Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8UFC	42192	2024-04-15	2023-10-04	3.09	3.36	3.20	3.4	0.003	0.65	0.0	0.05	9.95	0.01	2.186	1.79	0.00	2.3	97.7	0.0	0.74	0.61	0.73	3.76	3.4	0.006	0.64	0.0	0.05	13.45	0.00	2.059	6.15	2.24	3.6	96.4	0.0	0.32	0.55	0.57	0.81	3.35	33624	4336	28	0	16	0	0	logfile
✔	8QQ0	18571	2024-04-05	2023-10-03	3.5	3.77	3.46	3.7	0.005	0.79	0.0	0.05	20.44	0.00	2.161	6.62	0.00	9.7	90.2	0.1	-3.12	0.75	0.86	4.12	3.7	0.003	0.64	0.0	0.04	14.83	0.00	2.236	5.26	4.42	7.6	92.4	0.0	-2.26	0.34	0.75	0.84	3.45	5677	715	9	0	14	0	0	logfile
✔	8WM8	37645	2024-04-09	2023-10-03	3.54	3.92	3.62	3.9	0.002	0.58	0.0	0.04	14.85	0.00	1.963	8.64	0.00	7.3	92.7	0.0	-2.51	0.59	0.76	1.77	3.9	0.003	0.59	0.0	0.04	16.06	0.00	1.898	9.84	0.89	7.7	92.2	0.1	-2.05	0.37	0.56	0.74	1.67	16776	1055	5	0	1	0	8522	logfile
✔	8QPR	18560	2024-04-05	2023-10-03	3.8	4.06	3.79	4.0	0.006	0.89	0.0	0.05	17.70	0.01	2.246	8.76	0.16	12.6	87.4	0.0	-3.38	0.74	0.84	3.62	4.0	0.004	0.73	0.0	0.05	14.59	0.00	2.264	8.23	3.95	9.6	90.4	0.0	-2.55	0.48	0.75	0.84	2.91	5787	723	9	0	15	0	0	logfile
✔	8UF7	42185	2024-04-05	2023-10-03	3.2	2.40	3.23	2.0	0.005	0.70	0.0	0.05	18.21	0.01	2.204	18.82	0.89	12.8	86.6	0.6	-2.23	0.68	0.67	1.77	2.1	0.005	0.72	0.0	0.04	18.48	0.01	2.183	20.12	8.05	13.6	85.8	0.6	-2.20	1.11	0.68	0.67	1.40	3927	514	3	0	0	0	0	logfile
✔	8UF0	42181	2024-04-12	2023-10-03	2.02	2.34	2.08	2.2	0.007	0.76	0.0	0.05	17.50	0.01	0.013	4.37	0.54	1.8	98.2	0.0	0.09	0.84	0.89	5.17	2.2	0.003	0.62	0.0	0.05	17.90	0.01	2.125	3.00	1.19	1.1	98.9	0.0	1.26	0.34	0.82	0.88	4.15	27000	3456	48	0	0	804	0	logfile
✔	8UEE	42161	2024-04-12	2023-10-01	3.2	3.40	3.22	3.5	0.005	0.63	0.0	0.05	14.50	0.00	1.893	6.69	0.43	2.7	97.3	0.0	0.29	0.64	0.81	2.25	3.5	0.005	0.63	0.0	0.05	15.90	0.00	1.836	6.13	1.55	3.4	96.6	0.0	0.30	1.15	0.64	0.82	1.90	25924	3285	19	0	21	1	0	logfile
✔	8WLo	37626	2024-04-15	2023-09-30	2.62	3.59	2.69	2.8	0.004	0.66	0.0	0.05	16.70	0.00	2.086	8.36	0.60	3.3	96.7	0.0	0.17	0.83	0.70	2.23	2.9	0.003	0.62	0.0	0.05	15.43	0.00	2.176	7.83	2.05	3.1	96.9	0.0	0.34	0.96	0.88	0.89	2.48	30464	3784	20	0	50	0	0	logfile
✔	8WLR	37629	2024-04-06	2023-09-30	3.12	3.43	3.11	3.3	0.003	0.53	0.0	0.04	16.12	0.00	2.266	4.86	0.14	1.9	98.1	0.0	0.16	0.70	0.88	3.10	3.3	0.003	0.51	0.0	0.04	16.13	0.00	2.279	3.59	2.02	2.0	98.0	0.0	0.92	0.35	0.73	0.90	2.88	6431	792	4	0	2	0	0	logfile
✔	8QoT	18541	2024-04-06	2023-09-29	3.2	2.66	3.11	2.2	0.004	0.62	0.0	0.04	12.78	0.00	2.219	6.66	0.00	3.7	96.3	0.0	0.08	0.79	0.77	3.11	3.0	0.003	0.65	0.0	0.04	15.09	0.00	2.217	8.88	2.30	3.8	96.2	0.0	0.91	1.15	0.79	0.81	2.98	7493	968	5	0	0	0	0	logfile
✔	8UDG	42149	2024-04-10	2023-09-28	4.98	6.27	5.10	5.0	0.004	0.65	0.0	0.04	11.43	0.00	2.089	3.07	0.00	2.8	97.1	0.2	-0.18	0.86	0.74	—	5.0	0.003	0.54	0.0	0.04	11.75	0.00	1.953	12.44	0.00	4.9	94.9	0.2	0.67	1.04	0.87	0.76	—	19524	1317	7	0	0	0	9627	logfile
✔	8QoE	18535	2024-04-09	2023-09-28	3.16	3.80	3.17	3.5	0.019	2.44	121.0	0.22	14.31	0.01	1.749	4.38	0.84	3.4	96.6	0.0	-2.30	0.75	0.78	2.78	3.6	0.002	0.53	0.0	0.04	15.34	0.00	2.100	3.76	0.52	3.0	97.0	0.0	1.45	0.70	0.73	0.80	1.87	17816	1136	2	0	0	0	9072	logfile
✔	8UCU	42140	2024-04-08	2023-09-27	2.85	3.74	2.84	3.1	0.009	0.49	0.0	0.04	18.73	0.00	1.905	2.84	0.00	3.1	96.9	0.0	1.77	0.88	0.84	3.01	3.2	0.003	0.49	0.0	0.04	18.32	0.00	1.886	3.11	0.64	2.4	97.6	0.0	2.19	3.19	0.87	0.84	2.73	14758	868	4	24	2	0	7290	logfile
✔	8UCW	42142	2024-04-09	2023-09-27	3.64	4.65	3.41	2.7	0.008	0.57	0.0	0.04	20.73	0.00	2.087	3.44	0.00	3.0	97.0	0.0	1.69	0.87	0.75	0.97	2.5	0.002	0.53	0.0	0.04	20.24	0.00	1.321	6.44	1.03	3.0	97.0	0.0	1.87	1.27	0.89	0.80	0.85	15967	868	5	61	4	0	7703	logfile
✔	8UCS	42139	2024-04-08	2023-09-27	2.4	2.51	2.38	2.5	0.003	0.49	0.0	0.04	18.16	0.00	2.235	8.78	0.36	3.0	97.0	0.0	0.55	0.66	0.81	2.59	2.5	0.004	0.60	0.0	0.04	18.47	0.00	2.126	9.80	3.78	4.1	95.9	0.0	1.92	0.30	0.69	0.86	2.10	12605	1632	12	0	0	2	0	logfile
✔	8UCV	42141	2024-04-10	2023-09-27	3.81	4.82	3.48	2.6	0.008	0.60	0.0	0.04	20.56	0.00	1.901	4.71	0.00	3.2	96.8	0.0	1.47	0.84	0.74	0.31	2.6	0.002	0.56	0.0	0.04	20.31	0.00	1.197	7.96	1.27	2.4	97.6	0.0	1.57	2.32	0.86	0.80	0.67	19076	1054	7	64	5	0	9226	logfile
✔	8UCD	42124	2024-04-06	2023-09-26	3.0	3.31	2.98	3.3	0.007	0.86	0.0	0.04	17.94	0.00	2.171	4.36	0.12	4.4	95.6	0.0	0.96	0.64	0.82	2.47	3.3	0.002	0.56	0.0	0.04	17.13	0.00	2.253	3.87	1.33	4.6	95.4	0.0	1.29	0.91	0.59	0.81	2.32	8058	939	8	0	9	1	0	logfile
✔	8UC0	42111	2024-04-06	2023-09-25	2.42	2.96	2.44	2.8	0.002	0.47	0.0	0.03	13.63	0.00	2.018	5.07	0.84	1.2	98.8	0.0	3.55	0.71	0.89	3.69	2.8	0.002	0.51	0.0	0.03	13.72	0.00	2.049	3.62	1.12	1.4	98.6	0.0	3.59	0.92	0.63	0.88	3.80	6861	422	2	0	3	102	3375	logfile
✔	8UBW	42107	2024-04-06	2023-09-25	2.59	3.18	2.61	3.0	0.002	0.48	0.0	0.03	14.62	0.00	2.236	3.93	0.85	1.4	98.6	0.0	3.39	0.70	0.88	3.80	3.0	0.002	0.47	0.0	0.03	14.36	0.00	2.068	4.08	1.13	2.6	97.4	0.0	3.95	0.66	0.61	0.86	2.72	6741	418	2	0	4	38	3343	logfile
✔	8QN7	18509	2024-04-05	2023-09-25	2.7	2.38	2.18	2.7	0.010	1.43	0.0	0.09	13.54	0.01	2.570	5.31	3.45	8.3	91.7	0.0	-3.22	0.45	0.93	6.45	2.7	0.003	0.50	0.0	0.05	18.63	0.00	2.616	2.48	0.00	6.7	93.3	0.0	-3.34	1.19	0.43	0.92	6.04	1455	190	5	0	0	0	0	logfile

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