Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8U1N	41818	2024-04-06	2023-09-01	3.9	4.61	3.85	4.1	0.005	1.17	0.0	0.05	17.98	0.00	1.883	17.84	0.00	4.5	95.5	0.0	-1.18	0.91	0.78	1.29	4.1	0.004	0.66	0.0	0.04	18.37	0.00	1.855	21.65	4.80	5.7	94.3	0.0	-1.43	1.00	0.92	0.80	1.21	8164	994	4	0	4	0	0	logfile
✔	8W87	37347	2024-04-06	2023-09-01	2.8	3.17	2.93	3.2	0.003	0.56	0.0	0.04	15.67	0.01	2.193	3.86	0.45	1.9	98.1	0.0	1.49	0.60	0.86	3.88	3.2	0.003	0.52	0.0	0.04	16.36	0.00	2.228	5.45	2.48	1.8	98.2	0.0	1.11	0.32	0.52	0.82	3.73	8228	1045	6	0	1	0	0	logfile
✔	8U1L	41816	2024-04-08	2023-09-01	3.7	5.25	3.73	3.0	0.005	1.07	0.0	0.05	14.74	0.00	1.947	14.42	0.00	2.2	97.8	0.0	0.39	0.91	0.70	0.05	3.0	0.002	0.64	0.0	0.04	15.95	0.00	2.029	17.51	2.88	2.6	97.4	0.0	0.01	0.54	0.93	0.80	0.18	12595	1543	6	0	4	0	0	logfile
✔	8W8B	37351	2024-04-06	2023-09-01	3.0	3.35	3.12	3.3	0.003	0.53	0.0	0.04	14.54	0.00	2.063	4.34	0.54	2.3	97.7	0.0	1.35	0.67	0.86	3.99	3.3	0.002	0.53	0.0	0.04	15.26	0.00	2.077	6.17	1.18	2.4	97.6	0.0	1.55	0.31	0.65	0.86	3.22	8734	1096	6	0	7	0	0	logfile
✔	8U1M	41817	2024-04-06	2023-09-01	3.5	5.34	3.49	3.4	0.005	1.17	0.0	0.05	16.52	0.00	1.781	23.45	0.35	5.0	95.0	0.0	-1.18	0.92	0.72	0.71	3.0	0.003	0.62	0.0	0.04	17.23	0.00	1.873	23.83	2.78	5.3	94.7	0.0	-1.59	0.45	0.93	0.75	0.73	7882	957	4	0	4	0	0	logfile
✔	8U1o	41819	2024-04-09	2023-09-01	3.4	2.61	3.67	3.4	0.005	1.00	0.0	0.06	16.71	0.01	2.225	12.44	0.92	7.7	92.0	0.4	-2.51	0.56	0.72	1.67	3.4	0.003	0.76	0.0	0.05	17.19	0.00	2.092	21.87	4.78	8.0	91.7	0.3	-2.32	0.48	0.56	0.73	1.60	15096	1989	3	0	0	0	0	logfile
✔	8U1R	41825	2024-04-07	2023-09-01	3.6	3.81	3.64	3.8	0.005	0.77	0.0	0.05	15.16	0.00	2.182	5.32	1.05	3.3	96.7	0.0	-0.29	0.77	0.84	2.91	3.8	0.003	0.57	0.0	0.04	16.10	0.00	2.166	7.05	3.06	3.6	96.4	0.0	0.57	1.01	0.78	0.84	2.68	9126	1197	3	0	0	0	0	logfile
✔	8U1C	41809	2024-04-10	2023-08-31	2.89	3.20	2.96	3.2	0.023	1.85	0.0	0.11	10.04	0.01	2.353	2.24	0.20	4.5	95.1	0.3	0.02	0.74	0.84	4.37	3.2	0.003	0.65	0.0	0.04	15.98	0.00	2.156	11.41	3.11	4.3	95.5	0.2	-0.73	0.77	0.69	0.88	4.66	18380	2348	16	0	8	0	0	logfile
✔	8U1D	41810	2024-04-05	2023-08-31	4.25	4.46	4.28	4.4	0.006	1.05	0.0	0.06	13.61	0.01	2.280	9.04	0.52	7.9	91.7	0.3	-2.32	0.68	0.73	—	4.4	0.003	0.66	0.0	0.04	13.55	0.00	2.153	11.43	0.00	7.0	92.8	0.2	-1.26	1.62	0.71	0.75	—	5109	650	4	0	1	0	0	logfile
✔	8QEE	18353	2024-04-08	2023-08-31	2.43	2.62	2.45	2.7	0.002	0.45	0.0	0.04	17.85	0.00	2.021	4.01	2.15	1.7	98.3	0.0	2.41	0.61	0.81	4.25	2.7	0.003	0.52	0.0	0.04	17.01	0.00	1.985	5.79	2.55	1.7	98.2	0.1	2.17	0.69	0.62	0.81	3.68	13746	823	3	0	6	130	6889	logfile
✔	8QEB	18350	2024-04-09	2023-08-31	3.3	3.60	3.37	3.6	0.003	0.49	0.0	0.04	17.62	0.00	2.137	5.26	0.41	4.3	95.7	0.0	-0.18	0.56	0.76	2.00	3.6	0.005	0.57	0.0	0.04	16.73	0.00	2.059	8.72	2.13	5.9	94.0	0.1	-0.37	0.35	0.64	0.80	2.00	17671	1098	5	0	9	1	8700	logfile
✔	8QED	18352	2024-04-10	2023-08-31	3.27	3.56	3.31	3.6	0.004	0.50	0.0	0.04	15.81	0.00	1.902	4.27	0.10	4.7	95.1	0.2	0.44	0.64	0.81	2.28	3.6	0.003	0.49	0.0	0.04	15.80	0.00	1.917	6.44	1.32	4.9	95.0	0.1	0.77	0.27	0.65	0.82	2.04	17743	1101	6	0	11	0	8712	logfile
✔	8U13	41800	2024-04-10	2023-08-30	3.8	4.21	3.57	3.9	0.004	0.64	0.0	0.04	27.10	0.00	1.330	13.20	0.00	2.5	97.5	0.0	0.79	0.88	0.84	1.36	3.9	0.004	0.73	0.0	0.04	27.59	0.00	2.158	14.58	3.30	3.9	96.1	0.0	0.34	0.50	0.88	0.85	1.14	12825	858	12	293	2	0	0	logfile
✔	8QE5	18343	2024-04-07	2023-08-30	2.6	2.68	2.59	2.6	0.004	0.60	0.0	0.04	17.25	0.01	2.197	7.21	2.85	3.3	96.7	0.0	1.17	0.79	0.87	3.48	2.6	0.004	0.60	0.0	0.04	17.41	0.00	2.163	7.53	3.53	2.9	97.1	0.0	1.46	0.21	0.78	0.88	3.69	10794	1340	1	0	0	0	0	logfile
✔	8U14	41801	2024-04-10	2023-08-30	3.9	4.27	3.88	4.0	0.003	0.65	0.0	0.04	26.36	0.00	1.330	14.66	0.00	3.3	96.7	0.0	0.65	0.88	0.83	1.05	4.0	0.004	0.73	0.0	0.04	27.40	0.00	2.124	17.98	3.73	3.8	96.2	0.0	0.65	0.48	0.88	0.84	0.93	13995	1006	13	293	2	0	0	logfile
✔	8W77	37336	2024-04-05	2023-08-30	3.61	4.00	3.49	3.9	0.004	0.71	0.0	0.05	10.06	0.01	2.463	0.72	0.00	0.8	99.2	0.0	2.45	0.51	0.74	3.54	3.9	0.003	0.55	0.0	0.04	11.02	0.01	2.401	2.51	2.22	1.6	98.4	0.0	3.79	0.88	0.58	0.78	2.79	1601	260	1	0	0	0	0	logfile
✔	8U0T	41784	2024-04-06	2023-08-29	3.2	3.49	3.24	3.5	0.013	1.40	2.0	0.09	10.78	0.01	2.291	1.69	0.47	2.7	97.1	0.1	-1.05	0.70	0.79	4.40	3.5	0.004	0.64	0.0	0.04	13.73	0.00	2.215	3.62	1.56	2.3	97.7	0.0	0.69	0.57	0.72	0.85	3.20	6761	849	4	0	10	0	0	logfile
✔	8W6i	37324	2024-04-06	2023-08-29	3.7	4.25	3.88	4.1	0.004	1.10	0.0	0.06	13.87	0.01	2.308	5.93	0.13	5.1	94.6	0.3	-3.33	0.69	0.78	0.81	4.1	0.004	0.82	1.0	0.05	15.92	0.01	2.172	17.35	2.89	5.1	94.7	0.2	-0.56	0.47	0.70	0.80	0.62	7750	1021	6	0	2	0	0	logfile
✔	8W6J	37325	2024-04-06	2023-08-29	3.4	3.85	3.59	3.8	0.006	1.25	4.0	0.06	14.81	0.01	2.303	6.61	0.46	8.0	91.6	0.4	-2.91	0.69	0.77	1.54	3.8	0.003	0.73	0.0	0.04	16.49	0.00	2.153	13.93	3.82	6.8	92.7	0.4	-0.48	0.52	0.70	0.81	1.18	8553	1127	7	0	2	0	0	logfile
✔	8U0V	41788	2024-04-12	2023-08-29	3.89	4.92	4.27	4.3	0.003	0.65	0.0	0.05	16.92	0.00	1.850	32.65	0.32	7.9	91.9	0.2	-1.02	0.88	0.80	0.55	4.3	0.003	0.59	0.0	0.04	17.04	0.00	1.872	32.88	3.01	8.1	91.8	0.2	-0.62	0.33	0.88	0.80	0.50	81859	5553	12	0	10	0	37662	logfile

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