Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8TZD	41755	2024-04-08	2023-08-26	3.2	3.53	3.30	3.6	0.005	0.53	0.0	0.04	12.71	0.00	2.183	3.72	0.32	1.9	98.1	0.0	2.98	0.61	0.80	2.33	3.6	0.002	0.47	0.0	0.04	15.03	0.00	2.018	4.92	0.73	1.1	98.9	0.0	3.24	0.43	0.69	0.83	1.99	12175	1587	6	0	4	0	0	logfile
✔	8TZ1	41730	2024-04-12	2023-08-26	2.54	3.16	2.64	3.0	0.011	0.88	0.0	0.04	16.72	0.00	2.123	1.34	0.48	0.9	99.1	0.0	3.54	0.58	0.77	4.42	3.0	0.005	0.52	0.0	0.04	16.77	0.00	2.076	3.23	0.55	3.1	96.9	0.0	2.47	0.60	0.56	0.77	3.52	24852	1599	9	0	21	6	12165	logfile
✔	8TZ9	41738	2024-04-12	2023-08-26	3.67	4.03	3.86	3.9	0.004	0.55	0.0	0.04	11.99	0.00	2.295	3.87	0.72	1.7	98.3	0.0	3.31	0.62	0.74	1.58	3.9	0.004	0.57	0.0	0.04	14.91	0.00	2.055	8.19	1.60	2.9	97.1	0.0	2.52	1.14	0.63	0.78	1.12	24297	1599	6	0	3	0	12069	logfile
✔	8TYo	41727	2024-04-10	2023-08-25	2.75	3.05	2.90	3.1	0.003	0.51	0.0	0.04	13.93	0.00	2.100	4.67	0.00	4.3	95.7	0.0	0.72	0.60	0.78	3.50	3.1	0.005	0.59	0.0	0.05	15.20	0.00	2.184	5.73	1.73	4.6	95.3	0.0	0.57	0.34	0.64	0.82	3.22	19458	2451	7	0	29	0	0	logfile
✔	8QCA	18326	2024-04-09	2023-08-25	2.84	3.04	2.86	3.1	0.003	0.46	0.0	0.04	13.84	0.00	2.179	4.24	0.00	2.5	97.5	0.0	0.77	0.63	0.77	3.04	3.1	0.002	0.45	0.0	0.04	15.65	0.00	2.082	14.60	1.65	3.3	96.7	0.0	0.94	0.28	0.70	0.84	2.43	17573	2326	6	4	0	0	117	logfile
✔	8QBT	18320	2024-04-14	2023-08-25	2.2	1.69	2.17	1.9	0.008	1.71	6.0	0.11	22.93	0.02	1.281	0.93	0.91	5.5	94.3	0.2	-2.11	0.50	0.69	4.39	1.7	0.006	1.01	0.0	0.05	23.55	0.01	1.735	9.74	3.70	5.4	94.5	0.1	-1.21	0.92	0.58	0.73	4.38	141132	4848	81	4738	376	1239	0	logfile
✔	8QCF	18329	2024-04-14	2023-08-25	2.55	2.63	2.55	2.6	0.003	0.50	0.0	0.04	13.52	0.00	2.221	2.35	0.00	3.4	96.6	0.0	0.71	0.77	0.90	4.05	2.6	0.002	0.50	0.0	0.04	15.74	0.00	2.178	2.99	0.91	3.2	96.8	0.0	0.66	0.89	0.77	0.90	3.44	30751	3910	14	34	1	0	0	logfile
✔	8QCB	18328	2024-04-07	2023-08-25	2.8	2.99	2.84	3.0	0.002	0.45	0.0	0.04	12.78	0.00	2.288	3.19	0.00	2.5	97.5	0.0	1.02	0.61	0.76	3.54	3.0	0.004	0.56	0.0	0.04	15.76	0.00	2.230	3.91	2.65	3.0	97.0	0.0	0.88	0.90	0.74	0.88	3.09	11423	1506	5	0	0	0	0	logfile
✔	8TYQ	41728	2024-04-06	2023-08-25	2.99	2.37	—	3.2	0.007	0.98	3.0	0.05	14.10	0.01	2.195	13.81	0.53	3.7	96.1	0.2	-0.16	0.71	0.64	1.66	3.2	0.003	0.73	0.0	0.05	16.35	0.00	2.176	12.41	1.27	3.1	96.9	0.0	-0.32	1.22	0.78	0.76	2.23	8529	1069	3	0	1	0	0	logfile
✔	8W4U	37270	2024-04-14	2023-08-25	3.3	3.73	3.53	3.6	0.004	0.65	0.0	0.20	18.56	0.00	1.907	14.20	0.60	2.9	97.1	0.0	2.22	0.68	0.75	1.27	3.6	0.003	0.56	0.0	0.03	17.80	0.00	1.916	14.20	2.51	3.4	96.6	0.0	2.34	1.45	0.69	0.77	1.30	31768	1988	12	0	8	0	15620	logfile
✔	8TXW	41707	2024-04-08	2023-08-24	3.6	3.90	3.54	3.7	0.004	0.54	0.0	0.03	26.88	0.00	1.328	7.51	0.14	2.0	98.0	0.0	2.65	0.85	0.87	0.96	3.7	0.004	0.58	0.0	0.03	27.35	0.00	2.163	7.72	0.83	2.5	97.4	0.1	2.54	0.35	0.88	0.89	0.69	12835	857	12	294	0	0	0	logfile
✔	8TXV	41706	2024-04-08	2023-08-24	3.8	4.05	3.67	3.9	0.003	0.56	0.0	0.03	26.65	0.00	1.329	7.46	0.14	2.3	97.7	0.0	2.47	0.85	0.86	1.11	3.9	0.004	0.62	0.0	0.03	27.30	0.00	2.151	9.48	2.64	2.6	97.4	0.0	2.48	0.45	0.87	0.89	1.43	12836	857	12	294	0	0	0	logfile
✔	8TXX	41708	2024-04-08	2023-08-24	3.7	3.96	3.60	3.8	0.004	0.55	0.0	0.03	26.69	0.00	1.329	8.69	0.00	2.9	97.1	0.0	2.62	0.86	0.88	1.17	3.8	0.004	0.57	0.0	0.03	27.44	0.00	2.090	8.23	2.72	3.4	96.6	0.0	2.81	1.39	0.87	0.88	0.86	12969	873	12	294	0	0	0	logfile
✔	8TY1	41710	2024-04-08	2023-08-24	3.46	3.78	3.53	3.7	0.005	0.89	0.0	0.05	19.17	0.01	2.005	22.87	0.68	10.5	89.0	0.5	-2.57	0.70	0.59	0.78	3.7	0.006	0.84	0.0	0.05	18.24	0.01	1.974	28.20	6.28	12.3	87.3	0.4	-2.84	0.47	0.72	0.64	0.81	13508	1675	6	0	12	0	0	logfile
✔	8W4o	37267	2024-04-05	2023-08-24	3.23	3.75	3.24	3.6	0.020	3.28	0.0	0.32	29.01	0.01	2.237	20.90	0.87	13.8	85.9	0.2	-2.53	0.60	0.84	2.19	3.6	0.003	1.24	0.0	0.08	21.10	0.00	2.228	10.04	3.18	8.4	91.4	0.2	-0.01	1.18	0.61	0.87	1.67	6046	497	6	0	52	0	0	logfile
✔	8W4P	37268	2024-04-05	2023-08-24	3.48	4.23	3.79	3.6	0.017	2.89	0.0	0.17	23.39	0.01	2.306	9.89	0.00	15.3	83.9	0.8	-3.29	0.42	0.75	1.40	3.6	0.006	1.16	0.0	0.09	18.42	0.00	2.192	10.82	4.80	13.7	86.1	0.3	-0.47	1.23	0.43	0.79	-0.13	4531	377	6	0	191	0	0	logfile
✔	8W4J	37266	2024-04-13	2023-08-24	3.06	3.82	3.13	3.3	0.003	0.48	0.0	0.04	11.81	0.00	2.155	4.34	0.05	4.1	95.8	0.1	0.64	0.87	0.89	2.51	3.3	0.002	0.49	0.0	0.04	13.06	0.00	2.212	4.86	0.72	4.0	96.0	0.0	1.17	0.90	0.88	0.91	2.23	27165	4059	8	0	0	0	0	logfile
✔	8TXR	41704	2024-04-10	2023-08-24	3.8	3.13	—	1.5	0.004	0.46	0.0	0.04	11.55	0.00	1.930	3.65	0.59	1.8	98.2	0.0	0.92	0.88	0.81	1.44	1.6	0.003	0.72	0.0	0.04	16.76	0.00	2.117	9.92	1.61	1.8	98.2	0.0	2.84	1.35	0.89	0.82	0.57	19020	2388	20	0	0	0	0	logfile
✔	8TY6	41711	2024-04-07	2023-08-24	3.3	3.52	3.45	3.5	0.002	0.44	0.0	0.04	11.55	0.00	2.144	4.89	2.71	2.1	97.9	0.0	2.36	0.74	0.81	2.58	3.5	0.004	0.60	0.0	0.04	15.23	0.01	2.001	8.32	2.62	2.3	97.7	0.0	2.08	0.60	0.73	0.80	2.04	9678	1260	6	0	0	0	0	logfile
✔	8TXo	41695	2024-04-10	2023-08-23	3.1	3.35	3.17	3.4	0.007	0.50	0.0	0.04	14.42	0.00	1.758	7.82	0.00	2.8	97.2	0.0	0.65	0.66	0.72	2.02	3.4	0.002	0.57	0.0	0.04	16.81	0.00	2.036	9.20	2.62	3.4	96.6	0.0	0.37	1.41	0.68	0.81	1.93	19794	2614	8	36	5	0	0	logfile

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