Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8WAZ	37410	2024-04-15	2023-09-08	2.76	3.13	2.92	3.1	0.007	0.75	0.0	0.05	15.38	0.00	1.811	10.30	1.25	4.0	95.8	0.2	0.39	0.55	0.57	2.22	3.1	0.004	0.54	0.0	0.04	18.08	0.00	1.736	29.35	3.39	4.5	95.3	0.2	0.77	0.77	0.68	0.79	2.55	35753	4182	24	110	10	0	23	logfile
✔	8WAY	37409	2024-04-15	2023-09-08	2.85	3.17	2.99	3.2	0.008	0.78	0.0	0.05	15.37	0.00	1.799	10.65	1.17	3.9	95.9	0.2	0.47	0.58	0.57	2.10	3.1	0.005	0.55	0.0	0.04	18.31	0.00	1.802	32.37	3.09	5.4	94.4	0.2	0.76	1.57	0.75	0.83	2.49	35753	4182	24	110	10	0	23	logfile
✔	8WAX	37408	2024-04-15	2023-09-08	2.75	3.13	2.90	3.1	0.008	0.78	0.0	0.05	15.32	0.00	1.838	10.51	1.25	4.0	95.8	0.2	0.46	0.55	0.56	2.34	3.1	0.008	0.68	0.0	0.05	18.05	0.00	1.744	28.18	4.04	5.5	94.2	0.2	0.26	1.53	0.68	0.79	2.72	35751	4182	24	110	10	0	23	logfile
✔	8QHD	18408	2024-04-14	2023-09-07	3.6	3.56	—	3.3	0.004	0.60	2.0	0.04	15.70	0.01	2.212	11.78	0.50	4.3	95.6	0.0	0.70	0.78	0.65	1.59	3.3	0.003	0.61	0.0	0.04	16.37	0.00	2.162	11.15	1.99	4.1	95.9	0.0	0.90	1.99	0.80	0.69	1.40	95348	11804	6	0	0	0	0	logfile
✔	8WA5	37391	2024-04-10	2023-09-07	2.51	2.71	2.50	2.7	0.004	1.10	0.0	0.04	16.21	0.01	1.926	4.94	0.85	2.3	97.7	0.0	1.17	0.66	0.84	3.96	2.8	0.003	0.78	0.0	0.04	16.61	0.00	2.024	5.09	2.63	2.7	97.3	0.0	1.11	1.21	0.69	0.88	3.99	9929	1249	5	0	12	6	0	logfile
✔	8U3B	41856	2024-04-15	2023-09-07	3.23	3.78	3.32	3.6	0.011	0.96	0.0	0.05	16.99	0.01	1.992	10.95	0.00	5.3	94.5	0.1	-0.98	0.86	0.89	2.37	3.6	0.006	0.65	0.0	0.04	17.88	0.00	1.995	8.03	1.15	5.2	94.7	0.0	0.27	1.32	0.85	0.90	1.94	33286	3858	12	140	4	0	0	logfile
✔	8WAM	37397	2024-04-06	2023-09-07	3.23	3.48	3.24	3.5	0.002	0.45	0.0	0.04	17.90	0.00	2.211	5.64	0.11	1.7	98.3	0.0	1.70	0.60	0.77	1.11	3.5	0.002	0.52	0.0	0.04	17.76	0.00	2.029	5.99	2.25	2.2	97.8	0.0	1.17	0.40	0.59	0.78	1.15	8650	1102	4	0	4	0	0	logfile
✔	8QHC	18407	2024-04-08	2023-09-07	3.1	3.05	2.90	2.9	0.006	0.65	0.0	0.04	19.59	0.02	1.929	10.07	0.00	3.2	96.7	0.1	1.43	0.82	0.85	2.76	2.9	0.003	0.72	0.0	0.04	19.62	0.01	1.930	9.31	2.63	3.2	96.8	0.0	1.54	0.28	0.79	0.78	2.79	14829	1764	5	61	2	0	0	logfile
✔	8WA1	37388	2024-04-07	2023-09-06	2.8	3.82	2.97	2.9	0.005	0.72	8.0	0.05	11.75	0.00	1.793	6.08	5.25	2.2	97.8	0.0	-1.06	0.85	0.85	2.65	2.9	0.003	0.60	0.0	0.04	13.62	0.00	1.926	8.11	1.63	3.3	96.7	0.0	0.90	0.71	0.87	0.89	2.70	62699	8351	27	27	4	0	0	logfile
✔	8W9W	37383	2024-04-08	2023-09-06	3.74	3.98	3.75	4.0	0.007	0.96	1.0	0.05	18.62	0.01	1.975	12.31	1.11	10.1	89.8	0.2	0.01	0.58	0.74	1.04	4.0	0.003	0.68	0.0	0.04	18.29	0.00	2.116	10.79	4.01	8.8	91.1	0.1	0.13	1.31	0.59	0.76	1.02	13382	1584	12	0	10	0	0	logfile
✔	8QH3	18397	2024-04-07	2023-09-06	2.81	2.85	2.77	2.8	0.003	0.55	0.0	0.04	17.22	0.01	2.038	7.58	2.16	2.5	97.5	0.0	0.67	0.75	0.81	2.71	2.8	0.003	0.51	0.0	0.04	17.69	0.00	2.038	8.61	3.02	2.5	97.5	0.1	1.27	0.42	0.77	0.85	3.61	10796	1310	3	11	1	0	0	logfile
✔	8W9Y	37385	2024-04-08	2023-09-06	3.5	3.75	3.53	3.8	0.004	0.76	1.0	0.04	15.90	0.01	2.097	9.48	0.48	10.7	89.3	0.0	-0.43	0.58	0.75	1.32	3.7	0.003	0.67	0.0	0.04	16.80	0.00	2.040	8.95	4.08	10.5	89.5	0.0	0.00	0.65	0.60	0.78	1.14	13152	1584	6	0	0	0	0	logfile
✔	8W9Z	37386	2024-04-07	2023-09-06	3.0	3.89	3.12	3.3	0.005	0.72	2.0	0.06	9.63	0.00	1.688	5.63	1.71	3.4	96.6	0.0	-1.97	0.84	0.80	2.61	3.3	0.004	0.63	0.0	0.04	12.62	0.00	1.946	8.48	1.93	4.5	95.5	0.0	0.32	1.25	0.86	0.84	2.46	60525	8235	24	0	4	0	0	logfile
✔	8WA3	37390	2024-04-06	2023-09-06	2.86	3.76	2.88	3.5	0.003	0.65	0.0	0.04	14.06	0.00	2.090	9.53	1.03	5.1	94.9	0.0	0.71	0.65	0.80	1.97	3.5	0.004	0.74	0.0	0.05	16.66	0.00	2.116	11.13	2.28	5.8	94.2	0.0	0.56	1.61	0.64	0.79	1.98	8163	1031	5	0	0	0	0	logfile
✔	8WA0	37387	2024-04-07	2023-09-06	2.7	3.55	2.95	3.1	0.015	1.73	88.0	0.15	13.64	0.01	1.455	4.86	5.39	2.7	97.3	0.0	0.57	0.82	0.84	3.04	3.1	0.002	0.60	0.0	0.04	14.97	0.00	2.030	6.69	1.79	2.9	97.1	0.0	0.89	1.07	0.83	0.87	2.83	61128	8354	26	19	4	0	0	logfile
✔	8QGY	18396	2024-04-14	2023-09-06	3.71	3.99	3.79	3.8	0.003	0.62	1.0	0.06	11.94	0.00	2.061	4.68	3.91	6.2	93.8	0.1	0.12	0.75	0.64	0.79	3.8	0.003	0.57	0.0	0.06	14.28	0.00	1.938	11.99	2.78	7.4	92.6	0.1	0.16	0.80	0.77	0.68	0.66	25443	1589	2	0	0	0	12699	logfile
✔	8W9T	37381	2024-04-06	2023-09-05	2.6	2.34	2.82	2.7	0.005	0.60	0.0	0.04	12.30	0.00	2.090	8.43	0.00	1.7	98.1	0.2	-1.88	0.54	0.80	3.36	2.7	0.002	0.52	0.0	0.04	14.71	0.00	2.119	6.42	1.87	1.7	98.3	0.0	2.58	0.41	0.54	0.80	3.50	6574	852	6	0	2	4	0	logfile
✔	8QGU	18391	2024-04-14	2023-09-05	3.03	3.28	—	3.2	0.002	0.50	0.0	0.04	13.81	0.00	2.105	7.85	0.00	3.3	96.7	0.0	1.19	0.79	0.76	2.37	3.2	0.003	0.61	0.0	0.04	15.69	0.00	2.125	10.21	1.71	3.1	96.9	0.0	1.10	1.60	0.81	0.81	2.45	32838	4064	2	0	0	0	0	logfile
✔	8U2C	41845	2024-04-09	2023-09-05	2.5	2.75	2.49	2.9	0.012	1.88	5.0	0.10	13.83	0.02	2.543	0.27	1.85	4.1	95.6	0.3	-1.26	0.75	0.80	3.98	2.9	0.003	0.72	0.0	0.04	16.40	0.00	2.185	8.18	2.69	3.5	96.4	0.1	0.82	1.27	0.75	0.83	2.38	15042	1948	10	0	0	0	0	logfile
✔	8QG0	18386	2024-04-05	2023-09-05	3.43	3.78	3.53	3.8	0.004	0.73	2.0	0.05	17.66	0.00	2.198	21.24	0.50	6.4	93.6	0.0	-1.84	0.65	0.68	1.62	3.8	0.003	0.65	0.0	0.04	19.03	0.00	2.174	17.61	3.32	5.4	94.6	0.0	-1.48	0.43	0.64	0.69	0.85	6080	656	4	34	0	0	0	logfile

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