Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8PSM	17856	2024-04-13	2023-07-13	3.1	3.17	2.97	3.1	0.014	1.88	0.0	0.09	15.08	0.01	2.097	2.97	0.55	6.4	93.1	0.5	-3.52	0.73	0.90	3.82	3.1	0.003	0.55	0.0	0.04	15.67	0.00	2.173	5.64	0.83	2.6	97.4	0.0	1.23	1.53	0.73	0.89	3.44	29625	3776	5	0	2	0	0	logfile
✔	8PT2	17866	2024-04-11	2023-07-13	2.59	2.37	2.57	2.6	0.002	0.45	0.0	0.04	17.64	0.00	1.885	2.40	1.37	3.6	96.4	0.0	1.25	0.74	0.88	4.57	2.6	0.002	0.47	0.0	0.04	17.63	0.00	1.914	2.31	1.63	3.6	96.4	0.0	1.30	0.26	0.74	0.89	4.58	22091	1355	8	27	3	1	10901	logfile
✔	8PSG	17852	2024-04-13	2023-07-13	3.7	3.67	3.55	3.3	0.014	1.89	0.0	0.09	14.86	0.01	2.169	5.38	0.65	7.3	92.4	0.3	-3.71	0.73	0.84	2.35	3.3	0.003	0.60	0.0	0.04	15.80	0.00	2.115	10.68	1.63	3.1	96.9	0.0	0.41	1.13	0.73	0.83	2.14	29610	3777	4	0	1	0	0	logfile
✔	8PSZ	17865	2024-04-11	2023-07-13	2.42	2.18	2.38	2.4	0.005	0.53	0.0	0.04	17.94	0.01	1.869	2.48	2.06	4.3	95.7	0.0	0.91	0.79	0.89	4.82	2.4	0.002	0.47	0.0	0.04	17.51	0.00	1.801	2.35	0.94	3.6	96.4	0.0	1.15	0.52	0.73	0.89	5.00	23098	1355	16	53	6	109	11195	logfile
✔	8PS2	17843	2024-04-13	2023-07-13	2.9	2.43	2.87	2.8	0.013	1.84	1.0	0.09	14.95	0.01	2.288	2.27	0.37	4.8	95.0	0.3	-2.78	0.72	0.89	4.44	2.8	0.003	0.55	0.0	0.04	16.48	0.00	2.151	6.63	1.57	2.1	97.9	0.0	1.06	0.41	0.71	0.88	3.63	29761	3788	5	0	3	0	0	logfile
✔	8PSA	17848	2024-04-13	2023-07-13	3.6	3.18	3.57	3.3	0.014	1.91	0.0	0.09	15.24	0.01	2.170	5.97	0.74	7.9	91.5	0.6	-3.68	0.71	0.83	2.38	2.9	0.003	0.62	0.0	0.04	16.33	0.00	2.151	11.89	1.75	3.3	96.7	0.0	0.14	0.45	0.71	0.81	2.21	29681	3788	4	0	1	0	0	logfile
✔	8PSL	17855	2024-04-13	2023-07-13	3.7	3.61	3.56	3.5	0.014	1.89	0.0	0.09	14.72	0.01	2.124	4.80	0.22	7.3	92.2	0.5	-3.55	0.71	0.85	2.18	3.4	0.003	0.60	0.0	0.04	15.94	0.00	2.083	10.60	1.85	4.0	96.0	0.0	0.46	1.13	0.71	0.83	1.97	29610	3777	4	0	1	0	0	logfile
✔	8TGL	41240	2024-04-05	2023-07-12	3.4	2.34	3.39	3.3	0.005	0.91	0.0	0.04	17.15	0.01	2.218	30.23	0.82	1.7	98.1	0.1	1.90	0.73	0.71	2.60	3.3	0.004	0.72	0.0	0.04	16.70	0.01	2.170	12.25	3.60	2.4	97.6	0.0	0.80	0.94	0.74	0.74	2.22	5734	760	4	0	2	0	0	logfile
✔	8TGi	41237	2024-04-05	2023-07-12	3.4	2.43	3.43	2.2	0.004	0.88	0.0	0.05	17.29	0.01	2.208	22.01	0.81	1.1	98.9	0.0	0.60	0.74	0.75	1.85	2.2	0.004	0.72	0.0	0.05	16.83	0.01	2.172	9.09	2.76	2.6	97.4	0.0	0.92	0.76	0.75	0.76	1.81	5786	767	4	0	2	0	0	logfile
✔	8TGH	41236	2024-04-05	2023-07-12	3.5	2.39	3.45	2.2	0.007	0.93	0.0	0.05	16.89	0.01	2.269	16.16	0.98	2.5	97.5	0.0	0.62	0.79	0.82	2.22	2.2	0.003	0.62	0.0	0.04	16.54	0.01	2.239	4.25	3.74	3.0	97.0	0.0	1.40	0.76	0.78	0.79	2.41	5778	767	4	0	2	0	0	logfile
✔	8PQV	17825	2024-04-11	2023-07-12	4.0	3.78	3.91	3.6	0.005	0.88	0.0	0.05	18.62	0.01	2.216	5.82	0.53	3.0	96.9	0.1	-1.33	0.83	0.80	—	3.6	0.003	0.57	0.0	0.04	18.55	0.00	2.169	10.46	3.26	2.7	97.3	0.0	1.84	1.11	0.83	0.80	—	24122	2996	1	0	0	0	0	logfile
✔	8TGG	41235	2024-04-05	2023-07-12	3.6	2.40	3.59	2.2	0.006	0.96	0.0	0.05	17.35	0.01	2.212	22.24	0.49	2.0	97.9	0.1	0.53	0.72	0.72	1.84	2.2	0.003	0.68	0.0	0.04	17.59	0.00	2.205	7.50	5.10	2.7	97.3	0.0	1.63	0.97	0.73	0.73	1.53	5717	758	4	0	2	0	0	logfile
✔	8PQW	17826	2024-04-14	2023-07-12	4.2	4.43	4.16	3.5	0.004	0.86	0.0	0.05	14.74	0.01	1.844	6.08	0.03	3.5	96.5	0.0	-1.66	0.84	0.76	—	3.6	0.003	0.57	0.0	0.04	14.37	0.00	1.932	12.03	0.00	3.5	96.5	0.0	1.48	1.12	0.84	0.78	—	30491	4035	10	0	6	0	0	logfile
✔	8TGM	41241	2024-04-05	2023-07-12	3.5	2.42	3.47	2.2	0.006	1.17	1.0	0.05	17.43	0.01	2.279	14.16	0.65	3.0	96.8	0.1	0.63	0.77	0.80	2.24	2.2	0.003	0.67	0.0	0.04	16.84	0.01	2.247	6.19	4.56	3.4	96.6	0.0	0.91	0.35	0.78	0.78	1.92	5826	768	4	0	2	0	0	logfile
✔	8PR3	17833	2024-04-10	2023-07-12	3.9	4.21	3.80	4.0	0.006	1.08	0.0	0.05	17.80	0.01	2.278	6.13	0.67	3.0	96.9	0.0	-1.20	0.80	0.83	1.45	3.9	0.003	0.66	0.0	0.04	17.99	0.00	2.134	13.03	2.93	2.8	97.2	0.0	1.33	0.43	0.80	0.84	1.38	17888	2221	9	0	0	0	0	logfile
✔	8PR4	17834	2024-04-07	2023-07-12	3.5	4.03	3.51	3.8	0.008	1.33	0.0	0.07	17.21	0.01	2.309	4.25	1.00	7.5	92.4	0.2	-3.40	0.81	0.80	1.91	3.8	0.003	0.64	0.0	0.04	16.40	0.00	2.122	9.92	4.24	6.2	93.8	0.0	0.09	0.40	0.82	0.82	1.70	9494	1322	8	0	4	0	0	logfile
✔	8PRV	17839	2024-04-13	2023-07-12	2.9	2.61	2.88	2.5	0.023	2.00	1.0	0.09	15.60	0.01	1.611	3.25	0.22	5.3	94.5	0.2	-3.14	0.73	0.89	4.32	2.5	0.004	0.56	0.0	0.04	16.24	0.00	2.172	6.44	1.54	2.3	97.7	0.0	0.71	0.33	0.72	0.88	3.69	29814	3781	6	0	5	0	0	logfile
✔	8TGJ	41238	2024-04-05	2023-07-12	3.5	2.56	3.51	2.9	0.004	0.90	0.0	0.04	17.57	0.01	2.292	25.32	0.66	1.6	98.4	0.0	0.58	0.71	0.72	1.85	2.9	0.003	0.71	0.0	0.04	17.37	0.01	2.125	9.70	3.61	2.8	97.2	0.0	0.97	0.37	0.72	0.72	1.48	5720	761	3	0	1	0	0	logfile
✔	8PR2	17832	2024-04-09	2023-07-12	3.8	3.87	3.70	3.9	0.005	1.03	0.0	0.05	18.62	0.01	1.770	5.14	0.74	2.5	97.4	0.1	-0.80	0.74	0.81	1.58	3.9	0.004	0.94	0.0	0.04	18.87	0.00	2.172	11.58	3.14	2.0	97.9	0.1	2.65	0.41	0.75	0.83	1.51	14906	1816	6	0	0	0	0	logfile
✔	8PQY	17828	2024-04-13	2023-07-12	3.8	3.66	3.89	2.8	0.004	0.89	0.0	0.05	17.21	0.01	1.902	5.70	0.36	3.8	96.2	0.0	-1.91	0.84	0.74	1.03	2.8	0.003	0.60	0.0	0.04	17.45	0.00	1.950	13.26	2.91	3.7	96.2	0.0	0.56	0.36	0.84	0.75	0.96	27916	3518	4	0	6	0	0	logfile

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