Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8K34	36843	2024-04-06	2023-07-14	2.81	3.42	2.84	3.2	0.004	0.74	0.0	0.04	17.75	0.00	2.000	16.66	2.07	3.9	96.1	0.0	-0.23	0.68	0.68	1.79	3.2	0.004	0.69	0.0	0.04	17.99	0.00	1.971	17.36	3.75	5.1	94.9	0.0	-0.21	0.38	0.69	0.69	1.48	7187	863	4	4	1	0	0	logfile
✔	8PTH	17871	2024-04-10	2023-07-14	2.73	2.59	2.66	2.8	0.002	0.44	0.0	0.04	17.86	0.00	2.072	3.02	1.88	4.8	95.2	0.0	0.96	0.74	0.89	3.83	2.8	0.002	0.46	0.0	0.04	17.83	0.00	2.082	3.07	1.67	4.7	95.3	0.0	0.90	0.89	0.73	0.89	3.88	18236	1104	7	27	1	1	8991	logfile
✔	8K36	36845	2024-04-08	2023-07-14	3.48	3.55	3.15	3.6	0.008	0.81	0.0	0.06	12.36	0.00	2.254	3.21	0.80	1.8	98.2	0.0	-0.90	0.72	0.88	3.78	3.6	0.003	0.55	0.0	0.04	14.63	0.00	2.183	3.71	5.07	1.1	98.9	0.0	-0.75	0.54	0.71	0.90	3.08	14172	1848	12	0	0	0	0	logfile
✔	8K39	36848	2024-04-09	2023-07-14	4.0	3.96	3.71	3.9	0.005	0.69	7.0	0.05	14.31	0.01	2.196	7.53	0.24	5.7	94.0	0.3	-0.79	0.61	0.85	—	3.9	0.004	0.62	0.0	0.04	16.45	0.00	2.125	8.65	3.33	6.2	93.7	0.1	-0.84	0.33	0.62	0.85	—	124618	15849	42	0	0	0	0	logfile
✔	8PTJ	17872	2024-04-09	2023-07-14	2.86	2.81	2.75	2.9	0.004	0.48	0.0	0.04	17.88	0.00	2.035	3.52	2.82	4.5	95.5	0.0	1.19	0.76	0.89	3.52	2.8	0.003	0.48	0.0	0.04	17.84	0.00	2.071	3.74	2.82	5.0	95.0	0.0	1.23	0.90	0.75	0.90	3.39	17874	1102	7	15	1	2	8841	logfile
✔	8K37	36846	2024-04-10	2023-07-14	3.5	3.55	3.46	3.6	0.006	0.69	4.0	0.05	13.20	0.00	2.224	5.93	0.41	2.4	97.6	0.0	-0.80	0.70	0.85	2.95	3.5	0.002	0.58	0.0	0.04	15.50	0.00	2.227	6.04	3.12	1.9	98.0	0.0	-0.47	0.54	0.70	0.85	2.30	18528	2394	18	0	0	0	0	logfile
✔	8PT7	17869	2024-04-09	2023-07-13	2.8	2.94	2.75	2.9	0.002	0.44	0.0	0.03	18.02	0.00	1.778	3.66	1.29	2.4	97.5	0.1	1.49	0.79	0.90	3.63	2.8	0.003	0.46	0.0	0.04	17.68	0.00	1.837	3.71	1.94	2.4	97.6	0.0	1.48	0.30	0.78	0.90	3.75	17722	1071	7	29	2	0	8690	logfile
✔	8PSP	17859	2024-04-13	2023-07-13	2.9	2.48	2.81	2.8	0.013	1.86	4.0	0.09	14.80	0.01	2.135	2.92	0.89	5.5	94.1	0.3	-3.17	0.65	0.88	3.89	2.8	0.003	0.57	0.0	0.04	16.07	0.00	2.139	6.08	1.14	2.4	97.6	0.0	1.08	0.41	0.64	0.87	3.27	29695	3788	5	0	2	0	0	logfile
✔	8PSK	17854	2024-04-13	2023-07-13	2.8	2.38	2.78	2.8	0.013	1.82	0.0	0.09	14.46	0.01	2.142	3.31	0.25	4.5	95.2	0.3	-2.78	0.65	0.88	4.06	2.7	0.003	0.56	0.0	0.04	16.18	0.00	2.090	6.97	1.39	2.6	97.4	0.1	0.76	0.41	0.64	0.86	3.61	29604	3776	4	0	1	0	0	logfile
✔	8PSZ	17865	2024-04-11	2023-07-13	2.42	2.18	2.38	2.4	0.005	0.53	0.0	0.04	17.94	0.01	1.869	2.48	2.06	4.3	95.7	0.0	0.91	0.79	0.89	4.82	2.4	0.002	0.47	0.0	0.04	17.51	0.00	1.801	2.35	0.94	3.6	96.4	0.0	1.15	0.52	0.73	0.89	5.00	23098	1355	16	53	6	109	11195	logfile
✔	8PSA	17848	2024-04-13	2023-07-13	3.6	3.18	3.57	3.3	0.014	1.91	0.0	0.09	15.24	0.01	2.170	5.97	0.74	7.9	91.5	0.6	-3.68	0.71	0.83	2.38	2.9	0.003	0.62	0.0	0.04	16.33	0.00	2.151	11.89	1.75	3.3	96.7	0.0	0.14	0.45	0.71	0.81	2.21	29681	3788	4	0	1	0	0	logfile
✔	8PSN	17857	2024-04-11	2023-07-13	2.73	2.54	2.70	2.6	0.003	0.57	1.0	0.04	18.65	0.00	1.671	3.50	2.57	2.1	97.8	0.1	1.12	0.74	0.87	4.16	2.6	0.003	0.50	0.0	0.04	18.38	0.00	1.836	3.50	2.48	2.1	97.8	0.1	0.84	0.26	0.74	0.88	4.42	22266	1361	12	28	6	2	10965	logfile
✔	8PSQ	17860	2024-04-09	2023-07-13	2.65	2.51	2.61	2.6	0.003	0.47	0.0	0.04	18.19	0.00	1.928	2.79	1.19	2.0	97.9	0.1	1.30	0.73	0.89	3.82	2.6	0.003	0.51	0.0	0.04	18.04	0.00	2.007	3.23	2.03	2.2	97.8	0.0	1.36	0.28	0.72	0.89	4.27	16079	969	7	28	2	1	7898	logfile
✔	8PSX	17864	2024-04-11	2023-07-13	2.96	2.64	2.80	2.7	0.005	0.55	0.0	0.04	17.82	0.00	1.879	3.35	1.71	4.3	95.7	0.0	0.82	0.69	0.84	3.85	2.7	0.002	0.47	0.0	0.04	17.65	0.00	1.939	3.30	1.71	4.2	95.8	0.0	0.84	0.90	0.69	0.84	3.77	22403	1356	9	34	6	0	11003	logfile
✔	8PT6	17868	2024-04-10	2023-07-13	3.03	2.81	2.82	2.9	0.003	0.55	0.0	0.04	18.46	0.00	1.826	5.57	2.43	3.7	96.2	0.1	1.06	0.74	0.84	3.10	2.9	0.002	0.48	0.0	0.04	17.94	0.00	1.852	5.48	2.24	3.6	96.4	0.1	1.00	0.36	0.75	0.85	3.07	20436	1242	10	28	6	0	10051	logfile
✔	8PS2	17843	2024-04-13	2023-07-13	2.9	2.43	2.87	2.8	0.013	1.84	1.0	0.09	14.95	0.01	2.288	2.27	0.37	4.8	95.0	0.3	-2.78	0.72	0.89	4.44	2.8	0.003	0.55	0.0	0.04	16.48	0.00	2.151	6.63	1.57	2.1	97.9	0.0	1.06	0.41	0.71	0.88	3.63	29761	3788	5	0	3	0	0	logfile
✔	8PSL	17855	2024-04-13	2023-07-13	3.7	3.61	3.56	3.5	0.014	1.89	0.0	0.09	14.72	0.01	2.124	4.80	0.22	7.3	92.2	0.5	-3.55	0.71	0.85	2.18	3.4	0.003	0.60	0.0	0.04	15.94	0.00	2.083	10.60	1.85	4.0	96.0	0.0	0.46	1.13	0.71	0.83	1.97	29610	3777	4	0	1	0	0	logfile
✔	8PSF	17851	2024-04-13	2023-07-13	2.8	3.32	2.81	2.9	0.013	1.85	0.0	0.09	14.52	0.01	2.200	3.01	0.71	4.7	95.0	0.3	-3.14	0.78	0.90	4.34	3.0	0.003	0.57	0.0	0.04	15.25	0.00	1.370	6.03	0.96	2.4	97.6	0.0	1.37	1.15	0.77	0.90	3.41	29204	3776	5	0	2	0	0	logfile
✔	8PSU	17862	2024-04-09	2023-07-13	3.18	2.77	3.14	3.1	0.003	0.45	0.0	0.03	17.34	0.00	1.917	3.46	0.00	2.2	97.6	0.2	1.54	0.71	0.82	3.55	3.1	0.002	0.46	0.0	0.03	17.31	0.00	1.916	3.59	0.95	2.3	97.5	0.2	1.57	1.12	0.72	0.83	3.36	16169	971	6	29	1	0	7957	logfile
✔	8PS9	17847	2024-04-13	2023-07-13	2.9	2.54	2.90	2.8	0.013	1.86	0.0	0.09	14.57	0.01	2.131	2.78	0.37	4.9	94.8	0.2	-2.87	0.65	0.89	4.41	2.8	0.004	0.59	0.0	0.04	15.92	0.00	2.102	7.00	1.08	2.5	97.5	0.0	1.10	1.13	0.65	0.87	3.73	29735	3788	4	0	2	0	0	logfile

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