Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8JTZ	36657	2024-04-05	2023-06-22	3.27	3.79	3.41	3.7	0.006	0.90	0.0	0.06	15.42	0.01	2.239	10.05	0.25	3.2	96.8	0.0	-1.05	0.52	0.74	1.46	3.7	0.003	0.57	0.0	0.04	16.05	0.00	2.254	8.79	3.45	3.6	96.4	0.0	0.46	0.37	0.53	0.75	1.33	3999	530	2	0	1	0	0	logfile
✔	8JTS	36651	2024-04-05	2023-06-22	4.14	4.41	3.90	4.4	0.008	0.93	0.0	0.05	14.11	0.02	2.249	8.90	0.31	5.0	95.0	0.0	-0.32	0.53	0.67	—	4.4	0.003	0.69	0.0	0.04	13.91	0.00	2.114	10.74	0.00	5.0	95.0	0.0	0.73	1.15	0.54	0.68	—	3330	461	2	0	1	0	0	logfile
✔	8T8M	41099	2024-04-08	2023-06-22	3.0	3.51	—	3.4	0.004	0.52	0.0	0.04	13.97	0.00	2.230	6.14	0.00	4.3	95.7	0.0	0.12	0.80	0.81	3.02	3.4	0.003	0.55	0.0	0.04	15.56	0.00	2.155	5.86	1.59	4.6	95.4	0.0	0.56	0.25	0.82	0.86	2.84	13146	1770	6	0	2	0	0	logfile
✔	8JTV	36653	2024-04-05	2023-06-22	3.77	4.24	3.67	4.2	0.006	0.66	0.0	0.04	12.16	0.01	2.293	8.08	0.36	4.2	95.8	0.0	0.62	0.51	0.62	0.67	4.2	0.003	0.61	0.0	0.04	15.03	0.00	2.256	8.76	3.61	4.6	95.4	0.0	1.22	0.38	0.51	0.65	0.67	3067	437	2	0	1	0	0	logfile
✔	8JTW	36654	2024-04-05	2023-06-22	3.23	3.56	3.23	3.6	0.002	0.56	0.0	0.04	13.05	0.00	2.309	2.70	0.00	4.3	95.7	0.0	0.14	0.57	0.76	1.88	3.6	0.003	0.60	0.0	0.04	14.73	0.00	2.294	4.58	1.14	6.1	93.9	0.0	0.40	0.30	0.56	0.79	1.42	4282	566	2	0	0	0	0	logfile
✔	8T8E	41097	2024-04-06	2023-06-22	3.3	3.54	3.33	3.5	0.003	0.69	0.0	0.04	16.79	0.00	2.199	12.90	1.03	9.0	90.9	0.2	-3.74	0.72	0.78	1.57	3.5	0.005	0.68	0.0	0.04	17.63	0.00	2.114	12.50	4.41	9.9	90.1	0.0	-2.60	0.36	0.75	0.80	1.12	8755	1085	3	0	0	0	0	logfile
✔	8JTT	36652	2024-04-05	2023-06-22	3.87	4.32	3.71	4.4	0.006	0.87	0.0	0.05	12.93	0.02	2.250	7.82	0.00	4.0	96.0	0.0	-2.01	0.51	0.57	0.20	4.4	0.003	0.67	0.0	0.04	15.37	0.00	2.204	9.35	3.08	4.9	95.1	0.0	-0.02	1.22	0.52	0.60	0.88	3321	454	2	0	1	0	0	logfile
✔	8PiV	17692	2024-04-10	2023-06-22	3.46	3.80	3.35	3.5	0.017	1.48	5.0	0.10	15.86	0.01	2.127	4.62	1.59	3.6	96.0	0.4	-0.16	0.54	0.51	2.31	3.5	0.003	0.67	0.0	0.04	15.47	0.00	2.162	10.17	2.35	2.2	97.6	0.2	1.92	1.66	0.68	0.83	1.73	18089	2293	21	0	16	6	0	logfile
✔	8JT6	36634	2024-04-09	2023-06-21	3.0	2.58	2.85	3.0	0.012	0.77	0.0	0.19	14.09	0.01	2.090	4.98	0.00	1.2	98.8	0.0	2.61	0.55	0.78	2.69	2.8	0.003	0.60	0.0	0.04	15.77	0.00	1.879	5.21	0.75	2.8	97.2	0.0	0.92	0.63	0.56	0.83	2.87	17383	1100	6	0	9	0	8554	logfile
✔	8JTC	36640	2024-04-05	2023-06-21	3.52	3.71	3.55	3.7	0.007	1.06	0.0	0.05	14.57	0.01	2.240	7.41	0.33	3.4	96.6	0.0	1.13	0.56	0.81	1.82	3.7	0.004	0.72	0.0	0.04	15.63	0.00	2.344	8.25	4.61	3.4	96.6	0.0	1.99	0.28	0.57	0.81	1.66	2941	391	2	0	1	0	0	logfile
✔	8JTD	36641	2024-04-09	2023-06-21	4.9	4.51	4.64	4.6	0.005	0.93	0.0	0.07	17.49	0.00	2.048	20.29	0.00	3.8	96.1	0.1	-0.29	0.63	0.55	—	4.6	0.003	0.78	0.0	0.05	12.46	0.00	2.122	17.40	0.00	4.1	95.9	0.0	-0.36	0.61	0.66	0.63	—	17275	1978	51	0	128	0	0	logfile
✔	8PiJ	17683	2024-04-05	2023-06-21	2.9	3.58	2.88	3.3	0.007	0.58	0.0	0.04	17.94	0.00	2.231	3.93	3.46	3.2	96.8	0.0	0.25	0.34	0.89	2.62	3.3	0.002	0.60	0.0	0.04	16.83	0.00	2.242	5.78	1.30	2.8	97.2	0.0	0.89	1.03	0.32	0.89	2.64	2191	288	3	0	2	0	0	logfile
✔	8JTA	36638	2024-04-05	2023-06-21	3.36	3.64	3.38	3.6	0.012	1.27	0.0	0.07	14.16	0.01	2.320	7.70	2.67	5.5	94.5	0.0	-2.72	0.63	0.85	1.70	3.6	0.004	0.78	0.0	0.04	15.76	0.01	2.293	5.48	3.33	3.4	96.6	0.0	1.03	0.97	0.62	0.87	1.81	2879	386	2	0	1	0	0	logfile
✔	8PHP	17670	2024-04-16	2023-06-20	2.56	2.99	2.40	2.8	0.001	0.32	0.0	0.04	12.91	0.00	2.357	1.69	0.00	1.5	98.5	0.0	1.55	0.77	0.89	3.59	2.8	0.003	0.56	0.0	0.04	15.67	0.00	2.173	6.09	1.71	2.0	98.0	0.0	1.80	1.35	0.76	0.91	3.20	40812	4968	24	0	0	0	0	logfile
✔	8T7E	41091	2024-04-08	2023-06-20	3.08	3.40	3.07	3.3	0.005	1.09	0.0	0.06	18.22	0.01	2.288	6.80	0.69	7.6	92.3	0.1	-2.94	0.70	0.63	1.75	3.3	0.003	0.80	0.0	0.06	19.42	0.00	2.178	15.78	2.43	8.5	91.2	0.2	-1.20	0.60	0.75	0.76	1.94	14273	1706	5	36	0	0	0	logfile
✔	8PHW	17677	2024-04-05	2023-06-20	3.6	2.46	3.63	2.1	0.005	0.72	0.0	0.04	12.28	0.01	2.209	10.93	6.20	7.5	92.5	0.0	-3.65	0.72	0.72	2.10	2.1	0.003	0.63	0.0	0.04	14.34	0.00	2.145	8.31	6.54	6.3	93.7	0.0	-0.23	0.68	0.71	0.72	2.11	5359	689	5	0	2	0	0	logfile
✔	8JSM	36623	2024-04-09	2023-06-20	3.3	3.40	3.24	3.3	0.003	0.54	0.0	0.04	15.38	0.00	2.050	5.08	0.06	5.7	94.0	0.3	0.89	0.77	0.86	2.59	3.4	0.002	0.55	0.0	0.04	16.83	0.00	2.145	5.69	1.35	5.9	93.8	0.3	1.17	1.69	0.79	0.89	2.27	14856	1856	7	10	1	0	0	logfile
✔	8T7H	41092	2024-04-08	2023-06-20	3.3	2.38	—	3.4	0.004	0.59	0.0	0.04	13.37	0.00	2.217	7.98	0.00	4.3	95.7	0.0	0.31	0.72	0.68	2.37	3.4	0.004	0.62	0.0	0.05	15.44	0.00	2.118	9.53	2.69	5.3	94.7	0.0	0.26	0.28	0.78	0.78	2.45	13100	1794	6	0	2	0	0	logfile
✔	8T7A	41089	2024-04-09	2023-06-20	2.8	2.99	2.78	3.0	0.005	0.71	0.0	0.05	13.49	0.01	2.212	7.47	0.66	2.0	98.0	0.0	0.46	0.70	0.83	3.76	3.0	0.003	0.52	0.0	0.04	15.33	0.00	2.169	5.70	3.81	1.5	98.5	0.0	0.99	0.33	0.70	0.85	3.67	15819	2040	15	0	3	0	0	logfile
✔	8JSN	36624	2024-04-09	2023-06-20	3.4	3.48	3.33	3.4	0.003	0.58	0.0	0.04	15.44	0.00	2.234	5.28	0.06	5.7	93.9	0.5	0.77	0.78	0.85	2.32	3.4	0.003	0.60	0.0	0.04	16.76	0.00	2.196	6.17	1.29	5.4	94.1	0.5	1.09	0.32	0.80	0.88	2.25	14856	1856	7	10	1	0	0	logfile

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