Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8TMA	41382	2024-04-05	2023-07-29	3.2	3.37	3.02	3.3	0.004	0.68	0.0	0.05	12.06	0.01	2.324	3.32	0.00	4.0	95.8	0.2	-1.56	0.79	0.82	3.66	3.3	0.002	0.58	0.0	0.04	14.87	0.00	2.170	5.37	1.69	3.5	96.5	0.0	0.11	1.71	0.80	0.83	3.04	3254	410	3	0	0	0	0	logfile
✔	8Q0N	18056	2024-04-09	2023-07-28	4.2	4.02	3.99	4.1	0.002	0.48	0.0	0.04	13.78	0.00	2.181	5.46	0.00	1.7	98.3	0.0	1.28	0.56	0.43	—	3.9	0.003	0.59	0.0	0.04	14.26	0.00	1.972	11.36	0.00	4.0	96.0	0.0	0.13	1.04	0.69	0.65	—	15917	1009	4	0	2	0	7910	logfile
✔	8TM1	41374	2024-04-05	2023-07-27	2.79	2.95	2.77	3.0	0.003	0.67	0.0	0.05	12.21	0.01	2.313	2.95	0.00	3.4	96.6	0.0	-1.40	0.76	0.81	4.05	2.9	0.003	0.64	0.0	0.04	16.66	0.00	2.215	4.53	3.05	4.9	95.1	0.0	-0.66	1.18	0.79	0.86	3.93	4536	569	4	0	0	0	0	logfile
✔	8TLM	41370	2024-04-06	2023-07-27	2.9	3.41	2.91	3.3	0.003	0.49	0.0	0.04	11.71	0.00	2.057	4.62	0.00	2.8	97.2	0.0	1.36	0.71	0.81	3.76	3.3	0.003	0.60	0.0	0.04	15.24	0.00	2.298	6.10	2.63	2.6	97.4	0.0	1.12	1.03	0.71	0.83	3.39	5400	696	3	0	0	0	0	logfile
✔	8TL0	41358	2024-04-11	2023-07-26	3.1	3.94	3.26	3.7	0.007	0.84	0.0	0.05	13.38	0.01	2.221	5.54	0.04	5.1	94.9	0.0	-1.22	0.80	0.84	2.97	3.7	0.004	0.70	1.0	0.04	14.72	0.00	1.883	9.63	1.71	4.4	95.6	0.0	0.54	0.36	0.78	0.81	2.74	23119	2920	14	21	0	0	0	logfile
✔	8PYS	18031	2024-04-09	2023-07-26	2.7	2.59	2.72	2.7	0.003	0.49	0.0	0.04	12.64	0.00	2.388	8.00	0.00	2.3	97.7	0.0	2.07	0.77	0.86	4.66	2.7	0.003	0.48	0.0	0.04	16.13	0.00	2.138	6.21	1.32	1.3	98.7	0.0	1.76	1.90	0.76	0.87	4.05	122040	15900	60	0	0	0	0	logfile
✔	8TLA	41366	2024-04-10	2023-07-26	3.2	4.35	3.72	3.6	0.002	0.50	0.0	0.03	17.07	0.00	1.957	7.00	0.08	1.4	98.5	0.0	3.35	0.66	0.59	0.77	3.7	0.003	0.58	0.0	0.03	16.58	0.00	1.400	13.49	1.84	2.5	97.5	0.0	2.50	1.00	0.71	0.78	1.14	130418	8014	8	0	16	0	65349	logfile
✔	8TL7	41364	2024-04-13	2023-07-26	4.05	3.05	4.03	2.1	0.003	0.55	0.0	0.04	9.81	0.01	2.066	2.60	0.00	0.7	99.3	0.0	2.73	0.77	0.79	—	1.9	0.002	0.47	0.0	0.03	9.93	0.00	1.972	2.87	0.00	2.1	97.9	0.0	5.42	1.06	0.77	0.79	—	89865	8328	12	0	0	0	39477	logfile
✔	8PS8	17846	2024-04-10	2023-07-26	4.0	3.56	3.98	3.2	0.016	2.11	0.0	0.08	6.12	0.01	2.328	1.40	0.00	6.7	93.1	0.2	-2.93	0.69	0.76	—	3.2	0.003	0.66	0.0	0.04	4.91	0.00	2.163	3.68	0.00	5.8	94.2	0.0	-0.68	0.68	0.67	0.78	—	18674	3788	3	0	0	0	0	logfile
✔	8TL9	41365	2024-04-10	2023-07-26	3.3	4.44	3.76	3.6	0.002	0.52	0.0	0.04	17.37	0.00	1.907	7.57	0.39	1.5	98.5	0.0	3.04	0.65	0.58	0.76	3.8	0.005	0.60	0.0	0.04	16.74	0.00	1.874	14.93	1.86	3.5	96.5	0.0	1.80	1.28	0.71	0.80	0.97	130434	8015	8	0	16	0	65358	logfile
✔	8K7C	36938	2024-04-07	2023-07-26	3.9	4.56	4.09	4.5	0.009	0.96	0.0	0.05	13.87	0.01	1.837	13.49	0.21	8.8	91.2	0.0	-1.19	0.66	0.84	2.01	4.5	0.002	0.61	0.0	0.04	16.18	0.00	1.962	6.13	2.46	4.9	95.1	0.0	0.50	0.45	0.63	0.82	1.43	9271	1174	4	0	6	0	0	logfile
✔	8K6L	36922	2024-04-05	2023-07-25	2.92	3.27	2.96	3.2	0.005	1.00	1.0	0.09	17.75	0.02	2.297	6.71	2.17	5.0	95.0	0.0	-2.44	0.63	0.80	2.79	3.2	0.003	0.58	0.0	0.05	15.19	0.00	2.187	2.56	1.69	3.2	96.8	0.0	1.55	0.58	0.60	0.81	2.97	4155	547	3	0	4	0	0	logfile
✔	8K69	36919	2024-04-06	2023-07-25	2.33	2.41	2.31	2.4	0.007	0.94	0.0	0.06	17.64	0.01	2.040	9.84	5.85	2.9	96.9	0.2	0.30	0.57	0.77	5.61	2.4	0.002	0.53	0.0	0.04	15.84	0.00	2.207	3.64	1.78	3.1	96.9	0.0	2.76	0.32	0.75	0.90	5.44	7744	916	6	0	18	126	0	logfile
✔	8K66	36918	2024-04-06	2023-07-25	2.53	2.66	2.51	2.7	0.006	1.05	0.0	0.20	19.61	0.00	1.997	8.02	3.20	1.6	98.4	0.0	-0.42	0.77	0.89	4.68	2.7	0.002	0.53	0.0	0.04	15.62	0.00	2.191	5.50	1.28	2.3	97.7	0.0	2.51	1.14	0.72	0.89	4.91	7620	886	6	0	16	130	0	logfile
✔	8TJU	41311	2024-04-07	2023-07-24	3.46	4.75	3.48	3.4	0.006	0.67	0.0	0.04	25.59	0.01	1.874	27.33	0.00	0.0	0.0	0.0	—	0.93	0.86	—	3.4	0.008	0.70	0.0	0.04	24.91	0.01	1.784	28.62	0.00	0.0	0.0	0.0	—	0.32	0.94	0.91	—	8771	0	2	409	27	0	0	logfile
✔	8TJV	41312	2024-04-07	2023-07-24	2.99	3.53	2.99	3.1	0.006	0.61	0.0	0.04	24.19	0.00	1.526	10.47	0.00	0.0	0.0	0.0	—	0.91	0.89	—	3.1	0.008	0.70	0.0	0.04	23.53	0.01	1.086	12.37	0.00	0.0	0.0	0.0	—	0.88	0.92	0.92	—	8778	0	2	409	32	0	0	logfile
✔	8TJX	41313	2024-04-06	2023-07-24	2.44	3.10	2.65	2.9	0.006	0.64	0.0	0.04	24.81	0.01	1.872	12.24	0.00	0.0	0.0	0.0	—	0.85	0.85	—	2.9	0.007	0.61	0.0	0.04	24.05	0.01	1.838	11.47	0.00	0.0	0.0	0.0	—	0.81	0.84	0.86	—	7839	0	2	365	27	0	0	logfile
✔	8TJQ	41308	2024-04-07	2023-07-24	3.4	4.09	3.45	3.4	0.005	0.63	0.0	0.03	24.84	0.00	1.883	19.77	0.00	0.0	0.0	0.0	—	0.90	0.85	—	3.4	0.008	0.76	0.0	0.04	24.61	0.01	1.817	25.57	0.00	0.0	0.0	0.0	—	0.19	0.92	0.90	—	9296	0	2	433	28	0	0	logfile
✔	8K5P	36908	2024-04-17	2023-07-23	2.8	3.48	2.88	3.2	0.002	0.56	0.0	0.04	18.20	0.00	2.104	8.46	2.24	4.5	95.5	0.0	0.74	0.81	0.82	1.68	3.2	0.004	0.64	0.0	0.04	18.52	0.00	2.029	10.00	2.76	5.3	94.6	0.0	0.32	0.48	0.81	0.84	2.15	42713	5127	26	96	11	0	0	logfile
✔	8K5G	36905	2024-04-05	2023-07-21	3.41	3.86	3.38	3.7	0.003	0.65	0.0	0.04	13.67	0.00	2.235	6.18	0.00	8.0	91.8	0.2	-2.07	0.68	0.85	2.82	3.7	0.003	0.66	0.0	0.04	15.34	0.00	2.229	6.48	3.00	7.1	92.7	0.2	-1.49	1.45	0.64	0.86	2.61	3381	431	3	0	0	0	0	logfile

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