Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8JXX	36716	2024-04-06	2023-07-01	3.06	3.38	3.15	3.4	0.007	0.81	0.0	0.05	13.25	0.01	2.173	4.81	0.00	4.8	95.2	0.0	-0.22	0.63	0.79	2.61	3.5	0.002	0.57	0.0	0.04	14.89	0.00	2.174	5.11	2.91	3.7	96.3	0.0	0.85	0.31	0.61	0.78	1.70	8493	1103	6	0	1	0	0	logfile
✔	8TCG	41154	2024-04-07	2023-06-30	3.4	3.89	3.42	3.8	0.014	1.68	0.0	0.08	12.48	0.01	1.500	0.34	0.16	3.5	96.5	0.0	0.10	0.76	0.73	2.15	3.8	0.004	0.62	0.0	0.04	14.58	0.00	1.900	7.63	1.27	6.4	93.4	0.1	-0.56	2.19	0.78	0.78	2.79	11597	754	6	0	13	0	5652	logfile
✔	8TCF	41153	2024-04-06	2023-06-30	2.9	3.25	2.96	3.2	0.014	1.40	0.0	0.09	12.16	0.01	1.804	0.72	0.41	3.7	96.2	0.1	0.27	0.75	0.76	3.61	3.2	0.003	0.65	0.0	0.05	14.91	0.00	1.937	8.81	2.03	3.6	96.3	0.1	0.35	0.76	0.75	0.81	3.20	7050	878	9	0	22	0	0	logfile
✔	8PNP	17782	2024-04-08	2023-06-30	2.49	2.59	2.43	2.6	0.003	0.50	0.0	0.04	18.52	0.00	2.019	4.32	1.24	2.2	97.7	0.1	0.87	0.81	0.91	3.66	2.6	0.003	0.55	0.0	0.04	18.55	0.00	2.142	5.58	1.83	2.2	97.8	0.0	0.80	0.89	0.81	0.92	3.61	14460	1715	9	29	0	43	0	logfile
✔	8JX7	36691	2024-04-07	2023-06-30	3.6	4.97	3.68	4.2	0.003	0.65	0.0	0.04	17.21	0.00	2.057	8.94	0.00	2.3	97.7	0.0	0.20	0.63	0.77	0.93	4.2	0.003	0.92	0.0	0.05	16.84	0.00	2.140	16.51	2.07	2.1	97.9	0.0	0.39	1.71	0.63	0.84	0.90	11237	1416	1	0	0	0	0	logfile
✔	8PN8	17778	2024-04-15	2023-06-30	2.31	2.78	2.42	2.7	0.035	1.37	0.0	0.05	11.04	0.00	1.608	8.27	0.43	1.0	99.0	0.0	0.98	0.69	0.89	5.17	2.6	0.004	0.55	0.0	0.05	14.49	0.00	2.162	8.64	1.68	2.0	98.0	0.0	0.56	0.41	0.66	0.89	5.04	34298	4314	36	0	12	866	0	logfile
✔	8PNQ	17783	2024-04-09	2023-06-30	2.88	2.70	2.80	2.9	0.004	0.46	0.0	0.04	18.92	0.00	1.845	3.86	2.01	1.8	98.2	0.0	1.69	0.77	0.90	3.32	2.9	0.003	0.50	0.0	0.04	18.88	0.00	1.967	6.42	2.66	2.5	97.5	0.0	1.33	0.32	0.77	0.91	3.21	14913	1726	7	45	3	0	0	logfile
✔	8JWG	36682	2024-04-07	2023-06-29	3.54	4.16	3.72	4.0	0.005	0.72	0.0	0.04	9.43	0.00	2.223	2.05	0.00	7.9	92.1	0.0	-3.71	0.68	0.71	1.76	4.0	0.003	0.64	0.0	0.04	14.44	0.00	2.235	9.08	1.86	7.1	92.9	0.0	-0.63	1.44	0.69	0.74	0.92	9620	1192	2	0	1	0	0	logfile
✔	8JWi	36684	2024-04-07	2023-06-29	2.94	3.38	3.21	3.4	0.005	0.81	0.0	0.04	9.61	0.00	2.035	1.42	0.00	6.7	93.3	0.0	-3.73	0.65	0.78	2.96	3.4	0.003	0.63	0.0	0.04	14.63	0.00	1.941	3.93	1.81	7.5	92.5	0.0	-0.75	0.63	0.67	0.83	2.27	9431	1164	2	0	4	0	0	logfile
✔	8PMP	17763	2024-04-06	2023-06-29	3.43	4.10	3.39	3.7	0.007	0.73	0.0	0.04	14.59	0.01	1.191	16.46	0.12	2.9	96.8	0.3	1.40	0.80	0.68	0.79	3.8	0.003	0.70	0.0	0.04	16.95	0.00	2.174	18.93	3.25	2.1	97.9	0.0	1.33	3.18	0.83	0.76	1.14	7554	920	4	0	1	0	0	logfile
✔	8JWF	36681	2024-04-07	2023-06-29	3.64	4.25	3.77	4.0	0.007	0.80	0.0	0.05	10.45	0.01	2.208	3.05	0.09	7.2	92.8	0.0	-3.42	0.69	0.74	1.48	4.0	0.003	0.63	0.0	0.04	13.93	0.00	2.122	8.94	2.58	5.4	94.6	0.0	0.43	1.35	0.71	0.76	0.82	9717	1204	2	0	1	0	0	logfile
✔	8PMQ	17764	2024-04-06	2023-06-29	3.53	3.56	3.44	3.6	0.005	0.74	0.0	0.05	14.38	0.01	1.498	6.53	0.50	5.9	94.1	0.0	0.65	0.78	0.84	1.96	3.6	0.004	0.59	0.0	0.04	16.01	0.00	2.219	7.52	3.53	5.0	95.0	0.0	0.82	1.45	0.77	0.84	1.65	7746	1007	6	0	2	0	0	logfile
✔	8PM6	17758	2024-04-06	2023-06-28	3.22	3.42	3.06	3.4	0.005	0.80	1.0	0.05	18.41	0.01	2.200	14.16	0.42	4.8	95.2	0.0	0.94	0.49	0.75	1.34	3.4	0.003	0.57	0.0	0.04	16.68	0.00	2.198	8.83	4.04	5.2	94.8	0.0	1.16	1.72	0.57	0.81	1.24	7029	872	2	0	9	0	0	logfile
✔	8TAZ	41143	2024-04-13	2023-06-28	3.75	4.14	4.15	3.9	0.017	0.94	1.0	0.05	15.30	0.01	2.119	15.61	0.03	7.3	92.4	0.3	-1.61	0.70	0.60	1.06	3.9	0.011	0.76	0.0	0.05	16.56	0.00	2.137	12.12	3.40	7.5	92.4	0.1	-1.18	2.62	0.75	0.76	1.32	28269	3591	4	0	0	0	0	logfile
✔	8TB7	41145	2024-04-08	2023-06-28	2.94	3.15	2.96	3.2	0.004	0.71	0.0	0.05	13.76	0.00	2.159	5.57	0.00	5.5	94.5	0.0	0.07	0.62	0.77	2.73	3.2	0.003	0.58	0.0	0.05	16.34	0.00	2.122	5.13	1.50	5.6	94.4	0.0	0.39	0.45	0.63	0.79	2.24	13468	879	5	0	1	1	6676	logfile
✔	8PM4	17757	2024-04-06	2023-06-28	2.93	3.28	3.02	3.2	0.007	0.63	0.0	0.04	20.61	0.01	2.220	11.13	1.32	1.7	98.3	0.0	1.17	0.74	0.82	2.99	3.2	0.003	0.53	0.0	0.04	21.09	0.00	2.186	9.82	1.54	1.5	98.5	0.0	2.14	1.15	0.73	0.82	2.44	6624	604	4	96	0	0	0	logfile
✔	8PMJ	17761	2024-04-06	2023-06-28	2.81	2.56	2.83	2.8	0.004	0.64	0.0	0.05	15.66	0.00	1.958	6.81	0.00	2.4	97.6	0.0	0.56	0.64	0.83	3.00	2.8	0.002	0.54	0.0	0.04	16.49	0.00	2.020	5.23	2.46	2.2	97.8	0.0	1.21	0.37	0.63	0.84	2.54	8985	1133	2	0	9	3	0	logfile
✔	8PM2	17756	2024-04-06	2023-06-28	2.92	2.98	2.94	3.3	0.006	0.78	0.0	0.05	13.03	0.01	2.132	4.04	0.00	2.4	97.6	0.0	0.56	0.74	0.80	3.49	3.3	0.004	0.64	0.0	0.04	16.01	0.00	2.101	9.25	3.37	3.0	97.0	0.0	1.31	0.54	0.74	0.84	3.01	7821	1009	6	0	2	0	0	logfile
✔	8PMD	17759	2024-04-06	2023-06-28	2.95	2.88	2.91	2.9	0.004	0.66	0.0	0.04	18.21	0.00	1.353	11.85	0.21	1.8	98.2	0.0	1.07	0.62	0.80	2.46	2.9	0.005	0.67	0.0	0.05	18.71	0.00	1.881	11.35	2.89	2.0	98.0	0.0	0.96	0.47	0.61	0.80	2.51	8844	1129	2	0	4	2	0	logfile
✔	8JW4	36679	2024-04-07	2023-06-28	3.13	3.85	3.39	3.8	0.005	0.76	0.0	0.05	9.53	0.00	2.214	2.01	0.28	8.2	91.8	0.0	-4.11	0.63	0.70	2.66	3.7	0.002	0.61	0.0	0.04	14.12	0.00	2.198	5.25	1.86	5.8	94.2	0.0	-1.06	1.34	0.63	0.73	1.14	9582	1191	1	0	0	0	0	logfile

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