Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8oH2	16876	2025-02-11	2023-03-20	2.6	2.51	2.64	2.7	0.007	0.62	0.0	0.04	13.00	0.00	2.219	2.03	0.00	0.0	100.0	0.0	-3.19	0.48	0.86	6.37	2.6	0.004	0.62	0.0	0.05	18.01	0.00	2.210	1.49	2.55	0.5	99.5	0.0	-2.32	1.10	0.50	0.89	6.19	3702	468	102	0	72	30	0	logfile
✔	8iRL	35678	2025-02-12	2023-03-19	2.7	2.78	2.75	2.9	0.007	0.68	0.0	0.05	12.79	0.01	2.014	3.36	0.00	2.4	97.6	0.0	0.48	0.67	0.88	3.54	2.9	0.002	0.53	0.0	0.04	14.63	0.00	2.623	2.08	0.58	2.8	97.2	0.0	2.14	0.34	0.66	0.88	2.50	8108	1080	4	0	4	0	0	logfile
✔	8iRM	35679	2025-02-12	2023-03-19	2.6	2.91	2.63	2.9	0.007	0.68	0.0	0.04	13.13	0.00	2.101	7.26	0.00	3.6	96.4	0.0	0.86	0.67	0.89	4.19	2.8	0.002	0.46	0.0	0.04	14.48	0.00	2.451	20.80	0.93	3.0	97.0	0.0	2.50	1.25	0.64	0.89	3.61	8138	1080	8	2	4	2	8	logfile
✔	8GKH	40184	2025-02-12	2023-03-19	2.7	2.25	2.72	2.0	0.002	1.27	0.0	0.10	22.53	0.00	1.881	5.49	0.00	1.2	98.8	0.0	3.05	0.74	0.70	2.48	2.0	0.004	0.67	0.0	0.04	22.66	0.00	1.859	8.16	2.21	1.2	98.8	0.0	0.88	0.55	0.76	0.74	2.16	7570	600	7	125	3	3	0	logfile
✔	8iRJ	35676	2025-02-12	2023-03-17	3.49	2.75	—	3.2	0.007	1.10	0.0	0.06	14.43	0.01	2.027	7.25	1.15	7.0	93.0	0.0	-1.75	0.73	0.73	1.42	3.2	0.003	0.78	0.0	0.04	16.47	0.00	2.610	7.79	2.30	4.5	95.5	0.0	0.19	0.75	0.76	0.78	1.03	8228	1062	2	0	0	0	0	logfile
✔	8oFY	16863	2025-02-12	2023-03-17	3.7	3.51	3.49	3.6	0.009	1.51	0.0	0.07	15.13	0.01	2.159	4.79	2.21	3.7	95.9	0.4	-0.53	0.34	0.62	4.66	3.6	0.003	0.69	0.0	0.04	15.39	0.00	2.178	8.17	2.07	3.9	96.1	0.0	1.67	1.65	0.56	0.78	2.69	7420	976	8	0	4	0	0	logfile
✔	8oFZ	16864	2025-02-12	2023-03-17	3.2	2.79	3.07	3.1	0.010	1.74	0.0	0.07	14.61	0.01	2.314	4.34	5.52	3.3	96.7	0.0	-1.35	0.30	0.60	3.84	3.1	0.004	0.71	0.0	0.04	14.97	0.01	2.551	9.50	1.66	4.5	95.5	0.0	1.23	1.16	0.61	0.84	2.73	7368	976	8	0	8	0	0	logfile
✔	8iQ6	35658	2025-02-12	2023-03-15	3.4	3.65	3.40	3.7	0.004	0.59	0.0	0.05	15.45	0.00	2.254	5.62	0.29	4.1	95.9	0.0	1.39	0.75	0.86	2.60	3.7	0.002	0.49	0.0	0.04	15.48	0.00	2.535	4.01	2.34	3.1	96.8	0.1	1.55	1.13	0.74	0.85	2.19	7059	954	6	0	1	0	0	logfile
✔	8iPS	35642	2025-02-13	2023-03-14	3.6	3.89	3.62	3.8	0.005	0.70	0.0	0.04	18.31	0.01	2.221	8.07	0.21	7.6	92.4	0.0	0.29	0.75	0.82	1.33	3.8	0.003	0.62	0.0	0.04	18.90	0.00	2.552	4.91	3.71	6.6	93.3	0.2	1.01	1.04	0.73	0.81	1.33	9071	1161	3	0	1	0	0	logfile
✔	8Gi1	40059	2025-02-14	2023-03-13	3.65	3.39	3.63	3.8	0.017	1.44	12.0	0.10	11.69	0.01	1.301	10.30	0.86	4.1	95.9	0.0	1.00	0.61	0.69	2.76	3.8	0.003	0.57	0.0	0.04	15.63	0.00	2.325	4.51	2.67	4.6	95.4	0.0	2.41	0.83	0.67	0.78	2.06	9704	1152	8	0	0	0	0	logfile
✔	8ioW	35627	2025-02-11	2023-03-13	3.2	3.42	3.20	3.4	0.007	0.98	0.0	0.06	14.46	0.01	2.272	8.16	0.22	5.5	94.5	0.0	-2.31	0.69	0.79	3.01	3.4	0.003	0.63	0.0	0.04	15.71	0.00	2.463	11.20	1.95	3.6	96.4	0.0	-1.19	0.92	0.70	0.82	2.72	4178	537	5	0	2	0	0	logfile
✔	8Gi9	40063	2025-02-12	2023-03-13	2.84	3.09	2.82	3.1	0.009	1.11	0.0	0.10	15.91	0.00	1.878	8.12	0.00	4.6	95.4	0.0	1.20	0.57	0.79	4.20	3.1	0.003	0.56	0.0	0.04	14.55	0.00	2.532	6.27	1.31	4.2	95.8	0.0	1.60	0.35	0.61	0.81	2.78	6852	720	6	0	39	45	0	logfile
✔	8Gi8	40062	2025-02-12	2023-03-13	2.88	3.11	2.77	3.1	0.010	1.16	0.0	0.09	26.08	0.00	1.935	11.74	0.00	2.1	97.9	0.0	1.50	0.58	0.78	3.81	3.1	0.004	0.65	0.0	0.04	19.15	0.00	2.487	13.21	1.78	3.2	96.8	0.0	1.75	0.43	0.61	0.81	2.51	6990	720	6	0	30	45	0	logfile
✔	8ioD	35616	2025-02-12	2023-03-10	2.59	2.77	2.63	2.8	0.005	0.80	0.0	0.05	14.07	0.01	2.038	13.91	0.00	5.0	95.0	0.0	-0.83	0.53	0.66	2.35	2.8	0.002	0.57	0.0	0.04	16.48	0.00	2.323	8.98	1.72	2.9	97.1	0.0	0.47	0.37	0.52	0.67	1.66	8061	1023	8	0	3	0	0	logfile
✔	8iNR	35601	2025-02-12	2023-03-10	2.73	2.91	2.73	3.0	0.012	0.88	1.0	0.06	13.81	0.00	2.153	12.22	0.00	5.5	94.5	0.0	-1.22	0.50	0.66	2.98	3.0	0.003	0.56	0.0	0.04	16.47	0.00	2.281	6.95	2.54	2.7	97.3	0.0	0.63	0.62	0.58	0.76	2.41	7219	912	6	0	1	0	0	logfile
✔	8ioC	35615	2025-02-12	2023-03-10	2.86	3.83	2.92	3.6	0.007	0.73	0.0	0.05	14.04	0.00	2.197	9.59	0.11	5.7	94.3	0.0	-0.98	0.68	0.77	2.67	3.6	0.004	0.81	0.0	0.04	16.54	0.00	2.360	10.02	2.44	4.1	95.9	0.0	0.60	1.31	0.63	0.78	1.88	8223	1041	7	0	1	0	0	logfile
✔	8oE4	16824	2025-02-14	2023-03-10	3.6	3.08	3.52	3.5	0.005	0.85	0.0	0.05	14.53	0.01	2.196	4.88	0.73	2.9	97.1	0.0	-0.38	0.85	0.77	2.05	3.5	0.003	0.63	0.0	0.04	14.88	0.00	2.515	7.70	1.83	2.4	97.6	0.0	0.04	0.75	0.85	0.78	1.70	9951	1249	7	0	8	0	0	logfile
✔	8iNB	35595	2025-02-11	2023-03-09	3.1	3.32	3.16	3.3	0.003	0.59	0.0	0.04	22.43	0.01	2.235	7.03	0.24	6.9	93.1	0.0	0.01	0.73	0.81	2.62	3.3	0.004	0.56	0.0	0.04	22.27	0.01	2.446	3.96	3.07	7.5	92.5	0.0	0.71	0.98	0.71	0.84	3.02	5321	498	4	65	0	0	0	logfile
✔	8GH8	40036	2025-02-11	2023-03-09	4.3	4.08	3.85	4.0	0.004	0.79	0.0	0.05	26.60	0.01	2.219	10.05	0.23	12.7	86.8	0.5	-3.65	0.48	0.44	—	4.0	0.003	0.71	0.0	0.04	26.17	0.01	2.494	8.36	0.00	10.7	89.1	0.2	-3.66	1.06	0.53	0.51	—	6991	559	8	136	0	0	0	logfile
✔	8GHC	40040	2025-02-14	2023-03-09	2.3	2.71	—	2.6	0.009	0.91	0.0	0.06	12.96	0.01	2.067	5.41	0.09	2.1	97.9	0.0	-1.43	0.75	0.86	4.85	2.6	0.005	0.63	0.0	0.04	15.47	0.00	2.531	7.94	1.60	1.7	98.3	0.0	0.88	0.42	0.77	0.88	4.78	10512	1310	4	0	2	0	0	logfile

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