Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8TDo	41172	2024-04-05	2023-07-04	3.1	3.56	2.70	3.5	0.005	0.56	0.0	0.05	13.25	0.01	2.175	16.36	0.00	3.4	96.6	0.0	-3.41	0.50	0.84	5.15	3.4	0.006	0.58	0.0	0.05	14.92	0.00	2.220	12.88	2.53	4.8	95.2	0.0	-3.57	0.33	0.51	0.84	5.08	2892	372	4	0	0	0	0	logfile
✔	8PoH	17792	2024-04-10	2023-07-04	3.3	3.52	3.34	3.5	0.003	0.56	0.0	0.04	18.79	0.00	2.001	6.79	2.37	3.1	96.9	0.0	0.11	0.69	0.80	2.24	3.5	0.003	0.55	0.0	0.04	18.75	0.00	1.969	6.40	3.19	2.9	97.1	0.0	0.55	0.35	0.77	0.84	2.13	20729	2479	11	38	1	0	0	logfile
✔	8JYK	36724	2024-04-12	2023-07-03	2.59	3.04	2.60	2.8	0.003	0.55	0.0	0.05	13.58	0.00	2.202	3.95	0.00	3.5	96.5	0.0	0.19	0.85	0.86	3.49	2.9	0.002	0.53	0.0	0.04	14.06	0.00	2.154	4.41	0.83	3.8	96.2	0.0	0.47	0.29	0.84	0.86	3.46	25638	3183	15	0	54	0	0	logfile
✔	8JYN	36727	2024-04-15	2023-07-03	3.04	3.39	3.01	3.2	0.003	0.54	0.0	0.05	13.71	0.00	2.203	4.51	0.00	3.7	96.3	0.0	0.42	0.80	0.83	2.17	3.2	0.002	0.56	0.0	0.04	13.83	0.00	2.199	6.09	0.83	3.1	96.8	0.0	0.57	0.52	0.82	0.87	2.06	29000	3577	18	0	59	0	0	logfile
✔	8TDK	41165	2024-04-17	2023-07-03	3.5	4.42	3.27	3.9	0.002	0.43	0.0	0.04	12.43	0.00	2.153	4.71	0.00	2.0	98.0	0.0	5.24	0.64	0.76	1.85	3.9	0.003	0.48	0.0	0.04	12.57	0.00	2.101	8.68	2.01	2.1	97.9	0.0	4.79	1.28	0.65	0.77	2.92	41622	3269	7	0	0	0	19348	logfile
✔	8TDM	41168	2024-04-17	2023-07-03	3.7	4.38	3.17	3.9	0.002	0.44	0.0	0.04	12.36	0.00	2.343	4.74	0.05	1.7	98.3	0.0	4.47	0.65	0.78	2.02	3.9	0.003	0.48	0.0	0.04	12.83	0.00	2.139	5.65	1.88	1.4	98.6	0.0	4.56	1.26	0.65	0.78	2.05	43029	3269	7	0	0	0	20279	logfile
✔	8JYP	36729	2024-04-07	2023-07-03	3.38	4.15	3.49	3.8	0.003	0.62	0.0	0.05	14.64	0.00	2.291	5.18	0.00	2.5	97.5	0.0	0.39	0.84	0.84	2.35	3.8	0.003	0.57	0.0	0.04	13.36	0.00	2.248	7.73	1.58	2.8	97.2	0.0	1.02	1.06	0.84	0.85	2.48	6627	795	7	0	14	0	0	logfile
✔	8JY5	36720	2024-04-07	2023-07-03	4.17	7.05	4.27	6.5	0.003	0.66	0.0	0.04	13.66	0.00	2.119	12.08	0.00	2.4	97.5	0.1	0.01	0.63	0.77	—	6.5	0.003	0.67	0.0	0.04	13.61	0.00	2.109	17.99	0.00	3.0	97.0	0.1	0.62	3.28	0.63	0.81	—	11511	1457	1	0	0	0	0	logfile
✔	8TDL	41166	2024-04-14	2023-07-03	3.6	4.14	3.01	3.4	0.003	0.49	0.0	0.04	11.61	0.00	2.368	4.65	0.00	1.1	98.9	0.0	3.94	0.73	0.79	2.99	3.4	0.003	0.49	0.0	0.04	12.67	0.00	2.113	5.59	1.25	1.8	98.2	0.0	4.41	0.46	0.72	0.80	3.26	32732	2548	7	0	0	0	15197	logfile
✔	8TDJ	41164	2024-04-17	2023-07-03	3.7	4.17	3.11	3.5	0.002	0.46	0.0	0.04	11.53	0.00	2.162	3.29	0.36	0.7	99.3	0.0	3.76	0.63	0.78	2.50	3.5	0.002	0.47	0.0	0.04	11.96	0.00	2.255	5.73	0.62	0.9	99.1	0.0	4.85	0.35	0.63	0.79	2.49	43162	3269	7	0	0	0	20391	logfile
✔	8PNU	17785	2024-04-08	2023-07-02	2.12	2.03	2.12	2.1	0.004	0.64	0.0	0.04	17.64	0.01	2.271	4.41	2.87	0.7	99.3	0.0	2.57	0.82	0.87	5.05	2.1	0.004	0.67	0.0	0.04	16.01	0.00	2.229	4.45	2.15	1.5	98.5	0.0	2.14	1.69	0.81	0.88	5.69	12888	1626	30	0	12	264	0	logfile
✔	8TCo	41156	2024-04-08	2023-07-02	2.8	2.31	—	2.1	0.003	0.64	0.0	0.05	14.09	0.01	2.138	8.05	0.00	3.5	96.5	0.0	-0.22	0.76	0.75	3.03	2.1	0.004	0.67	0.0	0.05	15.61	0.00	2.115	11.68	2.21	4.2	95.8	0.0	-0.11	1.02	0.77	0.77	2.75	13222	1633	12	0	15	0	0	logfile
✔	8PNV	17786	2024-04-08	2023-07-02	2.048	1.96	2.05	2.0	0.004	0.66	0.0	0.04	17.46	0.01	2.188	3.74	2.87	1.1	98.9	0.0	2.57	0.79	0.86	5.51	2.0	0.004	0.63	0.0	0.04	16.41	0.00	2.163	4.22	1.91	1.4	98.6	0.0	2.13	0.73	0.79	0.86	5.79	13098	1626	30	0	6	522	0	logfile
✔	8JY4	36719	2024-04-11	2023-07-02	3.58	4.95	3.68	4.2	0.003	0.55	0.0	0.04	15.96	0.00	1.980	6.92	0.00	3.0	96.9	0.1	-0.52	0.62	0.78	0.68	4.2	0.003	0.64	0.0	0.04	16.09	0.00	2.086	13.89	2.28	3.6	96.3	0.1	1.01	1.35	0.62	0.80	0.40	22246	1383	1	0	0	0	11252	logfile
✔	8JXQ	36709	2024-04-11	2023-07-01	3.32	4.45	3.31	3.8	0.007	0.60	0.0	0.04	14.81	0.01	2.035	4.63	0.41	1.4	98.5	0.1	-1.95	0.61	0.75	1.68	3.9	0.003	0.63	0.0	0.04	15.16	0.00	1.991	7.53	1.71	1.4	98.6	0.0	0.42	0.76	0.61	0.81	1.71	22397	1388	2	0	2	0	11287	logfile
✔	8JXV	36714	2024-04-06	2023-07-01	3.21	2.43	3.22	3.3	0.006	0.85	0.0	0.05	13.19	0.00	2.068	12.58	0.00	5.8	94.2	0.0	-0.75	0.70	0.69	1.54	3.2	0.005	0.70	0.0	0.04	14.97	0.00	2.078	10.97	2.18	5.2	94.8	0.0	0.09	0.30	0.71	0.71	1.15	7935	1040	6	0	1	0	0	logfile
✔	8PNT	17784	2024-04-09	2023-07-01	3.46	4.06	3.42	3.7	0.007	0.58	0.0	0.04	13.55	0.00	2.108	4.49	0.12	2.8	96.9	0.2	1.52	0.86	0.83	1.90	3.7	0.003	0.49	0.0	0.03	14.84	0.00	2.068	6.87	0.84	1.7	98.3	0.0	3.47	1.18	0.87	0.84	1.63	15117	927	5	0	1	0	7508	logfile
✔	8JXU	36713	2024-04-11	2023-07-01	3.55	4.88	3.65	4.2	0.004	0.58	0.0	0.04	16.10	0.00	1.797	7.60	0.24	4.8	95.2	0.0	-1.05	0.63	0.77	0.89	4.2	0.004	0.62	0.0	0.04	16.12	0.00	1.806	15.19	2.08	4.8	95.2	0.0	-0.25	0.81	0.62	0.80	0.61	22749	1410	2	0	3	0	11485	logfile
✔	8JXW	36715	2024-04-06	2023-07-01	3.01	3.30	3.13	3.4	0.006	0.87	0.0	0.05	13.11	0.01	2.092	6.36	0.80	4.2	95.8	0.0	-0.59	0.61	0.77	3.22	3.4	0.002	0.53	0.0	0.04	14.76	0.00	2.163	4.04	1.38	2.6	97.4	0.0	0.84	0.38	0.57	0.75	2.22	8389	1108	6	0	1	0	0	logfile
✔	8JXT	36712	2024-04-06	2023-07-01	3.07	3.35	3.13	3.4	0.005	0.68	0.0	0.04	12.50	0.01	2.228	7.13	0.24	5.4	94.6	0.0	-0.33	0.55	0.69	2.25	3.4	0.002	0.56	0.0	0.04	14.69	0.00	2.067	5.77	1.89	3.1	96.9	0.0	0.52	1.19	0.57	0.73	1.75	8298	1107	6	0	2	0	0	logfile

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