Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Q8F	18253	2024-04-05	2023-08-18	2.93	2.97	2.77	3.0	0.011	1.82	0.0	0.08	12.08	0.01	2.504	0.00	0.76	5.4	94.6	0.0	-1.60	0.37	0.78	6.53	3.0	0.007	0.79	0.0	0.05	16.93	0.00	2.186	4.95	3.79	3.6	96.4	0.0	-2.12	3.80	0.42	0.91	4.91	3468	456	6	0	0	0	0	logfile
✔	8Q8S	18259	2024-04-07	2023-08-18	2.68	2.07	2.67	2.3	0.011	2.11	3.0	0.10	9.52	0.01	2.513	0.47	0.00	7.2	92.8	0.0	-1.68	0.30	0.74	5.06	2.2	0.003	0.68	0.0	0.05	16.25	0.01	2.024	5.56	1.35	5.4	94.6	0.0	-2.75	1.86	0.31	0.79	4.99	10611	684	9	0	0	0	5409	logfile
✔	8Q8C	18250	2024-04-06	2023-08-18	1.92	1.98	1.90	2.0	0.011	1.66	0.0	0.08	10.69	0.01	2.505	0.00	0.27	1.2	98.8	0.0	-1.44	0.21	0.65	7.52	1.9	0.003	0.50	0.0	0.05	15.18	0.00	2.146	1.06	0.81	1.4	98.6	0.0	-0.92	1.43	0.39	0.90	7.80	6618	429	6	0	0	0	3372	logfile
✔	8Q8R	18258	2024-04-05	2023-08-18	2.1	1.89	2.15	1.9	0.011	1.82	6.0	0.10	11.11	0.01	2.505	0.00	0.00	11.0	89.0	0.0	-1.41	0.39	0.83	5.91	1.9	0.007	0.86	0.0	0.06	16.75	0.00	2.274	4.81	6.06	8.6	91.4	0.0	-1.70	2.41	0.46	0.88	6.08	3468	456	6	0	0	0	0	logfile
✔	8Q8U	18261	2024-04-06	2023-08-18	3.3	3.53	3.24	3.8	0.011	1.97	3.0	0.11	12.59	0.01	2.505	0.00	0.00	6.3	93.7	0.0	-3.01	0.42	0.76	3.25	3.8	0.003	0.60	0.0	0.05	13.45	0.00	2.010	5.44	0.54	4.6	95.4	0.0	-2.14	1.35	0.45	0.77	2.83	6642	426	6	0	0	0	3396	logfile
✔	8KG6	37211	2024-04-10	2023-08-17	3.07	3.71	3.17	3.4	0.004	0.59	0.0	0.04	15.74	0.00	1.954	11.17	1.30	5.1	94.8	0.2	-0.01	0.81	0.81	2.03	3.4	0.003	0.56	1.0	0.04	16.53	0.00	1.928	10.15	1.09	4.7	95.3	0.0	0.22	0.28	0.80	0.82	1.86	70613	8703	27	57	17	0	0	logfile
✔	8Q7Y	18244	2024-04-07	2023-08-17	2.6	2.67	2.58	2.6	0.003	0.69	0.0	0.04	19.41	0.00	2.081	13.77	3.87	5.6	94.4	0.0	-1.10	0.64	0.77	3.25	2.6	0.004	0.71	0.0	0.05	18.98	0.00	2.121	11.93	4.91	7.9	92.1	0.0	-0.91	0.47	0.67	0.83	3.15	10032	1212	4	0	0	0	0	logfile
✔	8Q85	18247	2024-04-07	2023-08-17	3.97	4.11	3.83	3.9	0.004	0.92	0.0	0.05	17.20	0.01	2.146	18.47	0.53	2.9	97.1	0.0	1.93	0.61	0.75	0.67	3.9	0.007	1.04	1.0	0.05	17.52	0.00	2.050	21.05	3.26	2.8	97.2	0.0	3.59	1.16	0.61	0.74	1.11	10299	1436	12	0	0	0	0	logfile
✔	8Q7T	18233	2024-04-07	2023-08-17	3.0	2.38	2.99	3.1	0.011	1.80	0.0	0.09	12.35	0.01	2.480	0.10	0.18	2.4	97.6	0.0	-1.65	0.27	0.65	4.83	2.9	0.005	0.63	0.0	0.05	16.61	0.00	2.043	6.25	2.29	2.7	97.3	0.0	-1.53	1.22	0.34	0.83	4.98	10083	654	9	0	0	0	5136	logfile
✔	8KG8	37213	2024-04-07	2023-08-17	4.23	6.03	4.25	4.2	0.002	0.58	0.0	0.04	14.46	0.00	1.997	13.72	0.01	4.1	95.9	0.0	0.19	0.84	0.78	—	4.2	0.002	0.56	0.0	0.04	14.33	0.00	1.938	16.39	0.03	4.9	95.1	0.0	0.25	1.20	0.86	0.83	—	63829	7950	25	25	17	0	0	logfile
✔	8Q84	18246	2024-04-11	2023-08-17	3.15	3.94	3.45	3.5	0.003	0.74	0.0	0.04	15.74	0.00	2.054	12.03	0.58	2.3	97.6	0.1	3.51	0.69	0.85	0.94	3.5	0.004	0.71	0.0	0.04	16.69	0.00	2.097	13.29	3.10	2.4	97.5	0.1	4.28	0.51	0.67	0.81	0.88	21802	3115	25	0	0	0	0	logfile
✔	8KG9	37215	2024-04-07	2023-08-17	4.52	8.93	5.25	4.5	0.004	0.77	0.0	0.05	14.79	0.00	1.015	36.87	0.74	6.0	93.8	0.3	-0.28	0.88	0.79	—	4.5	0.004	0.70	0.0	0.04	14.84	0.00	1.828	36.32	0.00	6.5	93.3	0.2	-0.53	0.36	0.88	0.77	—	63507	7910	25	23	15	0	0	logfile
✔	8TUG	41623	2024-04-08	2023-08-16	3.5	3.91	3.50	3.4	0.003	0.59	0.0	0.04	15.20	0.01	1.638	7.62	0.12	3.3	96.6	0.1	0.56	0.85	0.77	2.26	3.4	0.003	0.49	0.0	0.04	15.79	0.00	1.941	8.18	0.39	4.2	95.7	0.1	0.48	0.31	0.86	0.80	2.12	65437	3748	22	103	512	0	31001	logfile
✔	8Q7F	18215	2024-04-05	2023-08-16	3.72	2.86	3.58	3.2	0.011	1.88	2.0	0.10	12.87	0.01	2.492	0.00	0.00	1.1	98.9	0.0	-1.74	0.32	0.74	3.87	3.2	0.003	0.68	0.0	0.05	15.64	0.00	2.107	8.23	1.03	0.7	99.3	0.0	-1.47	0.79	0.39	0.81	3.84	3402	450	6	0	0	0	0	logfile
✔	8KFZ	37209	2024-04-06	2023-08-16	3.3	2.30	3.50	1.6	0.004	0.67	0.0	0.04	15.61	0.00	2.206	16.17	0.10	3.7	96.3	0.0	0.79	0.72	0.72	1.74	1.5	0.004	0.92	0.0	0.04	16.39	0.00	1.974	16.51	4.86	3.1	96.9	0.0	0.87	0.32	0.72	0.73	1.57	8966	1139	5	0	0	0	0	logfile
✔	8Q7N	18225	2024-04-06	2023-08-16	3.1	3.00	3.16	2.9	0.004	0.65	0.0	0.04	17.57	0.01	2.007	10.28	0.53	5.5	94.4	0.1	-0.14	0.63	0.81	2.58	2.9	0.003	0.63	1.0	0.04	18.03	0.00	2.037	10.59	1.97	4.9	95.1	0.0	0.76	0.36	0.64	0.83	2.27	55463	6565	21	300	0	0	0	logfile
✔	8Q7L	18219	2024-04-05	2023-08-16	2.82	2.80	2.86	2.9	0.011	1.90	4.0	0.11	11.68	0.01	2.159	2.03	0.00	4.4	95.6	0.0	-2.15	0.34	0.80	5.45	2.9	0.003	0.69	0.0	0.05	16.56	0.00	2.244	5.66	1.03	1.6	98.4	0.0	-2.22	0.81	0.39	0.90	5.11	3375	441	6	0	0	0	0	logfile
✔	8Q7M	18224	2024-04-05	2023-08-16	3.26	3.16	3.21	3.3	0.011	1.96	4.0	0.11	11.70	0.01	2.490	0.38	0.17	3.1	96.9	0.0	-1.88	0.32	0.70	3.84	3.2	0.006	0.76	0.0	0.05	15.05	0.00	2.219	6.33	1.88	1.8	98.2	0.0	-1.83	0.84	0.36	0.87	4.15	5109	669	9	0	0	0	0	logfile
✔	8KFY	37208	2024-04-06	2023-08-16	3.06	2.26	3.16	2.0	0.003	0.64	0.0	0.04	15.91	0.00	2.155	8.49	0.20	1.7	98.3	0.0	1.35	0.78	0.78	2.86	1.9	0.003	0.51	0.0	0.04	16.29	0.00	2.146	8.66	3.44	2.6	97.4	0.0	1.32	0.30	0.78	0.79	2.86	8992	1139	6	0	1	0	0	logfile
✔	8Q7R	18230	2024-04-08	2023-08-16	3.71	2.48	3.70	2.0	0.004	0.74	0.0	0.04	16.37	0.01	1.987	9.49	1.26	8.2	91.8	0.0	-1.10	0.73	0.66	1.76	2.1	0.003	0.64	0.0	0.04	16.71	0.00	2.089	8.91	4.63	7.2	92.8	0.1	-0.49	0.46	0.75	0.71	1.68	12536	1726	10	0	4	0	0	logfile

• ← previous
• Page 29 of 610
• next →