Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8PVA	17959	2024-04-14	2023-07-17	4.5	3.88	4.43	3.6	0.011	1.59	4.0	0.10	22.96	0.02	1.936	1.56	3.61	3.6	96.2	0.2	-1.53	0.82	0.74	—	3.6	0.004	0.72	0.0	0.04	22.84	0.01	1.988	19.12	0.07	6.0	93.9	0.1	-1.04	4.19	0.85	0.81	—	141565	5585	58	4555	4	0	0	logfile
✔	8K3Y	36867	2024-04-15	2023-07-17	4.42	8.76	4.94	4.5	0.006	1.15	0.0	0.07	14.64	0.01	2.232	17.66	0.05	6.9	93.1	0.0	-3.10	0.86	0.60	—	4.5	0.003	0.75	0.0	0.05	14.30	0.01	1.984	34.76	0.00	7.5	92.5	0.0	-1.58	0.45	0.89	0.72	—	34589	4396	10	0	4	0	0	logfile
✔	8PUW	17949	2024-04-07	2023-07-17	3.01	3.27	3.01	3.2	0.004	0.69	0.0	0.04	12.23	0.01	2.276	3.16	0.00	1.6	98.4	0.0	0.73	0.85	0.88	3.21	3.2	0.004	0.55	0.0	0.04	13.18	0.00	2.190	5.41	1.01	1.6	98.4	0.0	2.18	0.26	0.87	0.90	2.89	11160	1442	4	0	0	0	0	logfile
✔	8THR	41269	2024-04-05	2023-07-17	3.12	2.56	3.14	3.6	0.013	1.92	1.0	0.11	14.13	0.01	2.537	4.34	0.96	2.1	97.9	0.0	-3.14	0.77	0.75	2.62	3.6	0.004	0.82	0.0	0.04	15.39	0.01	2.091	12.87	1.92	3.4	96.6	0.0	-1.36	0.89	0.76	0.74	1.48	2937	389	2	0	1	0	0	logfile
✔	8PVH	17966	2024-04-09	2023-07-17	2.9	2.53	2.93	3.0	0.010	1.69	0.0	0.08	15.36	0.01	2.437	0.56	1.49	2.0	97.8	0.2	-1.08	0.53	0.78	4.67	2.9	0.003	0.57	0.0	0.04	17.52	0.00	2.269	8.02	2.79	2.4	97.6	0.0	1.27	1.03	0.68	0.84	4.21	15172	1972	8	0	4	0	0	logfile
✔	8K45	36877	2024-04-12	2023-07-17	3.66	4.22	3.69	3.9	0.005	0.71	1.0	0.05	17.55	0.01	1.989	10.32	2.13	7.1	92.4	0.5	-0.91	0.84	0.86	1.55	3.9	0.003	0.58	0.0	0.04	17.01	0.00	2.032	9.49	3.95	5.3	94.6	0.2	-0.51	0.32	0.84	0.85	1.58	26877	3338	18	0	48	0	0	logfile
✔	8PVB	17960	2024-04-10	2023-07-17	3.6	3.05	3.14	3.2	0.010	1.70	0.0	0.09	16.05	0.01	0.000	1.17	1.27	1.6	98.4	0.0	-0.14	0.60	0.79	4.63	3.2	0.004	0.61	0.0	0.04	15.10	0.00	0.000	6.41	1.77	1.2	98.8	0.0	0.62	1.00	0.73	0.84	3.89	19225	2275	25	0	80	0	0	logfile
✔	8K44	36872	2024-04-05	2023-07-17	3.8	4.00	3.81	3.9	0.003	0.53	0.0	0.04	10.43	0.00	2.227	14.98	0.41	1.8	98.2	0.0	0.62	0.65	0.80	2.30	3.9	0.003	0.74	0.0	0.04	14.71	0.00	2.080	14.13	5.23	1.2	98.8	0.0	-0.01	0.65	0.65	0.80	1.97	6360	840	3	0	0	0	0	logfile
✔	8K47	36879	2024-04-12	2023-07-17	3.54	4.06	3.41	3.7	0.006	0.91	2.0	0.07	19.11	0.02	2.184	17.62	5.01	9.4	89.0	1.5	-2.01	0.83	0.81	1.32	3.7	0.003	0.65	0.0	0.04	17.17	0.00	2.160	14.06	3.25	8.2	91.6	0.2	-1.52	2.50	0.84	0.83	1.43	26919	3379	20	0	50	0	0	logfile
✔	8PVG	17965	2024-04-16	2023-07-17	3.4	3.70	3.66	3.6	0.009	1.54	12.0	0.08	14.00	0.01	2.147	5.76	1.10	4.6	95.4	0.0	-0.95	0.80	0.84	3.52	3.6	0.003	0.65	0.0	0.04	15.73	0.00	2.181	10.09	1.08	3.6	96.4	0.0	1.29	1.69	0.87	0.89	2.53	40728	5220	12	0	0	0	0	logfile
✔	8K3V	36862	2024-04-07	2023-07-17	3.1	3.38	3.15	3.3	0.008	1.07	2.0	0.07	17.59	0.01	2.227	8.20	4.91	5.4	94.6	0.0	-0.31	0.65	0.81	3.01	3.3	0.003	0.51	0.0	0.04	15.65	0.00	2.263	5.46	1.44	2.7	97.3	0.0	1.86	0.51	0.65	0.83	3.02	11248	1400	4	0	6	0	0	logfile
✔	8K3S	36858	2024-04-09	2023-07-16	3.0	3.13	2.98	3.1	0.004	0.76	0.0	0.04	14.32	0.01	1.671	12.52	0.77	6.3	93.5	0.2	-0.59	0.67	0.82	2.53	3.1	0.008	0.75	1.0	0.04	16.31	0.01	1.673	7.97	1.90	7.0	93.0	0.1	-0.24	0.52	0.67	0.85	2.46	15761	1864	8	0	17	0	0	logfile
✔	8K3Q	36856	2024-04-07	2023-07-16	2.6	2.98	2.74	2.9	0.008	0.87	0.0	0.05	14.74	0.01	2.259	4.57	1.89	3.4	96.6	0.0	0.38	0.66	0.82	3.35	2.9	0.003	0.49	0.0	0.04	15.93	0.00	2.275	4.48	1.37	2.5	97.5	0.0	1.65	1.19	0.66	0.83	3.43	11365	1448	4	0	2	0	0	logfile
✔	8K3R	36857	2024-04-07	2023-07-16	3.51	4.07	3.61	3.9	0.008	0.86	0.0	0.05	14.85	0.01	2.259	4.36	1.92	2.8	97.2	0.0	0.53	0.61	0.73	1.12	3.9	0.003	0.60	0.0	0.04	16.10	0.00	2.254	7.88	0.96	3.1	96.9	0.0	1.41	0.83	0.60	0.77	0.71	11061	1404	4	0	2	0	0	logfile
✔	8THJ	41266	2024-04-07	2023-07-16	2.99	3.55	3.03	3.4	0.003	0.52	0.0	0.04	14.89	0.00	1.983	5.25	0.88	2.6	97.4	0.0	2.86	0.76	0.87	3.55	3.4	0.003	0.58	0.0	0.04	15.56	0.00	2.132	4.39	1.46	2.3	97.7	0.0	2.12	0.81	0.74	0.86	3.34	9642	1230	4	0	8	0	0	logfile
✔	8K3P	36855	2024-04-07	2023-07-16	3.64	4.09	3.71	4.0	0.010	0.93	0.0	0.06	15.19	0.00	2.293	9.47	3.22	4.5	95.5	0.0	0.23	0.64	0.79	1.60	4.0	0.002	0.51	0.0	0.04	15.63	0.00	2.207	6.37	2.68	2.3	97.7	0.0	2.15	1.24	0.64	0.81	1.92	9906	1320	4	0	4	0	0	logfile
✔	8THi	41265	2024-04-07	2023-07-16	3.36	3.84	3.37	3.7	0.003	0.51	0.0	0.04	13.99	0.00	2.209	3.02	0.29	1.8	98.2	0.0	2.97	0.71	0.80	1.36	3.7	0.002	0.58	0.0	0.04	15.25	0.00	2.154	6.14	1.38	1.9	98.1	0.0	2.30	1.12	0.72	0.85	1.70	9519	1224	4	0	4	0	0	logfile
✔	8THE	41255	2024-04-06	2023-07-15	2.5	2.63	2.50	2.6	0.006	0.79	0.0	0.06	14.88	0.01	2.076	5.10	0.64	1.8	98.2	0.0	1.14	0.74	0.87	5.45	2.6	0.003	0.59	0.0	0.05	16.49	0.00	2.173	3.88	3.32	2.1	97.9	0.0	0.89	1.13	0.74	0.88	4.93	7682	946	6	0	2	81	0	logfile
✔	8PTW	17879	2024-04-08	2023-07-15	2.91	3.20	2.93	3.1	0.004	0.78	0.0	0.05	11.31	0.01	2.299	3.99	0.00	1.8	98.2	0.0	0.35	0.78	0.81	3.44	3.1	0.004	0.59	0.0	0.04	13.74	0.01	2.169	7.21	0.95	1.6	98.4	0.0	2.05	0.35	0.79	0.84	2.79	14242	1878	4	0	0	0	0	logfile
✔	8PTH	17871	2024-04-10	2023-07-14	2.73	2.59	2.66	2.8	0.002	0.44	0.0	0.04	17.86	0.00	2.072	3.02	1.88	4.8	95.2	0.0	0.96	0.74	0.89	3.83	2.8	0.002	0.46	0.0	0.04	17.83	0.00	2.082	3.07	1.67	4.7	95.3	0.0	0.90	0.89	0.73	0.89	3.88	18236	1104	7	27	1	1	8991	logfile

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