2.2	0.004	0.61	0.0	0.04	15.87	0.00	2.568	3.87	2.94	4.1	95.9	0.0	0.21	0.93	0.79	0.81	2.34	9551	1279	7	0	1	0	0	logfile
✔	8iTM	35707	2025-02-12	2023-03-22	3.13	3.36	3.13	3.4	0.004	0.61	0.0	0.04	14.14	0.00	2.218	9.97	0.00	4.4	95.6	0.0	0.04	0.63	0.77	1.91	3.4	0.003	0.56	0.0	0.04	16.07	0.00	2.578	7.40	2.49	3.2	96.8	0.0	0.61	2.17	0.66	0.81	1.38	7905	1035	5	0	0	0	0	logfile
✔	8iTL	35706	2025-02-12	2023-03-22	3.23	3.44	3.22	3.5	0.004	0.61	0.0	0.04	14.37	0.00	1.862	9.42	0.00	4.1	95.9	0.0	-0.13	0.62	0.76	2.50	3.5	0.003	0.62	0.0	0.04	16.24	0.00	2.481	5.96	2.59	2.7	97.3	0.0	0.52	0.37	0.65	0.80	2.28	7954	1035	5	0	0	0	0	logfile
✔	8iSY	35700	2025-02-12	2023-03-21	3.27	4.45	3.37	4.0	0.004	0.60	0.0	0.05	12.79	0.00	2.047	6.28	0.00	2.9	97.0	0.1	0.64	0.79	0.69	4.36	4.0	0.002	0.53	0.0	0.04	13.65	0.00	2.590	6.66	0.93	2.9	97.1	0.0	1.44	0.45	0.77	0.76	3.93	7877	957	2	0	0	0	0	logfile
✔	8iSS	35694	2025-02-13	2023-03-21	3.19	3.41	3.22	3.5	0.003	0.51	0.0	0.04	20.03	0.00	2.026	15.69	0.39	6.0	94.0	0.0	-1.16	0.64	0.77	2.33	3.6	0.003	0.57	0.0	0.04	20.19	0.00	2.051	8.26	2.75	5.2	94.8	0.0	0.14	0.41	0.64	0.76	1.73	8807	889	6	80	1	0	0	logfile
✔	8iSZ	35701	2025-02-13	2023-03-21	3.27	4.42	3.33	4.2	0.004	0.85	0.0	0.06	20.89	0.01	1.918	9.90	0.12	6.8	93.2	0.0	-2.32	0.78	0.62	0.36	4.1	0.005	0.83	0.0	0.05	20.89	0.01	2.151	18.95	3.90	6.4	93.6	0.0	-1.51	1.59	0.82	0.76	0.96	8461	915	4	45	0	0	0	logfile

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