Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8PKF	17737	2024-04-05	2023-06-26	2.3673	1.91	2.30	2.6	0.013	1.73	0.0	0.12	11.30	0.01	2.355	0.12	0.00	2.3	97.7	0.0	-2.77	0.43	0.75	4.64	2.6	0.004	0.63	0.0	0.05	16.34	0.00	2.253	7.31	2.78	4.9	95.1	0.0	-2.40	1.95	0.52	0.84	4.83	4308	552	6	0	0	0	0	logfile
✔	8JUL	36661	2024-04-07	2023-06-26	2.92	3.12	2.91	3.1	0.010	1.32	13.0	0.08	14.58	0.01	1.832	9.92	0.00	7.3	92.7	0.0	-3.09	0.68	0.82	3.48	3.1	0.004	0.66	0.0	0.04	16.60	0.01	2.002	8.07	3.66	6.6	93.4	0.0	0.34	0.47	0.65	0.82	3.30	9690	1246	6	0	4	2	0	logfile
✔	8TA3	41127	2024-04-08	2023-06-26	2.46	2.64	2.45	2.6	0.013	1.82	1.0	0.09	13.07	0.01	2.519	0.13	0.92	2.5	97.4	0.1	-0.45	0.57	0.78	3.76	2.6	0.003	0.55	0.0	0.04	15.27	0.00	2.008	2.23	1.05	2.5	97.5	0.0	2.51	0.55	0.57	0.79	2.54	14837	942	4	0	2	0	7545	logfile
✔	8JUN	36662	2024-04-07	2023-06-26	2.38	2.77	2.52	2.7	0.007	1.00	0.0	0.05	14.89	0.00	1.983	7.87	0.00	4.7	95.3	0.0	-1.69	0.64	0.81	3.78	2.7	0.003	0.57	0.0	0.04	16.22	0.00	1.890	6.03	1.49	2.8	97.2	0.0	0.68	1.22	0.66	0.84	3.80	11098	1356	4	0	4	0	0	logfile
✔	8TA5	41129	2024-04-10	2023-06-26	2.76	3.06	2.88	3.1	0.013	1.80	2.0	0.09	13.22	0.01	2.536	0.10	1.36	3.2	96.7	0.1	-1.18	0.46	0.61	2.03	3.1	0.003	0.55	0.0	0.04	15.38	0.00	2.128	3.95	1.36	3.3	96.7	0.0	1.92	1.45	0.50	0.75	2.39	19775	1250	4	0	2	0	10041	logfile
✔	8TA4	41128	2024-04-10	2023-06-26	2.75	3.01	2.86	3.1	0.013	1.80	2.0	0.09	13.22	0.01	2.536	0.10	1.36	3.2	96.7	0.1	-1.18	0.59	0.81	3.86	3.1	0.003	0.53	0.0	0.04	15.38	0.00	2.146	2.48	0.97	3.5	96.5	0.0	1.59	1.44	0.54	0.79	2.75	19775	1250	4	0	2	0	10041	logfile
✔	8TA6	41130	2024-04-05	2023-06-26	4.03	4.31	5.52	4.2	0.013	1.99	1.0	0.10	15.10	0.01	2.524	0.91	2.10	9.4	90.2	0.4	-2.23	0.44	0.72	—	4.2	0.003	0.73	0.0	0.04	13.92	0.00	2.156	13.84	0.00	4.1	95.9	0.0	-1.31	1.53	0.45	0.68	—	2158	274	2	0	0	0	0	logfile
✔	8PKG	17738	2024-04-05	2023-06-26	2.99	2.16	2.99	3.3	0.012	1.65	0.0	0.12	10.76	0.01	2.394	0.12	0.00	2.3	97.7	0.0	-3.24	0.52	0.75	2.62	3.3	0.003	0.71	0.0	0.05	16.76	0.00	2.208	10.77	2.14	2.7	97.3	0.0	-2.43	0.88	0.49	0.78	2.85	4314	552	6	0	0	0	0	logfile
✔	8TA2	41126	2024-04-08	2023-06-26	2.74	2.88	2.77	2.9	0.013	1.91	2.0	0.09	13.79	0.02	2.551	0.07	1.74	2.7	97.1	0.1	-1.61	0.51	0.73	3.48	2.9	0.003	0.58	0.0	0.04	15.53	0.00	2.256	4.32	0.94	2.9	97.1	0.0	0.89	1.46	0.54	0.75	1.83	14605	926	4	0	4	0	7411	logfile
✔	8T9H	41111	2024-04-08	2023-06-24	3.37	4.11	3.37	3.5	0.003	0.52	0.0	0.03	24.90	0.00	2.255	10.80	0.97	2.4	97.6	0.0	1.98	0.88	0.83	2.57	3.5	0.004	0.59	0.0	0.04	25.86	0.00	2.162	14.11	1.33	3.1	96.9	0.0	2.20	1.15	0.88	0.85	2.07	12039	1003	11	201	0	0	0	logfile
✔	8PK3	17724	2024-04-08	2023-06-24	3.4	2.43	3.39	2.0	0.005	0.96	0.0	0.06	19.40	0.01	1.122	12.13	0.72	8.1	91.7	0.2	-3.22	0.71	0.65	1.26	2.0	0.003	0.67	0.0	0.04	18.57	0.00	2.024	15.12	4.00	9.6	90.4	0.0	-2.50	0.93	0.71	0.68	0.83	14277	1752	18	0	27	0	0	logfile
✔	8PJJ	17711	2024-04-09	2023-06-23	4.24	6.93	4.39	4.4	0.003	0.75	0.0	0.04	17.53	0.00	2.120	19.23	0.72	9.6	90.1	0.3	-1.14	0.91	0.81	—	4.4	0.003	0.69	0.0	0.04	17.14	0.00	2.103	20.70	0.24	9.1	90.5	0.3	-1.00	1.01	0.92	0.83	—	8348	946	3	40	1	0	0	logfile
✔	8JU0	36658	2024-04-05	2023-06-23	2.98	3.34	2.92	3.3	0.006	0.81	0.0	0.06	13.41	0.00	2.221	8.35	0.00	1.6	98.4	0.0	1.57	0.52	0.73	2.11	3.3	0.003	0.58	0.0	0.04	14.02	0.00	2.242	8.19	2.56	2.4	97.6	0.0	1.49	0.29	0.50	0.73	2.20	3199	431	2	0	1	0	0	logfile
✔	8PJP	17718	2024-04-05	2023-06-23	2.92	3.55	2.87	3.4	0.007	0.53	0.0	0.04	15.88	0.00	2.365	2.11	1.34	2.5	97.5	0.0	0.81	0.38	0.90	2.83	3.4	0.003	0.64	0.0	0.04	16.78	0.00	2.171	5.63	1.34	2.5	97.5	0.0	0.71	1.06	0.34	0.91	3.06	2157	286	3	0	2	0	0	logfile
✔	8PK0	17719	2024-04-06	2023-06-23	3.03	3.28	3.25	3.1	0.003	0.50	1.0	0.04	17.62	0.01	1.939	7.09	1.05	2.1	97.8	0.1	1.49	0.72	0.81	2.67	3.2	0.004	0.62	0.0	0.04	18.95	0.00	1.855	10.31	1.91	2.4	97.5	0.0	1.16	1.20	0.73	0.84	2.37	108702	9742	66	1495	111	0	0	logfile
✔	8T9F	41109	2024-04-08	2023-06-23	2.6	3.21	2.66	3.0	0.004	0.59	0.0	0.04	25.25	0.00	1.469	4.80	0.00	2.1	97.9	0.0	1.11	0.88	0.87	2.94	3.0	0.003	0.53	0.0	0.03	26.31	0.00	2.098	7.07	2.61	2.0	98.0	0.0	1.51	0.48	0.88	0.87	2.54	13132	1031	12	244	1	0	0	logfile
✔	8PJN	17713	2024-04-06	2023-06-23	3.4	3.52	3.41	3.6	0.007	0.73	0.0	0.05	14.18	0.01	1.512	5.43	0.00	5.1	94.9	0.0	1.04	0.78	0.86	2.67	3.5	0.003	0.50	0.0	0.04	15.82	0.00	2.209	4.33	1.88	4.3	95.7	0.0	1.40	0.29	0.79	0.89	2.60	6917	923	6	0	2	0	0	logfile
✔	8PJB	17703	2024-04-09	2023-06-23	3.62	4.40	3.69	4.1	0.006	0.99	2.0	0.06	18.76	0.03	2.096	11.57	4.25	5.6	93.2	1.2	-0.17	0.82	0.71	1.58	4.1	0.003	0.81	0.0	0.04	17.78	0.01	2.155	13.36	3.31	4.4	95.4	0.2	0.34	0.79	0.86	0.84	1.84	7840	962	3	9	2	0	0	logfile
✔	8T8M	41099	2024-04-08	2023-06-22	3.0	3.51	—	3.4	0.004	0.52	0.0	0.04	13.97	0.00	2.230	6.14	0.00	4.3	95.7	0.0	0.12	0.80	0.81	3.02	3.4	0.003	0.55	0.0	0.04	15.56	0.00	2.155	5.86	1.59	4.6	95.4	0.0	0.56	0.25	0.82	0.86	2.84	13146	1770	6	0	2	0	0	logfile
✔	8T8F	41098	2024-04-08	2023-06-22	4.8	5.11	4.71	4.7	0.003	0.75	1.0	0.05	13.37	0.00	2.201	18.73	0.14	7.3	92.7	0.0	-1.53	0.76	0.63	—	4.7	0.003	0.70	0.0	0.04	13.86	0.00	2.130	16.13	0.07	7.5	92.5	0.0	-0.70	0.77	0.77	0.67	—	13050	1623	5	0	0	0	0	logfile

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