Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8iNB	35595	2025-02-11	2023-03-09	3.1	3.32	3.16	3.3	0.003	0.59	0.0	0.04	22.43	0.01	2.235	7.03	0.24	6.9	93.1	0.0	0.01	0.73	0.81	2.62	3.3	0.004	0.56	0.0	0.04	22.27	0.01	2.446	3.96	3.07	7.5	92.5	0.0	0.71	0.98	0.71	0.84	3.02	5321	498	4	65	0	0	0	logfile
✔	8GGZ	40026	2025-02-10	2023-03-08	3.9	4.07	4.00	4.1	0.004	0.58	0.0	0.04	12.74	0.00	2.278	5.13	0.00	1.4	98.6	0.0	2.26	0.51	0.78	2.26	4.1	0.003	0.54	0.0	0.04	15.24	0.00	2.619	3.51	5.73	2.2	97.8	0.0	2.51	0.37	0.52	0.80	1.95	1994	281	2	0	1	0	0	logfile
✔	8CRB	16807	2025-02-12	2023-03-08	4.6	4.12	4.59	4.0	0.013	1.98	2.0	0.10	14.75	0.02	2.540	0.58	1.23	10.1	88.0	1.9	-2.65	0.72	0.61	—	4.0	0.004	0.76	0.0	0.04	13.44	0.01	2.334	13.04	0.00	13.7	85.9	0.3	-2.50	1.44	0.73	0.62	—	8665	582	3	0	0	0	4286	logfile
✔	8GH0	40027	2025-02-10	2023-03-08	4.0	4.14	4.05	4.2	0.004	0.65	0.0	0.04	13.37	0.00	2.374	4.72	0.00	0.7	99.3	0.0	0.89	0.51	0.79	—	4.2	0.003	0.59	0.0	0.04	15.92	0.00	2.501	3.89	7.24	1.4	98.6	0.0	1.96	0.99	0.52	0.80	—	1954	281	2	0	1	0	0	logfile
✔	8GGS	40019	2025-02-10	2023-03-08	3.5	3.60	3.45	3.7	0.004	0.56	0.0	0.04	12.38	0.00	2.292	2.18	0.00	0.4	99.6	0.0	2.32	0.52	0.82	2.36	3.6	0.003	0.49	0.0	0.04	14.72	0.00	2.559	1.94	3.40	1.8	98.2	0.0	2.82	0.33	0.50	0.82	1.20	2114	281	2	0	1	0	0	logfile
✔	8GH1	40028	2025-02-10	2023-03-08	4.1	4.27	4.19	4.3	0.004	0.57	0.0	0.04	12.64	0.00	2.249	3.87	0.00	3.2	96.8	0.0	1.62	0.52	0.78	—	4.2	0.004	0.65	0.0	0.04	12.09	0.00	2.609	4.42	0.00	3.2	96.8	0.0	1.59	0.41	0.52	0.80	—	1976	281	2	0	1	0	0	logfile
✔	8GGT	40020	2025-02-10	2023-03-08	3.5	3.61	3.44	3.7	0.004	0.70	0.0	0.04	13.41	0.00	2.240	4.15	0.00	2.5	97.5	0.0	1.88	0.49	0.81	2.09	3.7	0.003	0.53	0.0	0.04	14.51	0.00	2.611	1.71	1.50	1.4	98.6	0.0	2.61	0.89	0.49	0.81	1.61	2105	281	2	0	1	0	0	logfile
✔	8GGR	40018	2025-02-10	2023-03-08	3.4	3.49	3.38	3.6	0.004	0.54	0.0	0.04	13.10	0.00	2.387	2.60	0.00	1.8	98.2	0.0	1.94	0.51	0.84	2.68	3.6	0.003	0.51	0.0	0.04	14.65	0.00	2.517	2.37	1.85	1.8	98.2	0.0	2.21	0.23	0.51	0.84	2.68	2143	281	2	0	1	1	0	logfile
✔	8GGY	40025	2025-02-10	2023-03-08	3.9	4.01	3.93	4.0	0.004	0.63	0.0	0.04	14.74	0.00	2.358	3.48	0.00	1.8	98.2	0.0	2.19	0.50	0.80	2.56	4.1	0.003	0.59	0.0	0.04	16.40	0.00	2.563	3.48	4.66	2.5	97.5	0.0	2.32	0.40	0.51	0.82	1.44	2096	281	2	0	1	0	0	logfile
✔	8GGV	40022	2025-02-10	2023-03-08	3.5	3.67	3.59	3.8	0.004	0.59	0.0	0.04	13.63	0.00	2.276	4.79	0.00	1.8	98.2	0.0	2.06	0.49	0.81	1.78	3.8	0.003	0.57	0.0	0.04	16.59	0.00	2.400	4.04	5.95	1.8	98.2	0.0	2.48	0.32	0.50	0.81	1.14	2064	281	2	0	1	0	0	logfile
✔	8GGW	40023	2025-02-10	2023-03-08	3.6	3.67	3.57	3.8	0.004	0.62	0.0	0.04	12.73	0.00	2.241	5.30	0.00	1.8	98.2	0.0	2.12	0.48	0.79	1.29	3.8	0.002	0.55	0.0	0.04	15.01	0.00	2.567	2.78	2.66	1.4	98.6	0.0	2.52	0.36	0.50	0.79	1.27	2079	281	2	0	1	0	0	logfile
✔	8GGQ	40017	2025-02-10	2023-03-08	3.4	3.52	3.32	3.5	0.004	0.55	0.0	0.04	12.05	0.00	2.313	2.87	0.00	0.7	99.3	0.0	2.40	0.54	0.85	2.97	3.5	0.002	0.46	0.0	0.04	13.56	0.00	2.555	1.92	2.40	0.4	99.6	0.0	3.20	0.25	0.52	0.84	2.57	2130	281	2	0	1	0	0	logfile
✔	8GGo	40015	2025-02-10	2023-03-08	3.2	3.33	3.17	3.4	0.005	0.74	0.0	0.05	11.58	0.00	2.307	3.67	0.00	1.5	98.5	0.0	2.30	0.50	0.84	3.84	3.4	0.003	0.50	0.0	0.04	12.94	0.00	2.588	1.96	0.99	1.8	98.2	0.0	2.40	0.89	0.50	0.84	2.98	2095	279	2	0	1	0	0	logfile
✔	8GGN	40014	2025-02-10	2023-03-08	3.3	3.42	3.22	3.4	0.005	0.58	0.0	0.04	13.18	0.00	2.248	2.82	0.00	0.7	99.3	0.0	2.26	0.55	0.86	3.24	3.4	0.004	0.51	0.0	0.04	14.70	0.00	2.595	1.65	2.80	1.4	98.6	0.0	2.91	0.25	0.55	0.86	2.73	2168	285	2	0	1	0	0	logfile
✔	8GG7	29997	2025-02-11	2023-03-08	3.3	3.58	3.34	3.6	0.003	0.50	0.0	0.04	13.74	0.00	2.288	4.04	0.16	1.7	98.3	0.0	0.88	0.69	0.86	3.05	3.5	0.002	0.49	0.0	0.04	14.90	0.00	2.436	3.03	1.11	1.5	98.5	0.0	1.28	0.91	0.68	0.86	3.25	6687	903	6	0	2	1	0	logfile
✔	8GG0	29990	2025-02-11	2023-03-08	2.9	3.26	3.07	3.2	0.003	0.51	0.0	0.04	13.40	0.00	2.215	2.06	0.00	1.7	98.3	0.0	0.54	0.55	0.82	4.19	3.2	0.003	0.50	0.0	0.04	15.33	0.00	2.497	1.76	1.21	1.4	98.6	0.0	1.48	0.28	0.62	0.87	3.99	6745	897	6	0	2	5	0	logfile
✔	8GGP	40016	2025-02-10	2023-03-08	3.2	3.39	3.22	3.5	0.004	0.52	0.0	0.04	12.49	0.00	2.298	2.48	0.00	1.1	98.9	0.0	1.89	0.51	0.84	4.06	3.5	0.004	0.51	0.0	0.04	13.78	0.00	2.633	1.24	2.58	1.4	98.6	0.0	2.34	0.24	0.52	0.85	3.29	2075	280	2	0	1	0	0	logfile
✔	8GGL	40012	2025-02-10	2023-03-08	3.2	3.43	3.25	3.4	0.005	0.62	0.0	0.04	12.38	0.00	2.312	3.08	0.00	1.1	98.9	0.0	1.05	0.54	0.86	2.40	3.4	0.003	0.50	0.0	0.04	14.04	0.00	2.614	1.66	3.76	1.1	98.9	0.0	1.92	0.19	0.53	0.86	1.96	2151	284	2	0	1	1	0	logfile
✔	8GGU	40021	2025-02-10	2023-03-08	3.4	3.47	3.35	3.6	0.004	0.55	0.0	0.04	13.54	0.00	2.284	4.08	0.00	1.1	98.9	0.0	1.90	0.46	0.76	1.61	3.6	0.003	0.48	0.0	0.04	15.39	0.00	2.644	1.02	4.97	0.7	99.3	0.0	2.36	0.30	0.46	0.77	1.17	2053	281	2	0	1	0	0	logfile
✔	8GGA	40000	2025-02-12	2023-03-08	3.5	3.68	3.45	3.6	0.004	0.67	0.0	0.04	14.50	0.00	2.215	3.89	0.00	3.3	96.7	0.0	-0.34	0.69	0.83	2.47	3.6	0.004	0.56	0.0	0.04	15.17	0.00	2.464	3.35	1.49	3.7	96.3	0.0	0.42	0.93	0.68	0.84	2.65	6995	986	6	0	2	0	0	logfile

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