Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8WFL	37495	2024-04-05	2023-09-19	3.03	3.10	3.19	3.5	0.008	0.73	0.0	0.05	17.26	0.00	2.223	11.05	0.21	6.8	93.2	0.0	-0.36	0.54	0.79	2.07	3.5	0.003	0.58	0.0	0.04	17.62	0.00	2.141	8.43	5.57	6.4	93.6	0.0	-0.24	0.28	0.53	0.79	2.31	4414	552	2	0	1	0	0	logfile
✔	8WFi	37492	2024-04-05	2023-09-19	2.58	2.82	2.57	2.8	0.002	0.57	0.0	0.04	12.58	0.00	2.278	2.56	0.00	2.4	97.6	0.0	1.63	0.62	0.81	3.69	2.8	0.003	0.58	0.0	0.04	15.25	0.00	2.194	2.44	2.64	2.8	97.2	0.0	1.87	0.89	0.68	0.85	3.52	4347	543	3	0	3	37	0	logfile
✔	8U8o	42026	2024-04-14	2023-09-18	2.4	2.72	2.39	2.3	0.006	0.78	0.0	0.05	18.03	0.00	2.256	3.62	1.24	3.4	96.6	0.0	0.12	0.82	0.79	4.19	2.3	0.004	0.68	0.0	0.04	16.74	0.00	2.121	5.95	1.12	3.1	96.9	0.0	1.07	1.40	0.88	0.91	3.41	30080	3856	16	0	32	0	0	logfile
✔	8U8Y	42029	2024-04-11	2023-09-18	2.1	2.25	2.12	2.3	0.007	0.74	0.0	0.05	17.23	0.01	2.328	2.24	1.76	2.6	97.4	0.0	0.39	0.74	0.86	5.43	2.3	0.002	0.47	0.0	0.04	17.03	0.00	2.310	3.01	1.80	2.5	97.5	0.0	1.00	0.19	0.72	0.86	5.42	22616	2936	16	0	16	0	0	logfile
✔	8WEJ	37477	2024-04-07	2023-09-18	2.79	2.58	2.84	3.0	0.007	0.91	0.0	0.05	14.70	0.01	1.991	3.56	2.33	3.6	96.4	0.0	-0.11	0.72	0.78	4.06	3.0	0.003	0.64	0.0	0.04	16.53	0.00	2.027	12.17	2.43	3.5	96.5	0.0	0.11	1.54	0.72	0.81	3.49	10659	1336	11	0	12	1	0	logfile
✔	8WEA	37476	2024-04-09	2023-09-17	3.2	3.43	3.24	3.5	0.009	1.29	2.0	0.11	19.61	0.01	1.927	29.12	5.51	9.4	88.9	1.7	-2.74	0.60	0.73	1.67	3.4	0.004	0.90	0.0	0.06	17.77	0.00	2.097	11.38	3.50	6.3	93.7	0.0	-0.58	1.08	0.65	0.82	2.31	17188	2154	9	0	19	0	0	logfile
✔	8WE9	37475	2024-04-10	2023-09-17	3.0	3.48	3.17	3.4	0.006	0.90	1.0	0.05	22.12	0.00	2.195	15.78	8.57	9.2	89.4	1.4	-2.16	0.57	0.78	2.03	3.4	0.005	0.74	0.0	0.04	19.06	0.00	2.060	10.94	4.46	8.2	91.7	0.2	-1.31	0.46	0.58	0.79	2.28	20730	2532	10	0	23	0	0	logfile
✔	8WE6	37472	2024-04-10	2023-09-17	2.9	3.27	3.16	3.3	0.005	0.86	0.0	0.04	21.75	0.01	2.174	11.81	6.34	8.4	91.1	0.5	-2.16	0.53	0.81	2.49	3.3	0.005	0.76	0.0	0.05	19.03	0.01	2.146	10.69	5.18	8.6	91.1	0.3	-1.52	0.37	0.55	0.83	2.41	20758	2532	10	0	24	0	0	logfile
✔	8WE8	37474	2024-04-11	2023-09-17	2.9	3.21	3.10	3.2	0.004	0.76	0.0	0.04	20.19	0.00	2.197	9.57	5.44	6.0	93.6	0.4	-1.07	0.57	0.82	2.08	3.2	0.003	0.64	0.0	0.04	18.28	0.00	2.189	9.01	3.53	5.9	93.9	0.3	-0.97	0.33	0.55	0.81	2.05	21309	2593	12	0	26	0	0	logfile
✔	8WE7	37473	2024-04-11	2023-09-17	3.2	3.60	3.49	3.6	0.004	0.75	1.0	0.04	18.92	0.01	2.198	12.87	0.74	9.9	89.1	1.0	-2.42	0.53	0.76	2.05	3.6	0.003	0.67	0.0	0.04	17.80	0.00	2.188	10.21	3.45	9.8	89.7	0.5	-1.64	0.41	0.57	0.80	1.80	21014	2583	11	0	20	0	0	logfile
✔	8U8F	42023	2024-04-08	2023-09-17	3.49	3.84	3.55	3.9	0.003	0.54	0.0	0.04	15.46	0.01	2.124	7.60	0.13	2.5	97.4	0.1	1.41	0.59	0.68	1.19	3.9	0.002	0.54	0.0	0.04	16.14	0.00	2.058	10.40	2.15	3.3	96.7	0.0	0.77	0.44	0.59	0.73	1.43	13891	889	5	0	1	0	6925	logfile
✔	8U8B	42020	2024-04-12	2023-09-16	3.7	4.26	3.89	4.0	0.004	0.77	0.0	0.05	13.63	0.00	2.238	4.96	0.62	7.3	92.7	0.0	-2.19	0.73	0.63	1.05	4.0	0.003	0.65	0.0	0.04	14.85	0.00	2.116	8.97	1.75	5.3	94.7	0.0	-0.34	0.70	0.82	0.77	0.89	24694	3424	6	2	2	0	0	logfile
✔	8U89	42018	2024-04-07	2023-09-16	3.3	3.66	3.52	3.7	0.003	0.70	0.0	0.04	16.18	0.01	2.091	8.51	0.54	2.4	97.6	0.0	0.98	0.67	0.79	1.47	3.7	0.004	0.87	0.0	0.04	16.92	0.00	2.078	10.17	2.54	2.4	97.6	0.0	1.48	1.15	0.68	0.80	1.50	9928	1241	4	0	2	0	0	logfile
✔	8WDV	37466	2024-04-12	2023-09-16	2.24	2.37	2.20	2.3	0.019	1.86	0.0	0.06	22.60	0.02	1.372	11.84	1.77	1.8	98.2	0.0	2.38	0.79	0.89	5.99	2.3	0.004	0.67	0.0	0.04	17.07	0.00	1.822	9.56	2.00	1.9	98.1	0.0	2.63	0.89	0.79	0.91	5.03	26261	2585	98	0	111	354	0	logfile
✔	8WDU	37465	2024-04-12	2023-09-16	2.24	1.99	2.27	2.2	0.019	1.89	0.0	0.06	24.81	0.02	1.765	13.88	1.73	1.7	98.3	0.0	2.02	0.62	0.83	5.33	2.2	0.007	0.96	0.0	0.05	20.08	0.01	1.978	12.89	2.85	2.3	97.7	0.0	1.57	0.29	0.71	0.89	5.35	26274	2575	98	0	113	334	0	logfile
✔	8U7i	41983	2024-04-16	2023-09-15	2.57	3.46	2.74	3.1	0.004	0.62	0.0	0.04	17.45	0.00	2.101	10.01	3.23	2.9	97.1	0.1	0.66	0.79	0.88	2.83	3.1	0.003	0.64	0.0	0.04	17.49	0.00	2.137	10.28	2.79	2.8	97.1	0.1	1.31	0.35	0.79	0.87	2.64	38864	4760	16	0	0	0	0	logfile
✔	8QKK	18464	2024-04-05	2023-09-15	3.23	3.44	3.28	3.6	0.002	0.49	0.0	0.04	14.14	0.00	2.132	9.00	0.00	2.9	97.1	0.0	2.28	0.62	0.79	1.22	3.6	0.005	1.15	1.0	0.05	15.88	0.00	2.253	10.33	1.85	2.3	97.7	0.0	1.66	0.79	0.64	0.80	1.36	5581	730	1	0	0	0	0	logfile
✔	8U84	42008	2024-04-16	2023-09-15	3.88	4.89	3.87	2.9	0.004	0.84	0.0	0.05	16.82	0.01	2.125	14.34	0.62	5.2	94.5	0.3	-0.92	0.90	0.75	0.16	2.8	0.004	0.75	0.0	0.04	17.42	0.00	2.069	25.04	2.83	6.2	93.8	0.1	-0.54	1.21	0.90	0.78	0.04	37885	4770	20	0	0	0	0	logfile
✔	8U7Q	41989	2024-04-14	2023-09-15	3.3	3.62	3.26	3.6	0.006	1.09	0.0	0.06	20.74	0.00	2.325	6.75	0.73	3.3	96.5	0.2	-0.67	0.79	0.83	2.15	3.6	0.002	0.58	0.0	0.04	18.05	0.00	2.138	6.88	4.08	2.9	96.9	0.2	0.21	0.52	0.80	0.86	2.06	30520	3872	16	0	40	0	0	logfile
✔	8U7V	42012	2024-04-13	2023-09-15	3.3	3.67	3.36	3.7	0.007	1.18	0.0	0.09	20.78	0.00	2.127	7.94	0.85	3.3	96.5	0.2	-0.95	0.64	0.83	2.41	3.7	0.004	0.63	0.0	0.04	18.87	0.00	2.141	5.84	2.77	3.5	96.3	0.2	-0.36	0.51	0.65	0.86	2.63	29680	3768	16	0	40	0	0	logfile

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