Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8TP5	41467	2024-04-09	2023-08-04	2.9	3.29	2.95	3.2	0.021	1.86	1.0	0.11	10.61	0.01	2.336	1.75	0.11	1.8	98.2	0.0	1.07	0.76	0.79	3.53	3.2	0.003	0.61	0.0	0.04	15.18	0.00	2.122	7.42	1.54	2.7	97.3	0.0	0.70	0.80	0.78	0.85	3.40	17508	2205	18	0	18	0	0	logfile
✔	8Q3B	18120	2024-04-13	2023-08-03	2.69	3.40	2.70	3.3	0.003	0.56	0.0	0.04	15.89	0.00	1.424	4.67	0.52	2.0	98.0	0.0	0.94	0.79	0.89	3.59	3.2	0.003	0.57	0.0	0.04	16.49	0.00	2.130	7.52	1.51	2.1	97.9	0.0	0.93	0.36	0.67	0.80	3.38	29389	3724	12	0	7	0	0	logfile
✔	8KAE	37008	2024-04-06	2023-08-03	3.18	3.46	3.28	3.5	0.013	1.08	0.0	0.06	13.24	0.01	2.147	7.23	0.00	7.2	92.8	0.0	-1.16	0.61	0.81	3.21	3.5	0.003	0.59	0.0	0.04	14.48	0.00	2.217	5.92	2.53	4.2	95.8	0.0	0.85	1.16	0.62	0.82	2.09	8440	1105	6	0	1	0	0	logfile
✔	8KB5	37070	2024-04-08	2023-08-03	2.26133	2.35	2.23	2.3	0.007	0.98	0.0	0.05	28.08	0.01	2.377	0.00	0.00	0.7	99.3	0.0	2.15	0.79	0.85	3.73	2.3	0.003	0.58	0.0	0.03	28.28	0.00	2.139	4.23	1.43	1.1	98.9	0.0	2.93	0.23	0.78	0.85	3.55	11953	758	10	290	0	0	0	logfile
✔	8ToF	41449	2024-04-13	2023-08-03	2.8	3.39	2.88	3.1	0.010	1.00	3.0	0.04	24.37	0.01	1.828	11.53	3.09	6.6	93.0	0.5	0.08	0.78	0.70	2.65	3.1	0.003	0.66	0.0	0.04	24.22	0.00	2.047	10.64	2.13	5.7	94.1	0.3	0.67	0.46	0.80	0.83	2.31	29102	2689	20	352	15	0	0	logfile
✔	8ToB	41442	2024-04-11	2023-08-03	3.14	3.34	2.61	2.9	0.002	0.45	0.0	0.04	13.68	0.00	2.194	4.63	0.00	3.1	96.9	0.1	0.69	0.78	0.93	4.49	2.9	0.002	0.46	0.0	0.04	14.94	0.00	2.189	5.61	1.26	2.8	97.2	0.0	1.18	0.25	0.78	0.94	4.01	22242	3058	44	0	0	0	0	logfile
✔	8Q30	18119	2024-04-11	2023-08-03	3.22	3.61	3.25	3.5	0.006	0.82	3.0	0.06	13.15	0.01	1.978	8.06	0.45	0.9	99.1	0.0	1.02	0.77	0.89	3.64	3.5	0.003	0.60	0.0	0.05	12.84	0.00	2.223	6.88	1.92	1.3	98.7	0.0	1.76	1.12	0.77	0.90	3.40	77784	10152	288	0	408	0	0	logfile
✔	8KA8	37006	2024-04-06	2023-08-02	2.96	2.36	3.03	2.2	0.003	0.64	0.0	0.04	13.59	0.00	2.017	5.93	0.15	6.2	93.8	0.0	-0.68	0.79	0.79	3.28	2.1	0.004	0.69	0.0	0.04	15.96	0.01	2.144	6.72	2.91	7.5	92.5	0.0	-0.29	0.62	0.81	0.84	3.34	6481	790	5	0	7	0	0	logfile
✔	8Q2J	18109	2024-04-05	2023-08-02	2.23	2.02	2.19	2.2	0.011	1.72	0.0	0.08	11.08	0.01	2.490	0.14	0.00	1.8	98.2	0.0	-1.62	0.29	0.75	7.51	2.2	0.004	0.61	0.0	0.05	17.29	0.00	2.248	4.07	1.50	0.4	99.6	0.0	-1.99	0.90	0.44	0.90	7.16	3507	462	6	0	0	0	0	logfile
✔	8Q2K	18111	2024-04-06	2023-08-02	2.88	2.65	2.79	2.8	0.011	1.80	0.0	0.07	10.49	0.01	2.538	0.43	0.00	4.1	95.9	0.0	-1.81	0.28	0.75	5.37	2.8	0.003	0.51	0.0	0.05	17.02	0.00	2.146	0.85	0.51	0.0	100.0	0.0	-1.78	3.23	0.38	0.85	4.69	7032	450	6	0	0	0	3588	logfile
✔	8Q2L	18112	2024-04-05	2023-08-02	2.2	2.31	2.29	2.3	0.013	2.22	2.0	0.22	14.08	0.01	2.506	1.04	0.00	1.9	98.1	0.0	-2.11	0.40	0.87	5.99	2.3	0.005	0.66	0.0	0.05	19.41	0.00	2.466	3.42	2.38	1.4	98.6	0.0	-1.82	1.25	0.41	0.93	7.18	3300	432	6	0	0	0	0	logfile
✔	8K9T	36997	2024-04-06	2023-08-01	2.66	3.03	2.79	3.0	0.009	1.10	2.0	0.21	16.69	0.01	2.261	6.54	0.97	2.0	97.9	0.1	0.46	0.57	0.79	4.23	3.0	0.003	0.54	0.0	0.04	15.95	0.00	2.284	5.31	0.97	2.0	97.9	0.1	1.06	0.50	0.58	0.82	4.22	7747	965	4	0	9	0	0	logfile
✔	8K9E	36984	2024-04-10	2023-08-01	3.33	3.18	3.23	3.3	0.022	1.56	8.0	0.34	15.77	0.01	1.998	7.39	1.91	4.4	95.6	0.0	1.26	0.72	0.86	2.71	3.3	0.004	0.86	0.0	0.05	16.09	0.00	1.778	6.23	2.30	4.6	95.4	0.0	0.05	1.14	0.74	0.89	2.55	19954	2471	13	0	15	0	0	logfile
✔	8Q27	18070	2024-04-06	2023-08-01	2.02	1.98	1.92	2.0	0.011	1.74	0.0	0.08	11.92	0.01	2.517	0.00	1.27	2.3	97.7	0.0	-1.63	0.21	0.69	8.02	2.0	0.003	0.55	0.0	0.05	15.86	0.00	2.283	1.43	0.00	2.7	97.3	0.0	-1.21	0.87	0.34	0.88	7.45	7002	453	6	0	0	0	3567	logfile
✔	8TN9	41411	2024-04-07	2023-08-01	3.05	3.46	—	3.3	0.003	0.67	0.0	0.05	14.36	0.00	2.022	10.85	0.25	10.0	90.0	0.0	-2.35	0.78	0.78	2.58	3.3	0.003	0.68	0.0	0.05	15.92	0.00	2.153	9.76	2.29	8.8	91.2	0.0	-2.46	0.43	0.78	0.78	2.37	11145	1368	2	0	4	0	0	logfile
✔	8K9G	36986	2024-04-09	2023-08-01	3.49	4.85	3.52	3.8	0.005	0.85	0.0	0.06	21.18	0.01	2.201	10.24	0.25	6.5	93.5	0.0	-1.99	0.77	0.60	0.80	3.9	0.003	0.62	0.0	0.04	20.90	0.00	2.122	17.16	2.22	5.0	95.0	0.0	-0.60	0.65	0.92	0.81	0.79	16759	1811	8	90	0	0	0	logfile
✔	8K9F	36985	2024-04-10	2023-08-01	2.9	2.54	3.15	2.6	0.021	1.53	2.0	0.33	19.34	0.01	1.993	11.68	3.13	6.4	93.6	0.0	-2.90	0.52	0.74	2.54	2.6	0.004	0.93	0.0	0.05	18.95	0.01	1.809	15.98	4.25	5.7	94.3	0.0	-0.60	1.04	0.53	0.77	2.69	19906	2471	13	0	14	0	0	logfile
✔	8K9R	36996	2024-04-06	2023-08-01	2.68	3.02	2.78	3.0	0.009	0.87	0.0	0.15	16.11	0.01	2.233	6.02	1.33	2.7	97.3	0.0	0.54	0.60	0.82	5.22	3.0	0.002	0.53	0.0	0.04	15.45	0.00	2.330	5.23	1.09	1.9	98.1	0.0	1.30	1.01	0.62	0.84	3.85	7684	962	4	0	8	0	0	logfile
✔	8K8J	36951	2024-04-06	2023-07-30	2.88	3.12	—	3.1	0.004	0.61	0.0	0.04	14.02	0.00	2.190	9.34	0.11	5.3	94.7	0.0	0.30	0.66	0.84	3.80	3.1	0.003	0.56	0.0	0.04	16.41	0.00	2.128	8.72	1.80	4.5	95.5	0.0	0.65	0.33	0.65	0.85	3.49	8155	1031	6	0	1	0	0	logfile
✔	8TMA	41382	2024-04-05	2023-07-29	3.2	3.37	3.02	3.3	0.004	0.68	0.0	0.05	12.06	0.01	2.324	3.32	0.00	4.0	95.8	0.2	-1.56	0.79	0.82	3.66	3.3	0.002	0.58	0.0	0.04	14.87	0.00	2.170	5.37	1.69	3.5	96.5	0.0	0.11	1.71	0.80	0.83	3.04	3254	410	3	0	0	0	0	logfile

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