Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8UBY	42109	2024-04-06	2023-09-25	2.67	3.13	2.68	3.0	0.002	0.47	0.0	0.03	14.53	0.01	2.118	4.08	0.56	1.7	98.3	0.0	3.72	0.67	0.88	4.26	3.0	0.003	0.50	0.0	0.03	14.73	0.00	2.034	5.09	0.85	1.9	98.1	0.0	3.92	0.89	0.60	0.86	3.02	6756	419	2	0	4	46	3345	logfile
✔	8UBZ	42110	2024-04-06	2023-09-25	3.02	3.57	3.02	3.5	0.002	0.48	0.0	0.03	15.41	0.01	2.043	4.55	0.28	1.5	98.5	0.0	3.77	0.64	0.82	2.95	3.5	0.003	0.52	0.0	0.03	15.22	0.00	2.034	8.67	2.85	1.7	98.3	0.0	3.25	0.76	0.60	0.83	2.12	6674	415	2	0	4	26	3315	logfile
✔	8QN7	18509	2024-04-05	2023-09-25	2.7	2.38	2.18	2.7	0.010	1.43	0.0	0.09	13.54	0.01	2.570	5.31	3.45	8.3	91.7	0.0	-3.22	0.45	0.93	6.45	2.7	0.003	0.50	0.0	0.05	18.63	0.00	2.616	2.48	0.00	6.7	93.3	0.0	-3.34	1.19	0.43	0.92	6.04	1455	190	5	0	0	0	0	logfile
✔	8QMo	18498	2024-04-12	2023-09-24	2.76	2.46	2.65	2.7	0.004	0.63	1.0	0.04	18.26	0.00	2.007	5.59	2.08	3.9	96.0	0.1	0.67	0.76	0.85	3.52	2.7	0.002	0.52	0.0	0.04	18.07	0.00	2.033	5.55	1.30	3.9	96.1	0.0	0.34	0.38	0.77	0.85	3.50	26936	1721	7	0	7	0	12884	logfile
✔	8Wi9	37561	2024-04-05	2023-09-24	3.5	3.88	3.05	3.4	0.003	0.56	0.0	0.03	23.55	0.00	1.955	10.62	0.43	4.2	95.8	0.0	0.56	0.86	0.86	1.71	3.4	0.005	0.60	0.0	0.04	23.18	0.00	1.961	10.44	4.66	4.6	95.4	0.0	0.69	1.11	0.86	0.87	1.88	54459	2779	24	1515	0	0	0	logfile
✔	8WiC	37563	2024-04-13	2023-09-24	3.5	3.74	2.90	3.4	0.006	0.65	0.0	0.04	24.41	0.01	2.008	9.14	0.81	2.8	97.2	0.0	-0.03	0.87	0.90	2.28	3.4	0.005	0.59	0.0	0.03	23.98	0.00	1.961	9.56	4.05	3.6	96.4	0.0	-0.02	1.16	0.87	0.90	2.21	91332	2888	29	3215	0	0	0	logfile
✔	8WiB	37562	2024-04-15	2023-09-24	3.5	3.78	2.98	3.4	0.005	0.63	0.0	0.04	24.19	0.01	1.044	9.82	0.87	3.1	96.9	0.0	0.28	0.89	0.88	1.77	3.5	0.004	0.62	1.0	0.03	23.74	0.00	1.642	10.35	3.81	3.9	96.1	0.0	0.37	1.55	0.90	0.89	2.19	142247	5213	50	4730	0	0	0	logfile
✔	8Wi8	37560	2024-04-13	2023-09-24	2.7	3.75	2.93	3.5	0.002	0.52	0.0	0.03	24.36	0.00	2.039	8.90	0.30	2.7	97.3	0.0	0.41	0.85	0.85	2.30	3.5	0.003	0.57	0.0	0.03	23.93	0.00	2.024	9.33	3.06	3.9	96.1	0.0	0.06	1.12	0.87	0.87	2.42	89877	2902	28	3143	0	0	0	logfile
✔	8UBR	42101	2024-04-07	2023-09-24	2.7	2.07	2.73	2.6	0.008	0.89	0.0	0.06	17.65	0.00	1.887	3.81	0.10	1.8	98.2	0.0	0.76	0.61	0.83	2.22	2.6	0.002	0.56	0.0	0.04	17.98	0.00	2.015	3.86	2.76	1.6	98.4	0.0	1.85	0.82	0.61	0.84	2.88	9440	1156	2	0	9	4	0	logfile
✔	8WHX	37551	2024-04-15	2023-09-23	2.8	3.14	2.84	2.8	0.004	0.60	0.0	0.04	24.29	0.00	2.082	9.83	4.39	4.0	96.0	0.0	0.27	0.89	0.89	2.63	2.8	0.003	0.60	0.0	0.04	23.95	0.00	1.955	9.68	4.50	3.8	96.2	0.0	0.30	1.10	0.89	0.90	2.69	142363	5441	50	4652	0	0	0	logfile
✔	8WHY	37552	2024-04-13	2023-09-23	2.7	3.11	2.73	2.8	0.004	0.58	0.0	0.04	24.51	0.00	2.033	8.76	4.64	3.8	96.1	0.0	0.15	0.85	0.90	3.30	2.8	0.005	0.61	0.0	0.04	24.09	0.00	2.039	8.44	4.64	3.9	96.1	0.0	0.16	0.18	0.86	0.91	3.39	89672	2900	28	3134	0	0	0	logfile
✔	8WGW	37517	2024-04-06	2023-09-22	2.9	3.23	3.07	3.2	0.004	0.59	0.0	0.04	19.74	0.00	2.167	9.11	0.14	4.4	95.6	0.0	-0.16	0.66	0.79	3.06	3.2	0.003	0.57	0.0	0.04	16.79	0.00	2.177	8.49	3.73	4.3	95.7	0.0	0.04	0.32	0.62	0.78	2.80	6564	794	5	0	9	0	0	logfile
✔	8WG7	37504	2024-04-06	2023-09-20	2.54	3.39	2.59	3.2	0.003	0.54	0.0	0.04	13.04	0.00	2.167	8.69	0.12	3.6	96.2	0.3	1.50	0.67	0.78	2.51	3.2	0.005	0.67	0.0	0.04	16.10	0.00	2.200	9.87	3.13	3.8	96.2	0.0	1.53	0.44	0.66	0.78	2.35	8123	1030	5	0	0	0	0	logfile
✔	8UAE	42061	2024-04-07	2023-09-20	3.25	2.38	3.36	2.1	0.004	0.54	0.0	0.13	15.78	0.00	1.383	2.81	0.01	4.4	95.6	0.0	-0.64	0.80	0.81	2.82	2.1	0.002	0.52	0.0	0.04	17.07	0.00	2.033	4.08	1.39	4.3	95.7	0.0	-0.33	1.21	0.79	0.80	2.49	64624	8033	35	0	22	0	0	logfile
✔	8UAF	42062	2024-04-07	2023-09-20	3.18	2.39	3.33	2.1	0.005	0.64	0.0	0.27	18.11	0.00	1.721	4.71	0.00	5.0	95.0	0.0	-0.70	0.75	0.74	2.16	2.1	0.003	0.67	3.0	0.04	16.88	0.00	1.711	6.85	1.96	5.6	94.4	0.0	-1.07	0.43	0.75	0.74	1.78	64015	8033	35	0	22	0	0	logfile
✔	8QLo	18486	2024-04-06	2023-09-20	2.57	3.41	2.60	3.2	0.009	1.18	1.0	0.08	15.29	0.01	2.209	14.78	2.16	4.5	95.4	0.1	-1.41	0.76	0.78	2.76	3.2	0.005	0.69	0.0	0.04	16.79	0.00	2.110	12.10	2.80	3.4	96.6	0.0	0.34	0.88	0.77	0.81	2.88	7282	892	2	0	0	0	0	logfile
✔	8WG8	37505	2024-04-06	2023-09-20	2.71	3.54	2.73	3.3	0.005	0.68	0.0	0.05	13.93	0.00	2.170	7.15	2.13	3.8	96.2	0.0	0.12	0.64	0.79	2.81	3.3	0.004	0.65	0.0	0.04	15.84	0.00	2.099	8.09	2.36	3.8	96.2	0.0	0.89	0.50	0.63	0.80	2.72	8043	1037	6	0	0	0	0	logfile
✔	8WG5	37503	2024-04-09	2023-09-20	3.05	3.73	3.03	3.0	0.003	0.59	0.0	0.04	26.06	0.00	2.099	12.21	0.32	2.6	97.4	0.0	1.36	0.83	0.71	0.29	3.0	0.004	0.66	0.0	0.04	26.82	0.00	2.082	13.16	2.42	2.8	97.2	0.0	1.67	1.57	0.91	0.87	1.41	14965	1135	12	294	0	0	0	logfile
✔	8WFi	37492	2024-04-05	2023-09-19	2.58	2.82	2.57	2.8	0.002	0.57	0.0	0.04	12.58	0.00	2.278	2.56	0.00	2.4	97.6	0.0	1.63	0.62	0.81	3.69	2.8	0.003	0.58	0.0	0.04	15.25	0.00	2.194	2.44	2.64	2.8	97.2	0.0	1.87	0.89	0.68	0.85	3.52	4347	543	3	0	3	37	0	logfile
✔	8WFK	37494	2024-04-05	2023-09-19	3.22	3.53	3.37	3.6	0.003	0.61	0.0	0.04	17.00	0.00	2.137	5.06	0.00	5.0	95.0	0.0	-1.97	0.54	0.85	2.36	3.6	0.003	0.55	0.0	0.04	17.09	0.00	2.185	4.95	1.52	5.4	94.6	0.0	-0.38	0.36	0.59	0.87	2.06	4371	546	2	0	4	0	0	logfile

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