Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8QCP	18331	2024-04-06	2023-08-28	3.21	3.22	3.18	3.3	0.011	1.86	1.0	0.09	11.52	0.01	2.543	0.00	0.00	7.5	92.5	0.0	-2.03	0.31	0.78	5.53	3.3	0.004	0.61	0.0	0.05	16.24	0.00	2.181	2.00	2.04	5.4	94.6	0.0	-2.13	0.96	0.35	0.86	5.39	7002	453	6	0	0	0	3567	logfile
✔	8QCR	18333	2024-04-05	2023-08-28	2.75	2.70	2.59	2.9	0.011	1.78	0.0	0.08	9.60	0.01	2.505	0.00	0.00	3.0	97.0	0.0	-1.85	0.33	0.79	7.24	2.9	0.003	0.52	0.0	0.05	16.01	0.00	2.187	3.81	0.56	0.5	99.5	0.0	-0.39	1.40	0.39	0.87	7.24	3153	204	3	0	0	0	1608	logfile
✔	8QCQ	18332	2024-04-12	2023-08-28	2.3	1.84	2.25	2.1	0.008	1.70	1.0	0.11	22.83	0.02	1.275	0.82	1.07	4.6	95.1	0.2	-2.32	0.58	0.76	4.42	2.0	0.007	1.00	0.0	0.05	23.60	0.01	1.590	10.38	2.61	4.8	95.2	0.1	-1.19	0.92	0.66	0.78	4.21	136664	4822	81	4550	247	1022	0	logfile
✔	8TZo	41764	2024-04-06	2023-08-27	3.1	3.45	3.14	3.4	0.004	0.70	0.0	0.04	17.02	0.00	2.252	5.32	0.22	3.1	96.9	0.0	0.82	0.62	0.85	2.93	3.4	0.003	0.52	0.0	0.04	15.45	0.00	2.256	6.24	2.05	3.5	96.5	0.0	0.88	0.87	0.61	0.84	2.82	8737	1070	7	0	10	0	0	logfile
✔	8W5K	37295	2024-04-06	2023-08-27	3.6	3.84	3.46	3.8	0.004	0.72	0.0	0.04	17.12	0.00	2.076	8.86	0.88	2.5	97.5	0.0	0.90	0.66	0.78	2.64	3.8	0.004	0.67	0.0	0.04	17.42	0.00	2.105	8.73	6.68	3.4	96.6	0.0	0.86	0.39	0.65	0.75	2.41	7379	942	11	0	1	0	0	logfile
✔	8TZL	41762	2024-04-10	2023-08-27	3.55	3.98	3.46	3.8	0.004	0.51	0.0	0.04	10.72	0.00	1.922	2.28	0.00	2.5	97.5	0.0	3.76	0.71	0.78	1.99	3.8	0.003	0.50	0.0	0.04	13.98	0.00	1.922	6.46	1.45	3.3	96.7	0.0	3.33	0.73	0.71	0.79	2.38	18875	1398	7	0	4	0	9042	logfile
✔	8W5J	37294	2024-04-06	2023-08-27	4.4	4.87	4.36	4.4	0.002	0.63	0.0	0.04	12.49	0.01	2.174	13.63	0.00	2.1	97.9	0.0	1.07	0.56	0.79	—	4.4	0.003	0.66	0.0	0.04	13.04	0.00	2.047	15.07	0.00	2.8	97.2	0.0	0.96	0.46	0.57	0.80	—	7356	942	11	0	1	0	0	logfile
✔	8TZS	41768	2024-04-05	2023-08-27	3.84	4.01	3.90	4.0	0.005	0.87	0.0	0.05	15.83	0.01	2.170	9.05	0.24	3.6	96.4	0.0	0.65	0.65	0.77	1.99	4.0	0.003	0.71	0.0	0.04	16.71	0.00	2.218	11.21	4.96	4.2	95.8	0.0	1.58	0.94	0.66	0.77	1.31	3914	480	1	0	0	0	0	logfile
✔	8TZK	41761	2024-04-09	2023-08-27	3.55	3.97	3.48	3.8	0.004	0.53	0.0	0.04	11.13	0.00	1.922	2.51	0.00	3.1	96.9	0.0	3.24	0.72	0.79	1.99	3.8	0.003	0.52	0.0	0.04	14.50	0.00	1.919	6.96	1.20	4.0	96.0	0.0	2.76	0.77	0.73	0.80	2.16	17077	1149	7	0	4	0	8468	logfile
✔	8TZP	41765	2024-04-06	2023-08-27	3.23	3.70	3.38	3.6	0.004	0.73	0.0	0.04	15.23	0.01	1.341	5.58	0.27	2.8	97.2	0.0	1.16	0.67	0.84	2.54	3.6	0.005	0.62	0.0	0.04	15.88	0.00	2.141	6.74	2.56	4.5	95.5	0.0	0.48	0.32	0.68	0.85	2.42	6920	859	5	0	2	0	0	logfile
✔	8TZJ	41760	2024-04-08	2023-08-27	3.51	3.99	3.46	3.9	0.004	0.67	0.0	0.04	12.13	0.00	2.229	2.62	0.15	1.8	98.2	0.0	2.16	0.65	0.77	1.68	3.9	0.002	0.53	0.0	0.03	15.32	0.00	1.915	6.13	0.59	2.3	97.7	0.0	2.65	0.86	0.70	0.80	1.33	13346	846	6	0	4	0	6772	logfile
✔	8TZ3	41732	2024-04-12	2023-08-26	2.31	2.43	2.37	2.5	0.011	0.99	0.0	0.05	16.56	0.01	2.262	1.78	0.00	2.8	97.0	0.2	-3.08	0.62	0.80	5.16	2.5	0.003	0.52	0.0	0.04	16.36	0.00	2.121	3.04	0.40	1.6	98.4	0.0	2.71	0.55	0.62	0.81	4.00	24810	1599	9	0	18	15	12165	logfile
✔	8TZ7	41736	2024-04-12	2023-08-26	3.0	3.25	3.01	3.3	0.006	0.64	0.0	0.04	12.68	0.00	2.171	2.36	0.48	1.5	98.5	0.0	3.50	0.60	0.78	3.19	3.3	0.003	0.51	0.0	0.03	15.26	0.00	2.185	3.10	1.76	2.8	97.2	0.0	1.84	1.31	0.58	0.80	3.38	24408	1599	6	0	6	0	12069	logfile
✔	8TZB	41753	2024-04-06	2023-08-26	3.1	2.37	—	3.2	0.006	0.65	0.0	0.04	15.01	0.01	2.177	10.41	0.30	5.7	94.1	0.1	-0.33	0.76	0.73	2.27	3.2	0.004	0.60	0.0	0.04	15.93	0.00	2.163	11.34	4.05	6.5	93.4	0.1	-0.39	0.30	0.75	0.72	2.37	7283	1012	3	0	1	0	0	logfile
✔	8TZD	41755	2024-04-08	2023-08-26	3.2	3.53	3.30	3.6	0.005	0.53	0.0	0.04	12.71	0.00	2.183	3.72	0.32	1.9	98.1	0.0	2.98	0.61	0.80	2.33	3.6	0.002	0.47	0.0	0.04	15.03	0.00	2.018	4.92	0.73	1.1	98.9	0.0	3.24	0.43	0.69	0.83	1.99	12175	1587	6	0	4	0	0	logfile
✔	8TZE	41756	2024-04-05	2023-08-26	2.9	3.19	2.95	3.2	0.006	0.77	0.0	0.05	15.06	0.02	2.140	7.97	1.30	3.8	95.9	0.3	0.15	0.49	0.75	3.59	3.2	0.003	0.52	0.0	0.04	15.99	0.00	2.204	5.90	1.74	3.7	96.2	0.1	0.42	0.35	0.49	0.76	3.45	6255	787	2	0	1	0	0	logfile
✔	8TZ5	41734	2024-04-12	2023-08-26	2.74	2.95	2.87	3.0	0.011	0.84	0.0	0.04	16.17	0.00	2.128	1.42	0.24	2.1	97.9	0.0	2.53	0.60	0.79	3.06	3.0	0.004	0.53	0.0	0.04	17.08	0.00	1.890	2.84	0.63	2.4	97.6	0.0	2.44	0.60	0.63	0.82	3.17	24846	1599	6	0	18	0	12165	logfile
✔	8TZA	41739	2024-04-12	2023-08-26	3.43	3.77	3.63	3.8	0.003	0.45	0.0	0.03	10.70	0.00	2.212	2.55	0.00	1.0	99.0	0.0	4.14	0.61	0.78	2.22	3.8	0.002	0.47	0.0	0.03	14.79	0.00	1.948	4.57	1.52	2.7	97.3	0.0	2.88	0.85	0.62	0.81	1.77	24297	1599	6	0	3	0	12069	logfile
✔	8TZ8	41737	2024-04-12	2023-08-26	3.19	3.59	3.39	3.6	0.006	0.57	0.0	0.04	12.70	0.00	1.931	3.87	0.00	1.7	98.3	0.0	2.71	0.58	0.78	2.76	3.6	0.004	0.49	0.0	0.04	15.12	0.00	1.962	4.60	1.76	3.4	96.6	0.0	2.58	1.33	0.57	0.80	2.31	24426	1599	6	0	5	0	12101	logfile
✔	8TZ1	41730	2024-04-12	2023-08-26	2.54	3.16	2.64	3.0	0.011	0.88	0.0	0.04	16.72	0.00	2.123	1.34	0.48	0.9	99.1	0.0	3.54	0.58	0.77	4.42	3.0	0.005	0.52	0.0	0.04	16.77	0.00	2.076	3.23	0.55	3.1	96.9	0.0	2.47	0.60	0.56	0.77	3.52	24852	1599	9	0	21	6	12165	logfile

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