Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8WC5	37431	2024-04-06	2023-09-11	3.3	2.84	2.93	3.0	0.006	1.09	3.0	0.08	14.80	0.01	2.206	10.49	1.80	6.6	93.4	0.0	-2.33	0.60	0.68	2.61	2.9	0.004	0.67	0.0	0.05	16.19	0.00	2.154	6.96	2.24	6.6	93.4	0.0	-1.02	1.29	0.62	0.72	2.09	8511	1111	6	0	1	0	0	logfile
✔	8WC9	37435	2024-04-06	2023-09-11	3.2	3.47	3.29	3.5	0.007	0.91	3.0	0.06	13.76	0.01	2.205	9.72	1.16	5.5	94.5	0.0	-0.70	0.65	0.83	3.84	3.5	0.002	0.54	0.0	0.04	15.32	0.00	2.149	6.54	0.93	3.2	96.8	0.0	0.00	0.95	0.62	0.83	2.46	8394	1107	6	0	1	0	0	logfile
✔	8U4T	41894	2024-04-12	2023-09-11	3.38	3.74	3.44	3.7	0.007	0.96	0.0	0.07	13.85	0.01	2.200	8.61	0.00	4.2	95.8	0.0	0.47	0.65	0.84	2.65	3.7	0.004	0.61	0.0	0.04	14.70	0.00	2.145	6.77	3.57	3.5	96.5	0.0	0.47	0.42	0.66	0.87	2.58	16968	2056	16	0	20	0	0	logfile
✔	8Qi7	18436	2024-04-08	2023-09-11	2.9	3.13	2.98	3.2	0.007	0.60	0.0	0.04	9.92	0.00	2.275	2.18	0.79	6.3	93.4	0.2	-3.83	0.69	0.88	5.75	3.2	0.002	0.58	0.0	0.04	13.61	0.00	2.152	2.18	0.20	3.3	96.7	0.0	0.57	0.36	0.69	0.87	4.06	14609	1848	8	0	0	117	0	logfile
✔	8WCA	37436	2024-04-06	2023-09-11	3.48	3.71	3.50	3.7	0.006	0.87	5.0	0.06	13.52	0.01	2.105	10.04	0.89	4.3	95.7	0.0	-0.41	0.66	0.74	1.96	3.7	0.004	0.61	0.0	0.04	15.00	0.00	2.072	8.64	2.67	4.1	95.9	0.0	0.17	0.36	0.68	0.79	1.22	8160	1110	6	0	1	0	0	logfile
✔	8U4B	41877	2024-04-12	2023-09-10	3.9	4.27	3.89	4.0	0.003	0.59	0.0	0.04	16.02	0.00	2.146	10.97	0.07	7.0	92.9	0.1	-0.95	0.87	0.82	2.05	4.0	0.002	0.60	0.0	0.04	16.27	0.00	2.173	10.59	1.75	6.4	93.5	0.1	-0.75	0.32	0.88	0.84	1.92	13212	1634	2	0	0	0	0	logfile
✔	8U4C	41878	2024-04-10	2023-09-10	3.6	4.15	3.69	3.7	0.003	0.61	0.0	0.04	17.06	0.00	1.722	13.82	0.00	6.8	93.0	0.2	-1.32	0.87	0.82	2.06	3.7	0.004	0.62	0.0	0.04	17.16	0.00	2.187	15.61	3.69	7.7	92.0	0.2	-1.54	1.15	0.88	0.84	1.86	14706	1826	6	0	0	0	0	logfile
✔	8U4i	41883	2024-04-11	2023-09-10	3.38	3.92	3.46	3.8	0.014	1.56	0.0	0.09	16.96	0.01	2.351	0.62	0.35	2.0	98.0	0.0	-0.39	0.80	0.79	3.08	3.8	0.004	0.88	0.0	0.04	12.16	0.00	2.072	6.85	1.47	5.5	94.5	0.0	-1.43	1.22	0.75	0.75	2.77	20434	1301	20	0	57	0	9593	logfile
✔	8WBX	37426	2024-04-06	2023-09-10	3.23	3.53	3.23	3.5	0.003	0.66	0.0	0.04	16.96	0.00	2.305	10.08	0.38	1.6	98.4	0.0	1.77	0.48	0.63	1.04	3.5	0.003	0.61	0.0	0.04	16.34	0.00	2.228	11.56	5.16	2.7	97.3	0.0	1.44	0.55	0.50	0.66	1.19	7331	934	3	0	1	0	0	logfile
✔	8U4L	41886	2024-04-10	2023-09-10	3.31	3.91	3.35	3.7	0.013	1.52	2.0	0.09	15.71	0.01	2.364	1.08	0.09	2.0	98.0	0.0	-0.38	0.84	0.83	3.21	3.7	0.003	0.59	0.0	0.04	12.30	0.00	2.030	5.19	1.21	3.6	96.4	0.0	-0.57	1.21	0.81	0.83	3.29	19069	1230	15	0	35	0	9080	logfile
✔	8U4K	41885	2024-04-10	2023-09-10	4.27	4.73	4.32	4.3	0.013	1.64	1.0	0.09	16.02	0.02	2.383	1.03	0.19	3.8	96.2	0.0	-0.65	0.87	0.72	—	4.4	0.004	0.72	0.0	0.04	11.84	0.00	1.961	14.50	0.19	8.3	91.7	0.0	-1.79	3.58	0.87	0.76	—	19063	1228	15	0	35	0	9074	logfile
✔	8U4J	41884	2024-04-11	2023-09-10	3.7	4.14	3.77	4.0	0.014	1.54	3.0	0.09	16.95	0.01	2.219	0.90	0.17	2.3	97.7	0.0	-0.45	0.82	0.79	2.05	4.0	0.004	0.63	0.0	0.04	12.37	0.00	1.961	7.65	1.39	5.2	94.8	0.0	-1.22	1.49	0.82	0.78	2.42	20432	1297	20	0	58	0	9582	logfile
✔	8U4E	41880	2024-04-09	2023-09-10	4.2	4.74	4.27	3.9	0.003	0.65	0.0	0.05	13.41	0.00	1.274	21.10	0.00	9.6	90.3	0.2	-1.68	0.87	0.83	—	4.0	0.009	0.92	0.0	0.05	13.85	0.01	2.044	36.31	0.06	12.5	87.3	0.2	-2.15	0.41	0.87	0.84	—	13948	1729	5	0	0	0	0	logfile
✔	8WBA	37418	2024-04-06	2023-09-09	3.1	3.27	3.07	3.3	0.002	0.54	0.0	0.04	16.65	0.00	2.289	9.38	0.32	1.6	98.4	0.0	1.56	0.62	0.79	2.30	3.3	0.003	0.57	0.0	0.04	16.90	0.00	2.177	9.61	4.38	2.4	97.6	0.0	1.68	0.25	0.62	0.81	2.12	8646	1106	3	0	2	0	0	logfile
✔	8QHP	18415	2024-04-06	2023-09-08	2.8	3.49	2.82	3.3	0.002	0.38	0.0	0.04	11.64	0.00	2.176	6.09	0.00	1.0	99.0	0.0	1.77	0.76	0.86	4.14	3.3	0.002	0.46	0.0	0.04	14.74	0.00	2.182	7.06	0.98	1.2	98.8	0.0	2.54	0.85	0.74	0.84	3.33	6788	820	4	0	2	0	0	logfile
✔	8WB0	37411	2024-04-15	2023-09-08	2.94	3.19	3.00	3.2	0.007	0.73	0.0	0.05	15.57	0.00	1.845	10.47	1.17	4.0	95.8	0.2	0.50	0.58	0.56	2.46	3.1	0.003	0.52	0.0	0.04	18.17	0.00	1.852	32.13	3.69	4.8	95.0	0.2	0.67	1.55	0.80	0.85	2.28	35751	4182	24	110	10	0	23	logfile
✔	8WAX	37408	2024-04-15	2023-09-08	2.75	3.13	2.90	3.1	0.008	0.78	0.0	0.05	15.32	0.00	1.838	10.51	1.25	4.0	95.8	0.2	0.46	0.55	0.56	2.34	3.1	0.008	0.68	0.0	0.05	18.05	0.00	1.744	28.18	4.04	5.5	94.2	0.2	0.26	1.53	0.68	0.79	2.72	35751	4182	24	110	10	0	23	logfile
✔	8WAW	37407	2024-04-15	2023-09-08	3.02	3.29	3.17	3.3	0.005	0.71	0.0	0.05	15.44	0.00	1.829	10.58	1.25	4.0	95.8	0.2	0.50	0.60	0.58	2.12	3.2	0.008	0.67	0.0	0.04	17.62	0.00	1.718	31.03	3.09	6.0	93.9	0.1	0.35	0.78	0.82	0.87	2.18	35761	4182	24	109	11	0	23	logfile
✔	8WAU	37405	2024-04-15	2023-09-08	2.78	3.17	2.87	3.2	0.008	0.81	0.0	0.05	15.38	0.00	1.850	10.31	1.38	3.9	95.9	0.2	0.44	0.52	0.55	2.36	3.1	0.005	0.56	0.0	0.04	17.90	0.00	1.791	27.87	3.25	5.3	94.5	0.2	0.63	1.53	0.74	0.84	2.40	35721	4182	25	107	11	0	23	logfile
✔	8WAV	37406	2024-04-15	2023-09-08	2.72	3.14	2.84	3.1	0.011	0.89	0.0	0.05	15.49	0.01	1.832	10.05	1.33	3.9	95.9	0.2	0.34	0.54	0.56	2.38	3.1	0.003	0.51	0.0	0.04	17.96	0.00	1.842	28.83	2.63	4.4	95.4	0.2	0.82	1.56	0.66	0.78	2.44	35741	4182	24	108	11	0	23	logfile

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