Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8UMX	42387	2024-04-06	2023-10-18	4.0	5.63	3.86	4.0	0.003	0.77	0.0	0.04	17.12	0.00	2.173	17.66	0.50	5.0	94.9	0.1	-0.01	0.52	0.81	—	4.0	0.002	0.73	0.0	0.04	17.36	0.00	2.157	16.08	2.39	4.1	95.7	0.1	0.58	1.74	0.54	0.85	—	7166	906	6	0	0	0	0	logfile
✔	8UMD	42376	2024-04-06	2023-10-17	3.6	4.61	3.60	3.7	0.003	0.72	0.0	0.04	16.78	0.01	2.098	13.27	0.50	4.9	94.8	0.3	0.54	0.50	0.80	0.85	3.7	0.003	0.76	0.0	0.04	17.13	0.00	2.101	16.96	3.26	4.9	94.8	0.3	0.75	1.76	0.51	0.85	0.71	7201	911	6	0	0	0	0	logfile
✔	8WRZ	37795	2024-04-06	2023-10-16	3.6	3.01	3.76	2.2	0.010	0.95	0.0	0.05	12.85	0.01	2.192	18.51	0.13	5.7	94.3	0.0	-0.57	0.68	0.68	0.98	2.2	0.003	0.81	0.0	0.05	16.29	0.00	2.139	18.15	5.01	4.8	95.2	0.0	-0.26	1.60	0.69	0.69	1.11	6914	874	6	0	1	0	0	logfile
✔	8ULG	42358	2024-04-08	2023-10-16	3.2	4.33	3.21	3.6	0.003	0.56	0.0	0.04	18.17	0.00	2.079	5.55	0.06	3.7	96.3	0.1	1.30	0.93	0.87	2.23	3.6	0.002	0.55	0.0	0.04	18.03	0.00	2.066	7.47	1.13	3.5	96.5	0.0	1.54	1.42	0.94	0.89	1.87	14635	1789	6	0	8	0	0	logfile
✔	8WRo	37784	2024-04-13	2023-10-15	3.9	4.30	3.87	4.0	0.004	0.79	0.0	0.05	18.35	0.01	2.237	8.70	0.33	8.4	91.4	0.1	-2.06	0.79	0.69	0.35	4.0	0.003	0.68	0.0	0.04	18.45	0.00	2.129	16.33	2.93	6.8	93.1	0.1	-1.46	1.88	0.83	0.81	1.04	29807	3780	4	0	0	0	0	logfile
✔	8WRL	37779	2024-04-06	2023-10-15	3.36	3.59	3.33	3.7	0.004	0.70	0.0	0.05	19.51	0.00	1.771	9.25	0.58	4.5	95.5	0.0	-0.27	0.54	0.77	1.66	3.7	0.003	0.51	0.0	0.04	17.32	0.00	2.222	8.85	4.18	3.7	96.3	0.0	0.43	0.34	0.52	0.77	1.34	6472	790	4	0	5	0	0	logfile
✔	8WRM	37781	2024-04-14	2023-10-15	4.34	4.58	4.54	4.2	0.004	0.89	0.0	0.05	14.47	0.01	2.196	7.52	0.03	8.4	91.5	0.1	-2.50	0.80	0.76	—	4.2	0.003	0.66	0.0	0.04	14.26	0.00	2.093	17.10	0.12	9.4	90.5	0.1	-1.48	0.71	0.81	0.78	—	29931	3793	4	0	0	0	0	logfile
✔	8WRH	37776	2024-04-06	2023-10-14	3.08	3.33	3.08	3.4	0.004	0.68	1.0	0.05	18.70	0.00	2.151	9.11	0.00	4.8	94.8	0.4	0.28	0.61	0.83	2.27	3.4	0.003	0.52	0.0	0.04	17.71	0.00	2.098	7.68	1.30	5.0	95.0	0.0	0.95	0.88	0.59	0.82	1.94	6459	790	3	0	4	0	0	logfile
✔	8UKM	42355	2024-04-12	2023-10-14	4.2	4.65	4.50	4.5	0.004	0.75	0.0	0.05	13.15	0.01	2.220	21.35	0.00	4.5	95.5	0.0	0.17	0.81	0.81	—	4.5	0.003	0.72	0.0	0.05	13.20	0.01	2.230	19.03	0.00	4.9	95.1	0.0	0.28	0.57	0.82	0.82	—	26184	3528	24	0	0	0	0	logfile
✔	8WRB	37771	2024-04-06	2023-10-13	2.91	3.14	3.03	3.2	0.002	0.49	0.0	0.04	9.42	0.00	2.218	4.00	1.06	1.3	98.7	0.0	1.02	0.57	0.80	3.66	3.2	0.003	0.51	0.0	0.04	13.39	0.00	2.063	6.52	3.27	1.7	98.3	0.0	1.85	1.16	0.57	0.81	2.90	8842	1135	6	0	2	0	0	logfile
✔	8WQR	37752	2024-04-07	2023-10-12	3.08	4.11	3.07	3.5	0.003	0.58	0.0	0.04	12.19	0.00	2.166	13.13	0.00	6.8	93.0	0.2	-2.46	0.81	0.66	1.89	3.5	0.004	0.69	0.0	0.05	14.11	0.00	2.144	15.84	2.60	8.4	91.4	0.1	-2.82	0.45	0.82	0.69	1.46	9681	1415	2	0	0	0	0	logfile
✔	8WQA	37736	2024-04-15	2023-10-11	3.39	3.69	3.48	3.6	0.003	0.64	0.0	0.04	14.89	0.00	2.059	9.55	0.14	4.9	95.1	0.0	-0.70	0.79	0.79	2.00	3.6	0.003	0.57	0.0	0.04	16.20	0.00	2.041	12.32	1.54	5.0	95.0	0.0	0.38	0.34	0.78	0.76	1.77	26479	3301	14	0	6	0	0	logfile
✔	8WQE	37742	2024-04-15	2023-10-11	3.38	3.75	3.42	3.7	0.003	0.56	0.0	0.04	14.84	0.00	2.173	8.55	0.07	5.1	94.9	0.0	-0.73	0.72	0.71	2.00	3.7	0.004	0.59	0.0	0.04	16.59	0.00	1.472	13.24	2.45	5.6	94.4	0.0	0.01	1.00	0.77	0.82	1.79	26301	3275	14	0	6	0	0	logfile
✔	8WQC	37739	2024-04-15	2023-10-11	3.54	3.77	3.57	3.7	0.003	0.58	0.0	0.04	14.71	0.00	2.135	9.58	0.07	5.6	94.4	0.0	-1.33	0.78	0.76	1.75	3.7	0.004	0.66	0.0	0.04	16.39	0.00	2.033	15.54	1.81	6.3	93.7	0.0	-0.47	0.96	0.79	0.79	1.55	26832	3393	14	0	6	0	0	logfile
✔	8WQD	37740	2024-04-05	2023-10-11	3.55	3.74	3.53	3.7	0.004	0.62	0.0	0.04	14.56	0.01	2.266	8.72	0.00	6.9	93.1	0.0	-0.78	0.67	0.83	2.91	3.7	0.004	1.08	1.0	0.05	16.68	0.00	2.237	11.99	2.55	7.1	92.9	0.0	0.58	0.30	0.67	0.83	1.88	5046	641	2	0	0	0	0	logfile
✔	8WQi	37746	2024-04-05	2023-10-11	3.5	3.71	3.53	3.7	0.003	0.62	0.0	0.04	14.51	0.00	2.188	9.29	0.00	10.2	89.8	0.0	-1.75	0.63	0.82	1.38	3.7	0.004	0.67	0.0	0.04	16.80	0.00	2.077	14.72	2.37	10.5	89.5	0.0	-0.75	0.52	0.66	0.82	0.91	5074	644	2	0	0	0	0	logfile
✔	8WQH	37745	2024-04-14	2023-10-11	3.44	3.76	3.60	3.7	0.003	0.54	0.0	0.04	14.59	0.00	2.051	8.46	0.00	5.1	94.9	0.0	-0.88	0.78	0.81	2.08	3.7	0.003	0.57	0.0	0.04	16.23	0.00	2.055	12.37	1.50	5.3	94.7	0.0	0.30	0.66	0.80	0.84	1.87	24811	3091	14	0	6	0	0	logfile
✔	8WQG	37744	2024-04-15	2023-10-11	4.09	4.33	4.11	4.2	0.003	0.60	0.0	0.04	14.75	0.00	2.082	10.99	0.03	6.6	93.4	0.0	-0.87	0.79	0.74	—	4.2	0.007	0.81	0.0	0.05	14.58	0.00	1.925	24.20	0.00	7.8	92.0	0.1	-0.96	1.38	0.80	0.74	—	26832	3393	14	0	6	0	0	logfile
✔	8WQF	37743	2024-04-13	2023-10-11	3.27	3.60	3.33	3.6	0.004	0.60	0.0	0.04	14.92	0.00	2.199	8.04	0.00	6.4	93.6	0.0	-0.93	0.60	0.57	2.34	3.6	0.003	0.58	0.0	0.04	16.85	0.00	2.172	12.33	1.77	6.0	94.0	0.0	-0.12	0.98	0.73	0.82	1.84	23404	2901	13	0	6	0	0	logfile
✔	8WQB	37737	2024-04-14	2023-10-11	3.37	3.62	3.41	3.6	0.003	0.64	0.0	0.04	14.73	0.00	2.043	7.37	0.00	5.9	94.1	0.0	-1.53	0.74	0.74	2.31	3.6	0.004	0.60	0.0	0.04	16.48	0.00	2.049	13.10	2.07	6.1	93.8	0.0	0.09	0.52	0.78	0.84	1.92	26255	3265	13	0	6	0	0	logfile

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