Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8TUG	41623	2024-04-08	2023-08-16	3.5	3.91	3.50	3.4	0.003	0.59	0.0	0.04	15.20	0.01	1.638	7.62	0.12	3.3	96.6	0.1	0.56	0.85	0.77	2.26	3.4	0.003	0.49	0.0	0.04	15.79	0.00	1.941	8.18	0.39	4.2	95.7	0.1	0.48	0.31	0.86	0.80	2.12	65437	3748	22	103	512	0	31001	logfile
✔	8TUP	41628	2024-04-08	2023-08-16	3.3	3.44	3.30	3.4	0.002	0.41	0.0	0.04	14.81	0.00	2.277	4.52	0.00	2.2	97.8	0.0	2.02	0.65	0.78	2.89	3.4	0.005	0.57	0.0	0.04	15.39	0.00	2.208	6.16	2.78	1.6	98.4	0.0	2.36	0.89	0.58	0.80	2.76	12869	1590	12	0	3	66	0	logfile
✔	8Q7R	18230	2024-04-08	2023-08-16	3.71	2.48	3.70	2.0	0.004	0.74	0.0	0.04	16.37	0.01	1.987	9.49	1.26	8.2	91.8	0.0	-1.10	0.73	0.66	1.76	2.1	0.003	0.64	0.0	0.04	16.71	0.00	2.089	8.91	4.63	7.2	92.8	0.1	-0.49	0.46	0.75	0.71	1.68	12536	1726	10	0	4	0	0	logfile
✔	8Q7M	18224	2024-04-05	2023-08-16	3.26	3.16	3.21	3.3	0.011	1.96	4.0	0.11	11.70	0.01	2.490	0.38	0.17	3.1	96.9	0.0	-1.88	0.32	0.70	3.84	3.2	0.006	0.76	0.0	0.05	15.05	0.00	2.219	6.33	1.88	1.8	98.2	0.0	-1.83	0.84	0.36	0.87	4.15	5109	669	9	0	0	0	0	logfile
✔	8Q7N	18225	2024-04-06	2023-08-16	3.1	3.00	3.16	2.9	0.004	0.65	0.0	0.04	17.57	0.01	2.007	10.28	0.53	5.5	94.4	0.1	-0.14	0.63	0.81	2.58	2.9	0.003	0.63	1.0	0.04	18.03	0.00	2.037	10.59	1.97	4.9	95.1	0.0	0.76	0.36	0.64	0.83	2.27	55463	6565	21	300	0	0	0	logfile
✔	8Q7C	18212	2024-04-11	2023-08-16	2.9	4.06	3.13	3.6	0.004	0.54	0.0	0.04	14.30	0.00	2.140	7.64	3.64	3.1	96.9	0.0	-0.10	0.90	0.90	4.16	3.6	0.004	0.59	0.0	0.04	14.71	0.00	2.139	7.78	3.38	3.2	96.8	0.0	0.09	0.23	0.90	0.90	3.90	21348	2670	3	0	0	0	0	logfile
✔	8KFA	37203	2024-04-10	2023-08-15	3.04	3.87	3.20	3.4	0.002	0.48	0.0	0.04	13.59	0.00	2.226	9.28	0.00	2.9	97.1	0.0	-0.20	0.83	0.82	2.55	3.4	0.004	0.58	0.0	0.04	15.03	0.00	2.082	12.75	2.48	3.7	96.3	0.0	-0.38	0.34	0.84	0.85	2.54	18665	2421	9	0	0	0	0	logfile
✔	8Q72	18201	2024-04-12	2023-08-15	4.17	4.49	4.20	4.2	0.004	0.65	0.0	0.04	18.07	0.00	1.906	6.35	0.00	3.5	96.4	0.0	-0.10	0.82	0.74	—	4.2	0.004	0.58	0.0	0.04	17.54	0.00	1.847	10.36	0.00	6.8	93.2	0.0	-0.44	0.39	0.83	0.78	—	84342	4946	20	160	4	0	41352	logfile
✔	8TU9	41620	2024-04-06	2023-08-15	3.26	3.58	3.38	3.6	0.011	1.68	0.0	0.08	14.55	0.02	2.275	2.59	0.00	4.4	95.6	0.0	-0.68	0.66	0.81	2.08	3.6	0.003	0.60	0.0	0.04	15.37	0.00	2.239	4.21	1.89	4.3	95.7	0.0	0.60	0.47	0.63	0.84	2.68	8390	1066	4	0	8	0	0	logfile
✔	8TU6	41617	2024-04-10	2023-08-15	3.12	3.16	3.01	3.2	0.004	0.59	0.0	0.04	16.95	0.00	2.021	5.71	0.88	3.0	97.0	0.0	0.51	0.66	0.78	3.49	3.3	0.004	0.52	0.0	0.04	16.88	0.00	2.087	5.80	2.20	3.0	97.0	0.0	1.21	0.47	0.74	0.83	3.25	20338	1233	2	0	0	0	10170	logfile
✔	8TTW	41613	2024-04-14	2023-08-15	2.96	3.21	3.03	3.3	0.005	1.03	1.0	0.05	19.41	0.00	1.953	31.63	10.42	7.5	91.8	0.7	-2.50	0.69	0.82	2.69	3.3	0.005	0.84	1.0	0.05	17.32	0.01	1.865	10.74	8.51	6.9	92.7	0.4	-1.79	0.35	0.69	0.86	2.60	31275	3744	69	0	162	0	0	logfile
✔	8Q6P	18192	2024-04-09	2023-08-14	3.53	3.92	3.77	3.9	0.002	0.48	0.0	0.04	14.14	0.00	2.234	5.07	0.11	2.4	97.6	0.0	1.50	0.55	0.78	1.46	3.9	0.003	0.63	0.0	0.04	16.46	0.00	2.206	9.43	2.91	3.0	97.0	0.0	1.00	1.00	0.56	0.81	1.41	16794	2104	12	0	5	0	0	logfile
✔	8TTB	41604	2024-04-11	2023-08-13	2.77	3.26	2.76	3.0	0.002	0.42	0.0	0.04	7.77	0.00	1.428	3.70	0.00	1.6	98.4	0.0	1.83	0.83	0.87	5.03	3.0	0.003	0.50	0.0	0.04	11.55	0.00	1.975	4.88	0.41	2.1	97.9	0.0	1.20	1.02	0.84	0.88	4.52	21905	1376	5	0	2	0	10903	logfile
✔	8Q6J	18188	2024-04-07	2023-08-11	3.3	4.21	3.41	3.8	0.007	0.76	0.0	0.05	15.11	0.01	2.029	19.52	5.69	9.6	90.4	0.1	-1.61	0.86	0.75	1.78	3.8	0.008	0.83	0.0	0.05	14.44	0.01	2.076	22.83	4.21	10.1	89.8	0.1	-1.69	1.29	0.87	0.80	1.67	11535	1494	8	0	9	0	0	logfile
✔	8Q63	18183	2024-04-07	2023-08-10	3.68	3.75	3.69	3.8	0.007	1.03	0.0	0.09	18.50	0.00	2.121	12.49	0.09	4.5	95.5	0.0	0.60	0.74	0.73	1.25	3.8	0.003	0.63	0.0	0.04	19.27	0.00	2.147	13.90	2.44	3.8	96.2	0.0	0.66	0.45	0.74	0.74	1.36	11346	1244	6	69	1	0	0	logfile
✔	8KD3	37123	2024-04-13	2023-08-09	2.9	2.96	2.85	3.0	0.004	0.77	1.0	0.04	24.41	0.01	1.281	7.68	0.13	5.1	94.9	0.0	-1.28	0.74	0.66	1.31	3.0	0.004	0.64	0.0	0.04	24.78	0.00	1.949	13.56	3.03	4.5	95.4	0.0	-0.36	0.75	0.84	0.87	2.70	27576	2563	17	328	1	0	0	logfile
✔	8TRN	41584	2024-04-06	2023-08-09	3.0	3.21	3.24	3.2	0.025	2.23	0.0	0.05	20.19	0.00	1.995	4.46	0.64	2.2	97.8	0.0	0.26	0.53	0.91	4.00	3.2	0.002	1.21	0.0	0.04	20.59	0.00	2.033	5.73	1.60	1.0	99.0	0.0	1.27	0.45	0.49	0.89	3.35	8814	1101	6	0	9	0	0	logfile
✔	8KD2	37122	2024-04-12	2023-08-09	3.02	3.13	2.97	3.0	0.004	0.70	0.0	0.04	25.70	0.01	1.457	8.15	0.68	4.3	95.7	0.0	-0.56	0.78	0.74	1.28	3.0	0.006	0.79	1.0	0.04	25.48	0.00	1.993	16.39	4.23	5.2	94.8	0.0	0.03	1.23	0.83	0.84	1.90	24694	2164	16	348	0	0	0	logfile
✔	8KD6	37126	2024-04-13	2023-08-09	3.07	3.13	3.02	2.8	0.004	0.87	2.0	0.05	24.63	0.01	1.891	8.05	0.77	4.5	95.5	0.0	-1.98	0.76	0.71	1.01	3.0	0.004	0.61	0.0	0.04	24.74	0.00	1.750	13.92	3.31	4.8	95.2	0.0	-0.18	1.00	0.83	0.85	1.77	26982	2489	17	328	1	0	0	logfile
✔	8KD5	37125	2024-04-12	2023-08-09	2.9	3.00	3.01	3.0	0.003	0.75	0.0	0.04	24.46	0.01	2.044	8.17	0.54	4.3	95.6	0.1	-1.18	0.76	0.74	1.52	2.9	0.004	0.63	0.0	0.04	24.72	0.00	2.014	13.75	2.79	4.4	95.6	0.0	0.03	0.71	0.83	0.87	2.66	26908	2502	17	319	1	0	0	logfile

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