Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8UHA	42267	2024-04-14	2023-10-08	3.5	4.60	3.79	3.8	0.005	0.83	0.0	0.05	15.35	0.01	1.567	4.34	0.77	3.7	96.3	0.0	-1.08	0.81	0.64	0.78	3.8	0.009	0.67	0.0	0.04	16.30	0.01	1.782	12.89	1.34	6.2	93.8	0.0	-0.26	0.59	0.83	0.77	0.65	94684	5749	29	81	10	0	47123	logfile
✔	8WP0	37705	2024-04-07	2023-10-08	3.4	3.57	3.31	3.5	0.005	1.11	2.0	0.06	11.22	0.01	1.379	2.88	0.00	7.8	92.2	0.0	-6.50	0.67	0.82	3.23	3.5	0.003	0.66	0.0	0.04	14.44	0.00	2.038	5.81	1.53	7.2	92.8	0.0	-2.83	0.66	0.67	0.85	2.23	9372	1217	2	0	4	0	0	logfile
✔	8WoZ	37703	2024-04-05	2023-10-08	3.25	2.47	3.32	2.2	0.003	0.70	1.0	0.04	16.32	0.01	2.147	10.00	0.15	5.8	94.2	0.0	-0.58	0.75	0.72	1.58	2.1	0.003	0.67	0.0	0.04	17.08	0.01	2.147	8.53	2.23	6.3	93.7	0.0	-0.20	0.43	0.76	0.75	1.18	6244	768	3	0	1	0	0	logfile
✔	8WoR	37696	2024-04-07	2023-10-07	2.66	3.15	2.79	3.1	0.004	0.64	0.0	0.04	15.74	0.01	1.928	22.33	5.08	3.5	96.4	0.2	1.60	0.56	0.78	2.67	3.1	0.005	0.93	1.0	0.05	15.14	0.00	1.898	7.18	3.79	4.7	95.1	0.2	0.85	0.90	0.64	0.84	3.02	11218	1294	10	0	35	4	0	logfile
✔	8WoQ	37695	2024-04-07	2023-10-07	2.85	3.57	2.89	3.4	0.004	0.82	0.0	0.05	15.76	0.01	2.046	7.66	3.96	4.8	95.1	0.1	1.00	0.65	0.84	3.05	3.4	0.003	0.72	0.0	0.04	14.90	0.00	2.025	6.69	1.55	4.5	95.4	0.1	1.14	0.89	0.65	0.84	3.09	11218	1294	10	0	35	4	0	logfile
✔	8Woi	37690	2024-04-07	2023-10-07	3.4	3.58	3.35	3.6	0.005	1.20	6.0	0.06	10.49	0.01	1.818	2.83	0.10	9.1	90.8	0.1	-6.42	0.68	0.83	3.78	3.6	0.003	0.66	0.0	0.04	13.82	0.00	2.220	5.88	1.42	8.2	91.8	0.0	-2.70	0.64	0.68	0.85	2.53	9324	1217	1	0	0	0	0	logfile
✔	8WoS	37697	2024-04-07	2023-10-07	3.37	3.88	3.39	3.8	0.003	0.55	0.0	0.04	18.35	0.00	1.943	39.41	0.35	6.4	93.6	0.0	1.07	0.65	0.80	1.91	3.8	0.004	0.70	0.0	0.05	17.23	0.00	2.091	10.46	4.24	6.0	93.9	0.2	0.37	0.93	0.65	0.80	1.79	10672	1272	8	0	22	0	0	logfile
✔	8WoM	37692	2024-04-07	2023-10-07	3.5	3.76	3.53	3.7	0.005	1.04	5.0	0.07	11.19	0.01	1.004	3.36	0.00	9.1	90.9	0.0	-6.42	0.66	0.82	2.93	3.7	0.002	0.63	0.0	0.04	13.91	0.00	2.164	5.39	1.94	7.0	93.0	0.0	-3.03	0.72	0.66	0.82	1.77	9348	1217	2	0	1	0	0	logfile
✔	8Woo	37694	2024-04-07	2023-10-07	3.9	4.05	3.88	4.0	0.005	1.14	7.0	0.08	13.30	0.01	1.870	6.21	0.00	7.3	92.7	0.0	-6.18	0.64	0.81	2.72	4.0	0.003	0.67	0.0	0.04	15.15	0.00	2.087	7.38	2.45	6.3	93.7	0.0	-3.04	0.80	0.65	0.82	1.43	9412	1217	2	0	5	0	0	logfile
✔	8WoT	37698	2024-04-07	2023-10-07	3.18	3.73	3.22	3.7	0.003	0.52	0.0	0.04	17.95	0.00	2.020	30.44	0.27	5.3	94.7	0.0	1.30	0.67	0.84	2.00	3.7	0.006	0.75	0.0	0.05	16.55	0.00	2.145	11.07	3.71	6.8	93.0	0.2	0.11	0.30	0.67	0.84	2.31	10672	1272	8	0	22	0	0	logfile
✔	8Wo7	37681	2024-04-06	2023-10-06	2.9	3.17	2.85	3.2	0.007	0.69	0.0	0.04	13.01	0.00	2.107	7.94	0.00	2.7	97.3	0.0	1.23	0.64	0.86	2.77	3.2	0.003	0.57	0.0	0.04	15.01	0.00	2.153	7.63	1.75	3.7	96.3	0.0	2.04	0.35	0.62	0.86	2.20	8118	1080	4	0	4	0	0	logfile
✔	8UH4	42246	2024-04-06	2023-10-06	3.72	4.54	4.34	4.4	0.008	0.78	0.0	0.05	15.20	0.01	2.146	13.85	0.00	2.4	97.2	0.5	-2.44	0.80	0.84	3.98	4.4	0.005	0.92	1.0	0.04	17.87	0.00	1.719	16.02	3.97	4.2	95.8	0.0	-2.00	0.64	0.76	0.79	3.44	110100	12780	120	540	0	0	0	logfile
✔	8UGS	42234	2024-04-08	2023-10-06	3.2	3.34	3.06	3.6	0.003	0.53	0.0	0.04	17.88	0.00	2.028	5.60	0.20	3.3	96.6	0.1	1.44	0.86	0.84	1.76	3.5	0.003	0.55	0.0	0.04	18.22	0.00	1.936	7.91	2.10	3.8	96.2	0.1	1.27	0.50	0.86	0.84	1.91	13961	1701	6	0	8	0	0	logfile
✔	8UGB	42220	2024-04-08	2023-10-05	3.0	3.67	3.01	3.4	0.015	0.83	0.0	0.05	16.73	0.01	1.862	7.91	1.27	5.1	94.6	0.3	0.78	0.90	0.88	3.17	3.4	0.003	0.59	0.0	0.04	16.64	0.00	1.904	8.80	1.40	5.1	94.6	0.3	1.23	0.30	0.90	0.87	2.93	13726	1669	6	0	8	0	0	logfile
✔	8UFi	42208	2024-04-08	2023-10-04	3.1	3.94	3.11	3.5	0.003	0.55	0.0	0.04	17.77	0.00	1.947	7.98	0.19	3.5	96.3	0.2	1.71	0.93	0.89	2.83	3.5	0.004	0.55	0.0	0.04	17.96	0.00	1.904	8.54	1.35	3.8	96.0	0.2	1.80	1.82	0.92	0.88	2.36	14157	1734	6	0	6	0	0	logfile
✔	8WMQ	37658	2024-04-09	2023-10-04	3.3	2.84	3.57	3.5	0.004	1.07	0.0	0.04	14.04	0.01	2.060	5.60	0.00	3.3	96.7	0.0	0.89	0.62	0.80	1.20	3.5	0.004	1.01	0.0	0.04	14.58	0.01	1.949	6.15	1.28	6.4	93.6	0.0	0.82	0.99	0.63	0.84	1.48	16348	1080	6	0	6	0	8208	logfile
✔	8UFB	42190	2024-04-15	2023-10-04	3.89	4.22	4.06	4.2	0.003	0.57	0.0	0.05	10.02	0.01	2.207	1.76	0.00	2.5	97.5	0.0	0.76	0.53	0.64	2.08	4.2	0.005	0.68	1.0	0.05	14.11	0.00	1.955	10.17	2.64	4.0	96.0	0.0	0.38	2.03	0.52	0.75	2.28	34656	4476	36	0	20	0	0	logfile
✔	8UFG	42206	2024-04-06	2023-10-04	3.1	3.39	3.15	3.4	0.008	0.93	0.0	0.14	16.01	0.00	1.993	9.29	0.11	2.0	98.0	0.0	1.04	0.62	0.85	2.46	3.4	0.003	0.65	0.0	0.07	15.91	0.00	2.224	9.34	1.05	2.2	97.8	0.0	0.88	1.21	0.54	0.84	2.51	9107	1120	6	0	2	0	0	logfile
✔	8UFA	42188	2024-04-14	2023-10-04	2.86	3.10	3.12	3.1	0.004	0.68	0.0	0.05	9.39	0.01	2.262	1.20	0.00	1.9	98.0	0.0	0.89	0.62	0.74	4.33	3.1	0.002	0.53	0.0	0.04	13.89	0.00	2.182	6.53	2.16	2.2	97.8	0.0	0.88	1.21	0.61	0.81	3.55	31260	4024	20	0	8	0	0	logfile
✔	8UFH	42207	2024-04-06	2023-10-04	3.2	3.52	3.27	3.5	0.009	0.91	0.0	0.15	16.70	0.02	1.977	9.69	0.00	2.4	97.6	0.0	1.00	0.61	0.84	2.89	3.5	0.004	0.67	0.0	0.07	17.44	0.00	2.086	9.85	2.10	1.9	98.1	0.0	0.61	0.88	0.53	0.83	2.40	9128	1120	5	0	2	0	0	logfile

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