Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8WPG	37716	2024-04-08	2023-10-10	2.7	2.92	—	3.0	0.004	0.60	0.0	0.04	16.88	0.00	2.163	9.08	0.08	4.2	95.8	0.0	-0.13	0.64	0.80	3.33	2.9	0.004	0.58	0.0	0.04	16.82	0.00	2.156	8.41	3.82	4.6	95.4	0.0	-0.08	0.27	0.65	0.81	3.25	12443	1608	10	0	21	0	0	logfile
✔	8UiS	42303	2024-04-12	2023-10-10	3.23	4.61	3.55	3.6	0.006	0.85	0.0	0.05	15.72	0.01	2.049	4.32	0.58	3.9	96.1	0.0	-0.89	0.85	0.68	1.73	3.6	0.009	0.68	0.0	0.04	16.48	0.00	1.852	11.10	1.33	4.8	95.2	0.0	0.08	0.58	0.88	0.81	1.49	79960	4843	25	79	9	0	39727	logfile
✔	8WPU	37724	2024-04-10	2023-10-10	3.1	2.87	—	3.2	0.004	0.59	0.0	0.04	16.87	0.00	2.163	9.80	0.00	4.6	95.4	0.0	-0.69	0.76	0.82	2.08	3.2	0.004	0.59	0.0	0.04	16.24	0.00	2.125	10.35	4.84	5.5	94.5	0.0	-0.77	0.32	0.76	0.83	2.23	18794	2455	10	0	22	0	0	logfile
✔	8WPF	37715	2024-04-09	2023-10-10	3.0	3.03	2.90	3.0	0.009	1.14	0.0	0.06	17.29	0.01	2.020	6.69	0.00	2.9	97.1	0.0	-1.58	0.70	0.72	2.81	3.0	0.004	0.62	0.0	0.04	18.98	0.00	1.923	17.54	2.00	3.3	96.7	0.0	-0.02	0.57	0.75	0.82	3.37	16896	1908	11	73	1	0	0	logfile
✔	8WPK	37717	2024-04-09	2023-10-10	2.7	2.77	2.62	2.7	0.007	0.88	0.0	0.06	17.19	0.01	2.082	5.65	0.00	2.8	97.2	0.1	-1.51	0.73	0.77	3.55	2.7	0.005	0.62	0.0	0.04	18.81	0.00	1.848	13.28	2.17	2.6	97.4	0.0	0.45	0.96	0.76	0.82	3.83	16854	1909	11	70	1	0	0	logfile
✔	8QSN	18637	2024-04-05	2023-10-10	3.54	4.23	3.52	4.0	0.002	0.48	0.0	0.03	10.37	0.00	2.269	4.15	3.75	3.5	96.5	0.0	2.22	0.55	0.76	0.70	4.0	0.003	0.87	0.0	0.04	15.50	0.00	2.062	16.31	2.68	3.5	96.5	0.0	1.78	1.45	0.56	0.77	1.37	3579	464	1	0	0	0	0	logfile
✔	8QSM	18636	2024-04-05	2023-10-10	3.69	4.23	3.52	4.0	0.002	0.48	0.0	0.03	10.37	0.00	2.269	4.15	3.75	3.5	96.5	0.0	2.22	0.55	0.76	0.70	4.0	0.003	0.87	0.0	0.04	15.54	0.00	2.035	14.93	3.49	3.5	96.5	0.0	1.79	1.46	0.56	0.78	1.37	3579	464	1	0	0	0	0	logfile
✔	8QSK	18634	2024-04-06	2023-10-10	3.3	3.77	3.34	3.6	0.003	0.63	0.0	0.04	12.96	0.01	2.235	7.41	1.59	6.9	92.9	0.2	1.79	0.77	0.75	0.74	3.6	0.003	0.62	0.0	0.04	14.51	0.00	2.185	7.87	3.41	7.2	92.8	0.0	2.18	0.86	0.79	0.79	1.62	8506	1046	4	0	16	0	0	logfile
✔	8WPE	37714	2024-04-09	2023-10-10	2.7	2.83	2.70	2.8	0.007	0.98	2.0	0.06	17.15	0.01	2.147	4.40	0.00	2.9	97.0	0.1	-1.50	0.64	0.64	2.96	2.8	0.004	0.62	0.0	0.04	18.89	0.00	1.950	14.48	2.24	3.1	96.7	0.3	0.34	1.94	0.72	0.78	3.59	16745	1898	11	69	1	0	0	logfile
✔	8QSL	18635	2024-04-06	2023-10-10	2.81	3.65	2.98	3.5	0.004	0.67	0.0	0.04	15.58	0.00	1.968	13.05	0.12	8.7	91.3	0.0	1.51	0.61	0.78	1.49	3.5	0.004	0.91	0.0	0.05	15.65	0.00	2.186	12.59	3.17	7.1	92.9	0.0	1.06	1.17	0.58	0.77	1.09	8506	1046	4	0	16	0	0	logfile
✔	8WPP	37722	2024-04-09	2023-10-10	3.1	3.23	3.06	3.2	0.005	0.84	0.0	0.05	17.00	0.01	2.245	5.50	0.06	3.0	97.0	0.0	-1.85	0.70	0.74	2.73	3.2	0.003	0.60	1.0	0.04	18.31	0.00	2.171	14.18	1.77	3.4	96.6	0.0	0.16	0.51	0.72	0.82	2.82	16826	1909	9	69	0	0	0	logfile
✔	8Ui0	42285	2024-04-13	2023-10-09	2.7	4.01	2.95	3.2	0.005	0.83	0.0	0.05	15.38	0.01	1.815	3.64	0.77	3.2	96.8	0.0	-0.69	0.83	0.76	2.49	3.1	0.009	0.67	0.0	0.04	16.16	0.00	1.891	8.94	0.83	4.9	95.1	0.0	0.45	0.57	0.85	0.82	2.20	89341	5416	26	81	9	0	44435	logfile
✔	8UHE	42278	2024-04-12	2023-10-09	2.78	2.06	2.93	2.1	0.010	1.17	0.0	0.06	19.11	0.01	2.105	13.49	4.23	2.9	96.9	0.2	-0.61	0.60	0.61	1.53	2.1	0.004	0.76	0.0	0.04	19.10	0.00	2.088	20.02	5.48	3.1	96.7	0.2	0.80	1.05	0.61	0.64	1.78	27048	3369	37	0	19	0	0	logfile
✔	8UHG	42280	2024-04-13	2023-10-09	2.7	4.01	2.95	3.2	0.005	0.83	0.0	0.05	15.44	0.01	1.840	3.57	0.77	3.6	96.4	0.0	-0.74	0.83	0.75	2.50	3.2	0.004	0.57	0.0	0.04	16.20	0.00	1.839	8.68	0.69	4.5	95.5	0.0	0.43	0.55	0.85	0.81	2.27	89307	5416	26	80	9	0	44423	logfile
✔	8Ui2	42286	2024-04-12	2023-10-09	2.73	3.05	2.90	3.1	0.004	0.52	0.0	0.04	17.61	0.01	2.187	5.03	1.35	3.5	96.5	0.0	-0.39	0.70	0.83	2.89	3.1	0.003	0.53	0.0	0.04	18.07	0.00	2.171	4.40	1.58	2.1	97.9	0.0	0.69	1.13	0.62	0.78	2.70	26568	3492	24	0	0	0	0	logfile
✔	8UHF	42279	2024-04-08	2023-10-09	3.8	3.77	—	1.7	0.002	0.49	0.0	0.04	12.21	0.00	2.126	10.07	0.00	3.0	97.0	0.0	-1.49	0.62	0.79	0.57	1.6	0.003	0.78	0.0	0.04	15.72	0.00	2.146	18.48	2.99	3.7	96.3	0.0	0.18	0.89	0.63	0.80	0.04	12411	1739	9	0	0	0	0	logfile
✔	8WP9	37713	2024-04-11	2023-10-09	2.49	2.89	2.62	2.9	0.005	0.95	0.0	0.06	15.19	0.01	2.315	2.53	1.00	0.9	99.1	0.0	1.51	0.64	0.73	1.41	2.8	0.003	0.58	0.0	0.05	18.85	0.00	2.227	3.97	3.29	1.0	99.0	0.0	2.50	1.29	0.72	0.88	2.76	21432	2760	24	0	0	0	0	logfile
✔	8WoZ	37703	2024-04-05	2023-10-08	3.25	2.47	3.32	2.2	0.003	0.70	1.0	0.04	16.32	0.01	2.147	10.00	0.15	5.8	94.2	0.0	-0.58	0.75	0.72	1.58	2.1	0.003	0.67	0.0	0.04	17.08	0.01	2.147	8.53	2.23	6.3	93.7	0.0	-0.20	0.43	0.76	0.75	1.18	6244	768	3	0	1	0	0	logfile
✔	8UHD	42270	2024-04-14	2023-10-08	2.8	4.01	2.94	3.0	0.006	0.92	0.0	0.05	15.57	0.01	1.320	4.23	0.84	3.9	96.1	0.0	-0.74	0.84	0.76	2.46	3.1	0.005	0.57	0.0	0.04	16.10	0.00	1.913	8.89	0.79	4.6	95.4	0.0	0.64	0.52	0.86	0.82	2.28	94654	5749	28	81	10	0	47094	logfile
✔	8UHA	42267	2024-04-14	2023-10-08	3.5	4.60	3.79	3.8	0.005	0.83	0.0	0.05	15.35	0.01	1.567	4.34	0.77	3.7	96.3	0.0	-1.08	0.81	0.64	0.78	3.8	0.009	0.67	0.0	0.04	16.30	0.01	1.782	12.89	1.34	6.2	93.8	0.0	-0.26	0.59	0.83	0.77	0.65	94684	5749	29	81	10	0	47123	logfile

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