Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8U7M	41986	2024-04-13	2023-09-15	3.1	3.40	3.15	3.4	0.007	1.13	0.0	0.09	20.22	0.01	2.203	10.32	0.27	3.8	96.2	0.0	-1.11	0.68	0.69	2.25	3.4	0.003	0.67	0.0	0.04	18.42	0.00	2.121	11.19	3.21	4.5	95.5	0.0	-0.99	0.58	0.69	0.72	1.82	28336	3608	16	0	40	0	0	logfile
✔	8U84	42008	2024-04-16	2023-09-15	3.88	4.89	3.87	2.9	0.004	0.84	0.0	0.05	16.82	0.01	2.125	14.34	0.62	5.2	94.5	0.3	-0.92	0.90	0.75	0.16	2.8	0.004	0.75	0.0	0.04	17.42	0.00	2.069	25.04	2.83	6.2	93.8	0.1	-0.54	1.21	0.90	0.78	0.04	37885	4770	20	0	0	0	0	logfile
✔	8QK3	18455	2024-04-06	2023-09-14	3.2	4.00	3.10	3.4	0.003	0.60	0.0	0.04	12.49	0.00	1.913	6.28	0.12	3.1	96.9	0.0	-0.49	0.87	0.81	3.51	3.4	0.006	0.76	0.0	0.04	14.56	0.00	2.049	17.02	3.18	4.9	95.1	0.0	-0.45	0.93	0.87	0.87	3.00	7535	955	5	0	0	0	0	logfile
✔	8WD8	37457	2024-04-08	2023-09-14	2.9	3.05	2.88	3.1	0.004	0.70	0.0	0.05	19.79	0.01	1.852	3.54	0.65	3.5	96.5	0.0	-1.91	0.77	0.89	2.83	3.1	0.004	0.56	0.0	0.04	20.03	0.00	1.920	5.31	2.89	2.7	97.3	0.0	0.69	0.94	0.70	0.89	3.33	13667	1500	9	64	7	0	0	logfile
✔	8QJX	18453	2024-04-06	2023-09-14	3.3	3.68	3.02	3.3	0.005	0.59	0.0	0.05	13.62	0.00	1.871	5.41	0.00	3.7	96.3	0.0	-0.83	0.88	0.87	4.13	3.3	0.003	0.62	0.0	0.04	15.00	0.00	2.066	8.57	2.47	3.8	96.2	0.0	-0.40	0.79	0.88	0.88	3.40	7868	997	5	0	0	0	0	logfile
✔	8WD6	37455	2024-04-06	2023-09-14	2.87	3.11	2.89	3.2	0.003	0.56	1.0	0.04	16.49	0.00	2.431	5.56	0.12	2.7	97.3	0.0	1.60	0.57	0.77	1.54	3.2	0.004	0.65	0.0	0.04	17.54	0.00	2.100	6.18	3.35	4.1	95.9	0.0	1.22	1.19	0.57	0.79	1.64	7973	1025	2	0	0	0	0	logfile
✔	8QJY	18454	2024-04-05	2023-09-14	3.5	4.18	3.43	3.7	0.003	0.61	0.0	0.05	13.67	0.00	1.682	8.80	0.14	2.7	97.3	0.0	-0.59	0.85	0.80	3.37	3.9	0.004	0.73	0.0	0.04	15.63	0.00	2.092	15.25	3.66	3.4	96.6	0.0	-0.51	1.62	0.86	0.84	2.78	6287	798	4	0	0	0	0	logfile
✔	8U5Y	41939	2024-04-15	2023-09-13	3.01	3.34	—	3.2	0.003	0.57	0.0	0.04	14.42	0.00	2.027	5.30	0.57	4.0	96.0	0.0	-1.43	0.86	0.83	3.28	3.2	0.003	0.53	0.0	0.04	14.83	0.00	1.969	6.40	0.78	5.1	94.9	0.0	-1.25	0.50	0.86	0.83	3.40	34491	2089	4	16	0	0	17152	logfile
✔	8U66	41946	2024-04-13	2023-09-13	2.21	2.31	2.31	2.3	0.004	0.56	0.0	0.09	16.75	0.00	1.869	2.66	0.28	3.4	96.6	0.0	2.01	0.71	0.83	4.97	2.3	0.002	0.54	0.0	0.04	17.14	0.00	1.939	5.62	2.01	3.2	96.8	0.0	1.41	0.26	0.77	0.87	5.06	29365	3584	24	0	16	981	0	logfile
✔	8QJJ	18448	2024-04-06	2023-09-13	3.35	3.35	3.18	3.3	0.012	1.98	0.0	0.10	12.60	0.01	2.538	0.43	0.00	2.3	97.7	0.0	-2.06	0.33	0.77	5.23	3.3	0.003	0.60	0.0	0.05	15.79	0.00	2.195	6.55	2.02	4.6	95.4	0.0	-1.98	2.31	0.33	0.79	4.17	7032	450	6	0	0	0	3588	logfile
✔	8WCN	37444	2024-04-05	2023-09-13	3.2	2.54	2.95	3.1	0.004	0.72	0.0	0.04	16.65	0.00	1.902	13.05	0.50	2.7	97.3	0.0	0.54	0.72	0.71	1.25	3.0	0.003	0.66	0.0	0.04	17.07	0.00	1.886	10.10	4.83	3.2	96.8	0.0	1.19	0.55	0.77	0.74	1.39	6086	757	4	0	6	0	0	logfile
✔	8WCB	37437	2024-04-06	2023-09-11	3.1	3.38	3.17	3.4	0.019	1.20	4.0	0.07	12.91	0.01	2.246	9.90	1.09	3.2	96.8	0.0	-0.88	0.59	0.67	3.20	3.4	0.004	0.61	0.0	0.04	14.38	0.00	2.083	13.74	2.59	3.8	96.2	0.0	-0.09	1.04	0.55	0.71	2.75	7784	1072	6	0	1	0	0	logfile
✔	8WCC	37438	2024-04-05	2023-09-11	3.04	2.88	1.90	3.2	0.017	2.05	5.0	0.15	16.41	0.02	2.464	8.33	2.87	9.2	90.8	0.0	-3.38	0.84	0.81	2.50	3.3	0.003	0.66	0.0	0.04	16.60	0.01	2.251	6.37	4.31	2.7	97.3	0.0	1.95	1.15	0.81	0.77	1.90	2056	270	2	0	1	0	0	logfile
✔	8U4S	41893	2024-04-10	2023-09-11	3.35	3.78	3.50	3.7	0.006	0.91	0.0	0.06	14.90	0.01	2.201	7.10	0.67	2.9	97.1	0.0	0.41	0.66	0.83	2.61	3.8	0.003	0.61	0.0	0.04	15.72	0.00	2.246	9.25	3.62	3.6	96.4	0.0	0.51	0.39	0.62	0.84	2.36	12684	1557	12	0	9	0	0	logfile
✔	8WC4	37430	2024-04-06	2023-09-11	3.1	3.34	3.05	3.3	0.006	0.81	2.0	0.06	12.94	0.01	2.216	7.71	0.93	4.4	95.6	0.0	-0.26	0.69	0.85	3.75	3.3	0.003	0.56	0.0	0.04	15.00	0.00	2.198	4.77	1.63	3.0	97.0	0.0	0.61	0.93	0.72	0.88	2.89	8394	1110	6	0	1	0	0	logfile
✔	8WC6	37432	2024-04-07	2023-09-11	3.2	3.26	3.10	3.3	0.008	0.99	2.0	0.07	13.34	0.01	2.130	8.47	1.10	5.1	94.9	0.0	-0.22	0.72	0.84	3.41	3.3	0.004	0.58	0.0	0.04	14.94	0.00	2.248	4.46	1.21	4.8	95.2	0.0	0.20	0.96	0.72	0.87	2.97	9183	1241	7	0	1	0	0	logfile
✔	8WC5	37431	2024-04-06	2023-09-11	3.3	2.84	2.93	3.0	0.006	1.09	3.0	0.08	14.80	0.01	2.206	10.49	1.80	6.6	93.4	0.0	-2.33	0.60	0.68	2.61	2.9	0.004	0.67	0.0	0.05	16.19	0.00	2.154	6.96	2.24	6.6	93.4	0.0	-1.02	1.29	0.62	0.72	2.09	8511	1111	6	0	1	0	0	logfile
✔	8U4P	41890	2024-04-06	2023-09-11	3.15	3.53	3.25	3.5	0.004	0.62	0.0	0.04	17.04	0.00	2.240	4.24	0.00	3.3	96.7	0.0	0.52	0.63	0.84	3.05	3.5	0.002	0.44	0.0	0.04	16.20	0.00	2.227	3.96	1.89	2.9	97.1	0.0	1.26	0.24	0.57	0.83	2.59	7006	892	5	0	2	0	0	logfile
✔	8WC8	37434	2024-04-06	2023-09-11	2.9	3.26	2.95	3.2	0.013	0.85	5.0	0.06	12.50	0.01	2.252	9.20	0.26	2.5	97.5	0.0	1.02	0.66	0.81	3.77	3.2	0.005	0.62	0.0	0.04	15.66	0.00	2.085	10.56	2.87	3.4	96.6	0.0	0.71	0.90	0.59	0.82	3.38	8062	1101	6	0	1	0	0	logfile
✔	8Qi7	18436	2024-04-08	2023-09-11	2.9	3.13	2.98	3.2	0.007	0.60	0.0	0.04	9.92	0.00	2.275	2.18	0.79	6.3	93.4	0.2	-3.83	0.69	0.88	5.75	3.2	0.002	0.58	0.0	0.04	13.61	0.00	2.152	2.18	0.20	3.3	96.7	0.0	0.57	0.36	0.69	0.87	4.06	14609	1848	8	0	0	117	0	logfile

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