Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8K5D	36902	2024-04-05	2023-07-21	3.74	3.93	3.66	3.9	0.007	0.76	0.0	0.04	19.08	0.00	2.203	11.34	0.40	5.9	94.1	0.0	0.46	0.52	0.79	2.10	3.9	0.003	0.63	0.0	0.04	19.70	0.00	2.141	10.06	6.48	6.2	93.8	0.0	0.57	0.23	0.52	0.79	1.68	2345	291	2	0	1	0	0	logfile
✔	8K5H	36906	2024-04-13	2023-07-21	3.22	3.62	3.18	3.4	0.012	0.97	0.0	0.06	16.11	0.01	1.977	13.89	0.14	8.9	91.1	0.0	-1.87	0.84	0.84	2.15	3.4	0.003	0.61	0.0	0.04	16.25	0.00	2.152	7.88	2.27	4.7	95.3	0.0	-0.44	0.51	0.85	0.88	1.96	25502	3171	16	0	50	0	0	logfile
✔	8K5C	36901	2024-04-05	2023-07-21	3.13	3.33	3.05	3.3	0.003	0.63	0.0	0.04	17.07	0.01	2.341	8.34	0.78	4.2	95.8	0.0	0.59	0.50	0.78	1.82	3.3	0.004	0.60	0.0	0.04	17.23	0.01	2.280	8.13	4.26	5.5	94.5	0.0	0.46	1.78	0.50	0.78	2.39	2380	291	2	0	1	0	0	logfile
✔	8K5G	36905	2024-04-05	2023-07-21	3.41	3.86	3.38	3.7	0.003	0.65	0.0	0.04	13.67	0.00	2.235	6.18	0.00	8.0	91.8	0.2	-2.07	0.68	0.85	2.82	3.7	0.003	0.66	0.0	0.04	15.34	0.00	2.229	6.48	3.00	7.1	92.7	0.2	-1.49	1.45	0.64	0.86	2.61	3381	431	3	0	0	0	0	logfile
✔	8K53	36896	2024-04-07	2023-07-21	3.8	3.95	3.74	3.9	0.003	0.63	0.0	0.05	15.22	0.00	2.149	6.63	0.18	4.8	95.1	0.1	0.04	0.73	0.71	1.11	3.9	0.003	0.60	0.0	0.04	14.76	0.00	2.233	7.01	3.28	5.0	94.9	0.1	0.28	0.98	0.73	0.71	1.08	10602	1350	8	0	12	0	0	logfile
✔	8TJ2	41298	2024-04-05	2023-07-20	3.0	3.23	3.05	3.2	0.006	0.79	0.0	0.05	13.71	0.01	1.823	8.53	1.67	3.5	96.5	0.0	-1.17	0.63	0.84	3.97	3.2	0.004	0.66	0.0	0.04	14.64	0.00	1.864	6.86	2.24	5.4	94.6	0.0	-0.81	0.46	0.62	0.84	3.37	54252	3744	18	0	0	0	26460	logfile
✔	8TJ3	41299	2024-04-08	2023-07-20	3.2	3.62	—	3.4	0.004	0.72	0.0	0.04	13.85	0.02	2.416	10.13	1.16	7.4	92.4	0.1	0.15	0.73	0.58	0.54	3.4	0.003	0.63	0.0	0.04	15.45	0.00	1.972	16.38	0.72	7.6	92.4	0.0	0.56	1.87	0.79	0.76	1.68	13127	833	2	0	0	0	6652	logfile
✔	8K4N	36887	2024-04-09	2023-07-20	2.83	3.28	3.03	3.2	0.009	0.69	0.0	0.05	14.41	0.01	1.906	5.13	0.00	9.0	91.0	0.0	-4.19	0.69	0.83	3.61	3.2	0.003	0.57	0.0	0.04	15.72	0.00	2.000	5.48	2.08	4.6	95.4	0.0	-1.18	0.67	0.62	0.85	2.94	17167	1117	6	0	1	0	8511	logfile
✔	8PWH	17993	2024-04-07	2023-07-20	3.17	3.98	—	3.7	0.004	0.64	0.0	0.05	14.69	0.00	2.087	15.50	4.29	7.5	92.4	0.1	-1.53	0.84	0.76	2.00	3.7	0.005	0.69	0.0	0.05	14.24	0.00	2.117	15.85	3.74	8.0	91.9	0.1	-1.37	0.57	0.84	0.77	1.84	11535	1494	8	0	9	0	0	logfile
✔	8TiF	41286	2024-04-05	2023-07-19	3.89	3.95	3.71	4.1	0.005	0.55	0.0	0.04	17.04	0.00	2.317	8.78	1.02	1.6	98.4	0.0	0.15	0.23	0.85	1.30	4.1	0.002	0.42	0.0	0.04	16.97	0.00	2.337	4.94	2.04	1.6	98.4	0.0	0.98	0.36	0.22	0.85	3.19	889	131	1	0	0	0	0	logfile
✔	8TiB	41283	2024-04-05	2023-07-19	3.47	3.73	3.31	3.7	0.003	0.62	0.0	0.05	16.69	0.00	2.328	7.86	0.34	6.2	93.8	0.0	-1.60	0.32	0.87	1.51	3.7	0.002	0.47	0.0	0.04	16.66	0.00	2.289	5.67	5.10	5.7	94.1	0.3	-0.88	0.28	0.32	0.87	1.53	2667	393	3	0	0	0	0	logfile
✔	8THU	41272	2024-04-07	2023-07-18	3.1	3.86	3.08	3.2	0.004	0.68	0.0	0.04	28.56	0.01	1.528	5.35	0.00	2.2	97.8	0.0	1.40	0.93	0.89	2.77	3.2	0.003	0.56	0.0	0.03	28.34	0.00	2.226	8.63	1.78	2.3	97.7	0.0	2.76	0.27	0.93	0.90	1.90	11902	760	10	291	0	0	0	logfile
✔	8PVV	17973	2024-04-06	2023-07-18	2.81	3.06	2.84	3.0	0.004	0.63	0.0	0.05	18.01	0.01	1.707	10.54	0.33	2.6	97.4	0.0	0.55	0.79	0.81	3.73	3.0	0.004	0.58	0.0	0.04	18.86	0.00	1.887	14.08	2.31	2.1	97.9	0.0	0.84	1.60	0.80	0.82	3.10	6477	656	9	50	1	36	0	logfile
✔	8K3X	36864	2024-04-07	2023-07-17	2.86	3.04	2.99	3.1	0.012	0.94	0.0	0.06	12.85	0.01	2.196	4.37	0.20	5.2	94.8	0.0	-0.82	0.56	0.78	2.78	3.0	0.005	0.59	0.0	0.04	15.06	0.00	2.201	4.53	2.39	3.4	96.6	0.0	1.23	1.22	0.57	0.81	2.83	10386	1386	4	0	2	0	0	logfile
✔	8PVH	17966	2024-04-09	2023-07-17	2.9	2.53	2.93	3.0	0.010	1.69	0.0	0.08	15.36	0.01	2.437	0.56	1.49	2.0	97.8	0.2	-1.08	0.53	0.78	4.67	2.9	0.003	0.57	0.0	0.04	17.52	0.00	2.269	8.02	2.79	2.4	97.6	0.0	1.27	1.03	0.68	0.84	4.21	15172	1972	8	0	4	0	0	logfile
✔	8K3Y	36867	2024-04-15	2023-07-17	4.42	8.76	4.94	4.5	0.006	1.15	0.0	0.07	14.64	0.01	2.232	17.66	0.05	6.9	93.1	0.0	-3.10	0.86	0.60	—	4.5	0.003	0.75	0.0	0.05	14.30	0.01	1.984	34.76	0.00	7.5	92.5	0.0	-1.58	0.45	0.89	0.72	—	34589	4396	10	0	4	0	0	logfile
✔	8K45	36877	2024-04-12	2023-07-17	3.66	4.22	3.69	3.9	0.005	0.71	1.0	0.05	17.55	0.01	1.989	10.32	2.13	7.1	92.4	0.5	-0.91	0.84	0.86	1.55	3.9	0.003	0.58	0.0	0.04	17.01	0.00	2.032	9.49	3.95	5.3	94.6	0.2	-0.51	0.32	0.84	0.85	1.58	26877	3338	18	0	48	0	0	logfile
✔	8K3T	36859	2024-04-07	2023-07-17	3.57	4.21	3.75	4.1	0.009	0.93	0.0	0.05	15.00	0.00	2.225	12.40	1.12	4.5	95.5	0.0	0.41	0.60	0.77	1.00	4.1	0.004	0.56	0.0	0.04	15.82	0.00	2.141	9.58	2.35	3.4	96.6	0.0	1.20	1.19	0.59	0.77	0.59	9410	1254	4	2	6	0	0	logfile
✔	8K3V	36862	2024-04-07	2023-07-17	3.1	3.38	3.15	3.3	0.008	1.07	2.0	0.07	17.59	0.01	2.227	8.20	4.91	5.4	94.6	0.0	-0.31	0.65	0.81	3.01	3.3	0.003	0.51	0.0	0.04	15.65	0.00	2.263	5.46	1.44	2.7	97.3	0.0	1.86	0.51	0.65	0.83	3.02	11248	1400	4	0	6	0	0	logfile
✔	8PVA	17959	2024-04-14	2023-07-17	4.5	3.88	4.43	3.6	0.011	1.59	4.0	0.10	22.96	0.02	1.936	1.56	3.61	3.6	96.2	0.2	-1.53	0.82	0.74	—	3.6	0.004	0.72	0.0	0.04	22.84	0.01	1.988	19.12	0.07	6.0	93.9	0.1	-1.04	4.19	0.85	0.81	—	141565	5585	58	4555	4	0	0	logfile

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