Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8W9o	37377	2024-04-06	2023-09-05	2.8	2.67	2.80	2.8	0.005	0.54	0.0	0.04	15.90	0.00	2.217	8.65	2.31	4.0	96.0	0.0	0.95	0.59	0.82	3.45	2.8	0.003	0.52	0.0	0.04	16.05	0.00	2.270	8.73	2.83	3.4	96.6	0.0	1.91	0.32	0.58	0.81	2.79	6862	854	4	0	4	0	0	logfile
✔	8W9N	37376	2024-04-06	2023-09-05	2.7	2.62	2.70	2.8	0.004	0.59	0.0	0.04	14.68	0.00	2.189	8.29	0.64	3.4	96.4	0.1	1.27	0.63	0.86	3.23	2.8	0.002	0.48	0.0	0.04	15.47	0.00	2.218	7.93	2.06	2.6	97.3	0.1	2.83	0.98	0.63	0.85	2.66	6860	854	4	0	2	0	0	logfile
✔	8QG0	18386	2024-04-05	2023-09-05	3.43	3.78	3.53	3.8	0.004	0.73	2.0	0.05	17.66	0.00	2.198	21.24	0.50	6.4	93.6	0.0	-1.84	0.65	0.68	1.62	3.8	0.003	0.65	0.0	0.04	19.03	0.00	2.174	17.61	3.32	5.4	94.6	0.0	-1.48	0.43	0.64	0.69	0.85	6080	656	4	34	0	0	0	logfile
✔	8W9T	37381	2024-04-06	2023-09-05	2.6	2.34	2.82	2.7	0.005	0.60	0.0	0.04	12.30	0.00	2.090	8.43	0.00	1.7	98.1	0.2	-1.88	0.54	0.80	3.36	2.7	0.002	0.52	0.0	0.04	14.71	0.00	2.119	6.42	1.87	1.7	98.3	0.0	2.58	0.41	0.54	0.80	3.50	6574	852	6	0	2	4	0	logfile
✔	8U2C	41845	2024-04-09	2023-09-05	2.5	2.75	2.49	2.9	0.012	1.88	5.0	0.10	13.83	0.02	2.543	0.27	1.85	4.1	95.6	0.3	-1.26	0.75	0.80	3.98	2.9	0.003	0.72	0.0	0.04	16.40	0.00	2.185	8.18	2.69	3.5	96.4	0.1	0.82	1.27	0.75	0.83	2.38	15042	1948	10	0	0	0	0	logfile
✔	8QFS	18383	2024-04-08	2023-09-04	2.7	2.85	2.64	2.7	0.006	0.65	0.0	0.04	20.05	0.02	1.966	7.90	4.62	3.1	96.8	0.1	1.82	0.85	0.89	3.35	2.7	0.004	0.71	0.0	0.04	19.90	0.01	1.845	7.20	3.41	3.6	96.2	0.1	1.96	0.23	0.85	0.90	3.41	13294	1576	4	61	2	0	0	logfile
✔	8QFD	18382	2024-04-09	2023-09-04	2.2	2.62	2.28	2.5	0.004	0.60	0.0	0.04	22.98	0.00	1.804	2.04	0.95	1.6	98.4	0.0	0.87	0.77	0.90	5.55	2.5	0.005	0.64	0.0	0.04	22.63	0.01	1.877	2.44	1.12	1.3	98.7	0.0	0.99	0.12	0.77	0.90	5.51	125372	6253	97	3393	166	2164	0	logfile
✔	8W8Q	37356	2024-04-06	2023-09-04	2.89	2.84	2.69	2.9	0.005	0.74	0.0	0.05	15.29	0.00	2.216	10.52	1.71	1.6	98.4	0.0	1.04	0.72	0.85	3.59	2.9	0.003	0.56	0.0	0.04	16.29	0.00	2.227	8.06	3.64	1.8	98.2	0.0	1.32	1.10	0.71	0.86	3.51	8168	1044	5	0	0	0	0	logfile
✔	8W8R	37357	2024-04-06	2023-09-04	3.3	3.13	3.14	3.2	0.006	0.82	0.0	0.06	16.73	0.00	2.227	7.59	1.64	5.2	94.8	0.0	-0.20	0.68	0.85	2.57	3.2	0.003	0.56	0.0	0.04	17.08	0.00	2.088	4.57	2.77	4.3	95.7	0.0	0.21	0.26	0.65	0.85	2.45	9018	1142	6	0	2	0	0	logfile
✔	8W8S	37358	2024-04-05	2023-09-04	3.3	4.07	2.88	3.9	0.005	0.77	0.0	0.05	16.34	0.01	2.310	8.96	1.64	4.0	96.0	0.0	1.56	0.57	0.81	1.74	3.9	0.003	0.57	0.0	0.04	16.69	0.01	2.277	4.15	1.64	3.2	96.8	0.0	2.56	0.29	0.57	0.82	1.61	2265	281	2	0	2	0	0	logfile
✔	8U1X	41837	2024-04-07	2023-09-04	2.7	3.42	2.79	3.2	0.006	0.82	0.0	0.05	13.61	0.01	1.988	3.48	0.00	3.1	96.9	0.1	-5.72	0.78	0.85	3.50	3.2	0.004	0.65	0.0	0.04	15.16	0.00	2.022	6.87	0.90	2.8	97.2	0.0	0.78	1.15	0.77	0.84	2.64	11040	1375	4	0	2	0	0	logfile
✔	8U1S	41826	2024-04-09	2023-09-02	3.21	3.93	3.31	3.8	0.023	1.95	9.0	0.10	10.17	0.01	1.314	5.29	0.79	6.0	93.3	0.6	-0.28	0.73	0.76	2.59	3.8	0.005	0.97	1.0	0.05	15.29	0.00	2.165	16.77	4.00	6.5	93.2	0.3	-1.28	0.85	0.66	0.73	2.18	17465	2241	16	0	4	0	0	logfile
✔	8U1U	41829	2024-04-07	2023-09-02	3.1	3.41	—	3.3	0.004	0.71	0.0	0.05	13.15	0.01	2.003	6.13	0.00	3.5	96.5	0.0	0.26	0.72	0.82	3.41	3.3	0.005	0.64	0.0	0.04	15.14	0.00	2.075	10.51	1.72	3.8	96.2	0.0	0.38	1.11	0.73	0.85	2.61	9507	1206	6	0	1	0	0	logfile
✔	8W89	37349	2024-04-06	2023-09-01	3.0	3.35	3.11	3.3	0.006	0.83	0.0	0.06	13.33	0.00	2.334	4.90	0.90	3.4	96.6	0.0	0.85	0.63	0.81	2.98	3.3	0.003	0.59	0.0	0.04	15.86	0.00	2.107	8.46	2.13	2.3	97.7	0.0	0.77	0.97	0.62	0.83	2.81	8230	1043	6	0	1	1	0	logfile
✔	8U1Q	41824	2024-04-10	2023-09-01	3.36	3.66	3.33	3.6	0.021	1.93	4.0	0.11	10.36	0.01	2.182	1.42	0.00	4.1	95.0	0.8	-0.75	0.78	0.81	3.32	3.6	0.004	0.84	0.0	0.05	14.60	0.00	2.124	11.93	3.36	7.7	92.0	0.3	-2.09	0.69	0.78	0.83	2.15	19016	2448	16	0	8	0	0	logfile
✔	8U1R	41825	2024-04-07	2023-09-01	3.6	3.81	3.64	3.8	0.005	0.77	0.0	0.05	15.16	0.00	2.182	5.32	1.05	3.3	96.7	0.0	-0.29	0.77	0.84	2.91	3.8	0.003	0.57	0.0	0.04	16.10	0.00	2.166	7.05	3.06	3.6	96.4	0.0	0.57	1.01	0.78	0.84	2.68	9126	1197	3	0	0	0	0	logfile
✔	8QEN	18373	2024-04-10	2023-09-01	3.4	2.69	3.47	3.3	0.003	0.54	0.0	0.04	10.63	0.00	2.118	7.73	2.20	5.0	94.9	0.1	0.22	0.75	0.75	2.14	3.3	0.003	0.60	0.0	0.04	15.06	0.00	2.180	10.92	2.67	5.4	94.5	0.1	-0.02	2.69	0.77	0.80	1.82	19007	2363	2	0	1	0	0	logfile
✔	8W8A	37350	2024-04-06	2023-09-01	2.8	3.15	2.86	3.1	0.006	0.72	1.0	0.05	12.97	0.00	2.280	5.44	0.89	2.8	97.2	0.0	0.81	0.63	0.84	4.00	3.1	0.003	0.54	0.0	0.04	15.73	0.00	2.134	7.09	2.01	2.2	97.8	0.0	1.22	0.39	0.62	0.85	3.66	8260	1045	6	0	1	1	0	logfile
✔	8W88	37348	2024-04-06	2023-09-01	2.6	2.99	2.75	2.9	0.005	0.59	0.0	0.04	14.74	0.01	2.143	4.00	0.34	2.7	97.3	0.0	1.00	0.71	0.87	4.27	3.0	0.002	0.50	0.0	0.04	15.84	0.00	2.249	5.84	2.35	1.9	98.1	0.0	1.60	0.48	0.59	0.84	3.45	8307	1039	6	0	4	0	0	logfile
✔	8W8B	37351	2024-04-06	2023-09-01	3.0	3.35	3.12	3.3	0.003	0.53	0.0	0.04	14.54	0.00	2.063	4.34	0.54	2.3	97.7	0.0	1.35	0.67	0.86	3.99	3.3	0.002	0.53	0.0	0.04	15.26	0.00	2.077	6.17	1.18	2.4	97.6	0.0	1.55	0.31	0.65	0.86	3.22	8734	1096	6	0	7	0	0	logfile

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