Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8KGo	37228	2024-04-08	2023-08-19	3.4	3.44	3.32	3.4	0.011	1.14	0.0	0.07	11.21	0.01	2.219	3.95	0.92	7.2	92.8	0.0	-4.07	0.72	0.85	3.37	3.4	0.002	0.53	0.0	0.04	15.26	0.00	2.136	5.93	1.91	3.2	96.8	0.0	-0.26	0.82	0.73	0.86	1.87	12141	1494	2	0	0	0	0	logfile
✔	8KGL	37225	2024-04-06	2023-08-19	4.3	4.47	4.30	4.3	0.007	1.06	0.0	0.05	9.44	0.01	2.276	8.04	0.00	7.9	92.1	0.0	-3.21	0.81	0.76	—	4.3	0.003	0.60	0.0	0.04	11.24	0.00	2.116	13.55	0.00	4.6	95.4	0.0	0.26	0.91	0.81	0.76	—	8084	984	2	0	0	0	0	logfile
✔	8KGK	37224	2024-04-06	2023-08-19	3.16	3.62	3.34	3.6	0.005	0.69	1.0	0.05	13.37	0.01	2.122	11.80	0.40	2.6	97.3	0.1	0.89	0.61	0.75	3.01	3.6	0.003	0.63	0.0	0.04	15.51	0.00	2.173	10.56	2.43	2.2	97.8	0.0	1.26	1.16	0.60	0.76	2.39	7476	1006	5	0	0	0	0	logfile
✔	8KGP	37229	2024-04-08	2023-08-19	3.3	3.40	3.26	3.4	0.011	1.05	0.0	0.07	11.20	0.01	2.314	5.05	0.76	5.9	94.1	0.0	-3.96	0.75	0.88	3.52	3.4	0.002	0.57	0.0	0.04	15.48	0.00	2.151	4.85	2.06	4.0	96.0	0.0	-0.10	1.60	0.76	0.89	2.58	12168	1498	2	0	0	0	0	logfile
✔	8TVY	41655	2024-04-11	2023-08-18	3.1	3.37	3.36	3.3	0.005	0.62	0.0	0.04	15.61	0.01	1.800	10.55	0.00	7.9	92.1	0.1	-0.36	0.77	0.80	2.63	3.3	0.003	0.55	0.0	0.04	16.85	0.00	1.881	11.33	1.14	6.9	93.0	0.1	-0.31	0.42	0.77	0.81	2.31	76945	4692	23	103	9	0	37409	logfile
✔	8Q8M	18255	2024-04-06	2023-08-18	2.95	3.13	2.89	3.1	0.011	1.96	7.0	0.12	11.82	0.01	2.510	0.00	0.00	7.4	92.6	0.0	-1.64	0.40	0.85	5.71	3.1	0.003	0.60	0.0	0.05	15.27	0.00	2.059	2.83	0.51	4.3	95.7	0.0	-1.60	1.09	0.41	0.87	5.85	7074	456	6	0	0	0	3606	logfile
✔	8TVP	41647	2024-04-07	2023-08-18	3.7	4.07	3.69	3.5	0.010	0.72	0.0	0.04	16.18	0.00	1.544	10.89	0.06	5.2	94.7	0.1	-0.31	0.85	0.79	2.25	3.5	0.003	0.47	0.0	0.04	16.43	0.00	1.947	12.20	0.52	4.8	95.1	0.1	0.19	0.34	0.85	0.79	2.12	63938	3748	22	103	443	0	29847	logfile
✔	8Q88	18249	2024-04-05	2023-08-18	2.95	2.99	2.96	3.1	0.011	1.82	1.0	0.09	9.88	0.01	2.489	0.85	0.25	4.3	95.7	0.0	-1.51	0.41	0.83	6.19	3.1	0.004	0.73	0.0	0.05	13.64	0.00	2.265	6.79	1.01	3.6	96.4	0.0	-2.41	1.31	0.39	0.87	5.37	3468	456	6	0	0	0	0	logfile
✔	8KGE	37218	2024-04-05	2023-08-18	3.8	3.74	3.72	3.7	0.004	0.87	0.0	0.05	17.21	0.01	2.103	13.80	10.88	9.3	90.5	0.2	-2.27	0.45	0.79	3.10	3.7	0.005	0.73	0.0	0.05	17.29	0.00	2.165	13.09	10.36	10.8	89.0	0.2	-1.88	0.36	0.49	0.82	2.52	3584	486	2	0	0	0	0	logfile
✔	8Q8L	18254	2024-04-05	2023-08-18	3.04	3.14	2.87	3.3	0.011	2.07	2.0	0.11	11.49	0.01	2.539	0.29	0.00	5.3	94.5	0.2	-2.17	0.33	0.74	5.41	3.2	0.006	1.39	0.0	0.05	14.32	0.00	2.064	6.19	3.85	4.8	95.2	0.0	-2.50	0.75	0.43	0.83	4.78	3405	447	6	0	0	0	0	logfile
✔	8Q8V	18262	2024-04-06	2023-08-18	3.8	3.56	3.64	3.9	0.012	2.00	2.0	0.09	12.46	0.01	2.510	1.71	0.00	6.4	93.6	0.0	-2.75	0.30	0.69	4.41	4.0	0.004	1.27	0.0	0.05	14.36	0.01	2.145	14.66	1.01	6.6	93.4	0.0	-3.14	2.97	0.32	0.78	4.93	7032	450	6	0	0	0	3588	logfile
✔	8Q8D	18251	2024-04-06	2023-08-18	3.04	2.88	2.87	3.0	0.011	1.85	2.0	0.08	13.26	0.01	2.504	0.00	0.00	2.9	97.1	0.0	-1.65	0.32	0.75	5.97	2.9	0.004	0.56	0.0	0.05	16.08	0.00	2.423	1.13	2.02	1.8	98.2	0.0	-1.48	1.53	0.40	0.87	5.93	7074	456	6	0	0	0	3606	logfile
✔	8TVQ	41648	2024-04-06	2023-08-18	4.6	5.27	4.92	4.7	0.004	0.74	0.0	0.04	15.38	0.00	1.187	17.40	0.00	6.4	93.6	0.1	-1.44	0.84	0.74	—	4.7	0.003	0.57	0.0	0.04	15.73	0.00	1.113	19.71	0.00	8.0	92.0	0.1	-1.33	0.56	0.85	0.76	—	57710	3424	20	100	443	0	26856	logfile
✔	8Q8C	18250	2024-04-06	2023-08-18	1.92	1.98	1.90	2.0	0.011	1.66	0.0	0.08	10.69	0.01	2.505	0.00	0.27	1.2	98.8	0.0	-1.44	0.21	0.65	7.52	1.9	0.003	0.50	0.0	0.05	15.18	0.00	2.146	1.06	0.81	1.4	98.6	0.0	-0.92	1.43	0.39	0.90	7.80	6618	429	6	0	0	0	3372	logfile
✔	8Q8E	18252	2024-04-06	2023-08-18	3.81	3.69	3.74	3.9	0.012	2.01	6.0	0.11	11.64	0.01	1.524	5.19	0.00	9.0	91.0	0.0	-2.95	0.28	0.52	2.07	4.0	0.003	0.80	0.0	0.05	15.19	0.01	2.133	12.17	6.15	6.8	93.2	0.0	-3.35	1.88	0.35	0.78	2.71	6810	894	12	0	0	0	0	logfile
✔	8Q8S	18259	2024-04-07	2023-08-18	2.68	2.07	2.67	2.3	0.011	2.11	3.0	0.10	9.52	0.01	2.513	0.47	0.00	7.2	92.8	0.0	-1.68	0.30	0.74	5.06	2.2	0.003	0.68	0.0	0.05	16.25	0.01	2.024	5.56	1.35	5.4	94.6	0.0	-2.75	1.86	0.31	0.79	4.99	10611	684	9	0	0	0	5409	logfile
✔	8Q8U	18261	2024-04-06	2023-08-18	3.3	3.53	3.24	3.8	0.011	1.97	3.0	0.11	12.59	0.01	2.505	0.00	0.00	6.3	93.7	0.0	-3.01	0.42	0.76	3.25	3.8	0.003	0.60	0.0	0.05	13.45	0.00	2.010	5.44	0.54	4.6	95.4	0.0	-2.14	1.35	0.45	0.77	2.83	6642	426	6	0	0	0	3396	logfile
✔	8TVX	41654	2024-04-06	2023-08-18	3.7	4.46	3.75	4.0	0.004	0.73	0.0	0.04	13.49	0.01	1.340	10.82	0.00	4.1	95.8	0.1	-0.36	0.86	0.79	1.88	4.0	0.004	0.72	1.0	0.04	15.04	0.00	1.210	14.74	0.99	5.1	94.8	0.1	0.05	1.75	0.86	0.79	1.72	59056	3748	21	56	9	0	28608	logfile
✔	8TVW	41653	2024-04-07	2023-08-18	3.6	4.13	3.72	3.9	0.004	0.58	0.0	0.04	13.74	0.01	1.903	7.21	0.00	4.0	95.9	0.1	0.31	0.83	0.76	2.24	3.9	0.003	0.53	0.0	0.04	15.17	0.00	1.527	9.19	0.73	4.7	95.2	0.1	0.40	0.49	0.83	0.78	1.90	61431	3748	21	56	9	0	30468	logfile
✔	8TVR	41649	2024-04-16	2023-08-18	2.8	3.01	—	2.9	0.003	0.53	0.0	0.05	16.18	0.00	2.196	7.80	1.72	4.9	95.1	0.0	-1.14	0.65	0.85	4.19	3.0	0.007	0.75	0.0	0.06	17.17	0.01	2.022	8.71	3.92	5.9	94.1	0.0	-1.53	1.19	0.65	0.86	4.34	38532	4950	24	0	0	0	0	logfile

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