Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8PM4	17757	2024-04-06	2023-06-28	2.93	3.28	3.02	3.2	0.007	0.63	0.0	0.04	20.61	0.01	2.220	11.13	1.32	1.7	98.3	0.0	1.17	0.74	0.82	2.99	3.2	0.003	0.53	0.0	0.04	21.09	0.00	2.186	9.82	1.54	1.5	98.5	0.0	2.14	1.15	0.73	0.82	2.44	6624	604	4	96	0	0	0	logfile
✔	8TAG	41134	2024-04-11	2023-06-27	3.2	3.45	3.25	3.4	0.004	0.63	1.0	0.11	14.05	0.00	1.622	8.94	0.00	4.8	95.2	0.0	0.76	0.63	0.79	3.04	3.4	0.005	0.58	1.0	0.05	15.01	0.01	1.830	7.46	0.87	4.6	95.4	0.0	0.73	0.95	0.61	0.83	2.67	23516	1448	4	0	9	0	11607	logfile
✔	8JV8	36671	2024-04-06	2023-06-27	3.34	4.07	3.31	3.8	0.015	1.47	0.0	0.06	17.53	0.01	1.988	14.93	3.55	6.5	93.4	0.1	-1.23	0.72	0.76	2.32	3.9	0.002	0.68	0.0	0.04	17.14	0.00	2.168	8.31	4.32	5.2	94.8	0.0	-0.28	0.96	0.73	0.77	2.48	7245	960	9	0	9	3	0	logfile
✔	8TAo	41139	2024-04-08	2023-06-27	2.9	3.35	—	3.1	0.004	0.52	0.0	0.04	13.36	0.00	2.231	4.77	0.00	3.6	96.4	0.0	0.43	0.83	0.82	3.16	3.1	0.003	0.53	0.0	0.04	14.98	0.00	2.235	4.51	1.04	3.9	96.1	0.0	0.70	0.27	0.85	0.86	2.82	13422	1794	6	0	3	0	0	logfile
✔	8JV7	36670	2024-04-06	2023-06-27	3.6	3.94	3.45	3.8	0.003	0.63	0.0	0.05	16.86	0.00	2.147	9.04	1.38	2.8	97.2	0.0	-0.06	0.67	0.77	2.60	3.8	0.002	0.51	0.0	0.04	16.55	0.00	2.179	7.50	4.28	2.7	97.3	0.0	0.22	1.27	0.71	0.80	2.95	7245	960	9	0	9	3	0	logfile
✔	8TAH	41135	2024-04-09	2023-06-27	2.89	2.18	3.39	2.1	0.005	0.66	0.0	0.05	13.05	0.01	2.043	2.22	4.46	4.0	96.0	0.0	-2.21	0.66	0.74	3.58	1.9	0.004	0.53	0.0	0.04	15.54	0.00	1.865	5.82	3.91	2.9	97.0	0.1	0.73	0.94	0.80	0.83	3.17	14978	1884	10	0	4	0	0	logfile
✔	8JUZ	36667	2024-04-12	2023-06-27	4.29	4.11	4.43	3.9	0.003	0.72	0.0	0.04	15.18	0.00	2.131	9.33	0.07	6.6	93.3	0.1	-0.25	0.66	0.49	—	3.9	0.003	0.69	0.0	0.04	14.65	0.00	2.097	10.44	0.00	6.2	93.8	0.1	-0.25	2.00	0.79	0.72	—	25274	3155	12	0	6	0	0	logfile
✔	8PLZ	17754	2024-04-05	2023-06-27	1.9	1.74	1.98	1.9	0.004	0.76	0.0	0.05	16.73	0.01	2.212	4.12	0.90	1.6	98.2	0.2	0.88	0.63	0.80	5.76	1.9	0.005	0.73	0.0	0.05	17.09	0.01	2.180	5.49	1.26	1.5	98.4	0.2	1.02	0.76	0.63	0.80	5.51	5271	630	7	0	2	164	0	logfile
✔	8TAL	41137	2024-04-11	2023-06-27	3.2	3.60	3.32	3.5	0.004	0.60	1.0	0.11	14.46	0.01	1.868	10.17	0.00	4.5	95.4	0.1	0.92	0.58	0.79	2.53	3.5	0.004	0.53	1.0	0.05	15.59	0.00	1.903	7.54	1.19	5.3	94.7	0.0	1.05	0.42	0.58	0.81	2.23	23516	1448	4	0	9	0	11607	logfile
✔	8TAi	41136	2024-04-11	2023-06-27	3.1	3.46	3.15	3.4	0.003	0.56	0.0	0.06	13.72	0.00	1.625	7.88	0.00	4.2	95.8	0.0	1.32	0.60	0.82	2.84	3.4	0.004	0.54	1.0	0.05	15.00	0.00	1.897	6.44	1.27	4.0	96.0	0.0	1.17	0.96	0.60	0.84	2.73	23516	1448	4	0	9	0	11607	logfile
✔	8JV6	36669	2024-04-06	2023-06-27	3.43	3.73	3.38	3.7	0.004	0.59	0.0	0.05	15.64	0.00	2.184	7.00	0.00	2.7	97.3	0.0	0.26	0.62	0.83	2.25	3.7	0.003	0.57	0.0	0.04	15.71	0.00	2.229	7.28	2.61	3.2	96.8	0.0	0.30	0.30	0.59	0.82	2.28	7458	948	6	0	15	0	0	logfile
✔	8TAU	41142	2024-04-05	2023-06-27	3.5	3.03	3.36	1.8	0.006	0.79	0.0	0.00	7.52	0.01	2.188	4.55	0.00	2.1	97.9	0.0	-2.34	0.73	0.66	—	2.3	0.003	0.67	0.0	0.00	4.65	0.00	2.053	9.28	0.00	11.9	88.1	0.0	-2.02	0.69	0.78	0.73	—	54106	9002	25	0	4	0	18087	logfile
✔	8PM0	17755	2024-04-09	2023-06-27	2.9	2.60	2.83	2.8	0.003	0.48	0.0	0.04	19.03	0.00	1.995	4.79	2.14	2.3	97.7	0.0	0.93	0.75	0.86	2.76	2.9	0.004	0.72	1.0	0.04	19.03	0.00	2.206	6.70	2.48	2.1	97.9	0.0	0.60	0.33	0.76	0.88	2.61	16669	1996	7	31	1	0	0	logfile
✔	8PKP	17751	2024-04-07	2023-06-27	3.2	4.15	3.27	3.5	0.006	0.67	0.0	0.04	17.68	0.01	2.193	11.76	0.52	2.7	97.3	0.0	0.64	0.87	0.81	1.59	3.5	0.003	0.62	0.0	0.04	17.73	0.00	2.099	13.23	2.29	2.7	97.3	0.0	1.54	0.54	0.90	0.86	1.41	64691	8135	20	0	1	0	0	logfile
✔	8TAN	41138	2024-04-08	2023-06-27	3.05	3.69	3.01	3.4	0.004	0.77	0.0	0.05	13.80	0.00	2.194	5.98	2.19	6.7	93.3	0.0	-1.74	0.81	0.77	1.64	3.4	0.004	0.77	0.0	0.05	15.71	0.00	2.154	17.28	3.05	8.6	91.4	0.0	-1.12	1.39	0.82	0.78	1.96	13853	1698	8	0	18	0	0	logfile
✔	8JUY	36666	2024-04-12	2023-06-27	4.34	4.24	4.46	4.2	0.005	0.86	0.0	0.05	15.36	0.01	1.353	19.63	0.15	8.7	91.2	0.1	-1.58	0.73	0.63	—	4.1	0.003	0.72	0.0	0.04	14.48	0.00	2.027	12.00	0.00	7.3	92.6	0.1	-0.88	1.44	0.78	0.72	—	24554	3069	11	0	6	0	0	logfile
✔	8TAR	41140	2024-04-05	2023-06-27	4.0	3.08	3.83	2.0	0.005	0.76	0.0	0.06	7.03	0.00	2.106	1.76	0.00	1.8	98.2	0.0	-1.85	0.74	0.68	—	2.7	0.003	0.67	0.0	0.04	4.46	0.00	2.092	6.48	0.00	10.2	89.8	0.0	-1.12	1.26	0.78	0.76	—	54010	8984	24	0	4	0	18053	logfile
✔	8JV5	36668	2024-04-06	2023-06-27	3.23	3.50	3.16	3.4	0.004	0.91	0.0	0.04	12.60	0.00	2.312	5.16	0.76	2.9	97.1	0.0	0.88	0.65	0.80	2.90	3.5	0.003	0.63	0.0	0.04	14.65	0.00	2.247	7.78	2.28	2.9	97.1	0.0	0.53	0.98	0.63	0.81	3.08	7480	949	6	0	12	0	0	logfile
✔	8JUW	36665	2024-04-12	2023-06-27	3.79	4.06	4.06	3.9	0.006	0.80	0.0	0.05	15.49	0.01	2.105	9.39	0.04	8.5	91.4	0.2	-1.15	0.80	0.74	2.19	3.9	0.003	0.64	0.0	0.04	16.64	0.00	2.151	8.66	1.84	6.4	93.5	0.1	0.11	1.31	0.85	0.83	1.76	25282	3156	11	0	6	0	0	logfile
✔	8TA3	41127	2024-04-08	2023-06-26	2.46	2.64	2.45	2.6	0.013	1.82	1.0	0.09	13.07	0.01	2.519	0.13	0.92	2.5	97.4	0.1	-0.45	0.57	0.78	3.76	2.6	0.003	0.55	0.0	0.04	15.27	0.00	2.008	2.23	1.05	2.5	97.5	0.0	2.51	0.55	0.57	0.79	2.54	14837	942	4	0	2	0	7545	logfile

• ← previous
• Page 42 of 610
• next →