Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8JSP	36626	2024-04-06	2023-06-20	3.65	3.82	3.55	3.8	0.007	0.83	0.0	0.05	14.07	0.00	2.204	13.73	0.86	5.9	94.1	0.0	-0.89	0.61	0.71	1.51	3.8	0.004	0.68	0.0	0.04	16.06	0.00	2.178	11.68	3.24	5.1	94.9	0.0	-0.54	1.06	0.64	0.73	1.35	8599	1102	6	0	1	0	0	logfile
✔	8JSM	36623	2024-04-09	2023-06-20	3.3	3.40	3.24	3.3	0.003	0.54	0.0	0.04	15.38	0.00	2.050	5.08	0.06	5.7	94.0	0.3	0.89	0.77	0.86	2.59	3.4	0.002	0.55	0.0	0.04	16.83	0.00	2.145	5.69	1.35	5.9	93.8	0.3	1.17	1.69	0.79	0.89	2.27	14856	1856	7	10	1	0	0	logfile
✔	8PHW	17677	2024-04-05	2023-06-20	3.6	2.46	3.63	2.1	0.005	0.72	0.0	0.04	12.28	0.01	2.209	10.93	6.20	7.5	92.5	0.0	-3.65	0.72	0.72	2.10	2.1	0.003	0.63	0.0	0.04	14.34	0.00	2.145	8.31	6.54	6.3	93.7	0.0	-0.23	0.68	0.71	0.72	2.11	5359	689	5	0	2	0	0	logfile
✔	8PHP	17670	2024-04-16	2023-06-20	2.56	2.99	2.40	2.8	0.001	0.32	0.0	0.04	12.91	0.00	2.357	1.69	0.00	1.5	98.5	0.0	1.55	0.77	0.89	3.59	2.8	0.003	0.56	0.0	0.04	15.67	0.00	2.173	6.09	1.71	2.0	98.0	0.0	1.80	1.35	0.76	0.91	3.20	40812	4968	24	0	0	0	0	logfile
✔	8PHo	17669	2024-04-14	2023-06-20	2.34	2.07	2.33	2.2	0.005	0.77	0.0	0.06	13.64	0.01	2.128	1.78	0.00	1.0	99.0	0.0	-0.02	0.73	0.85	3.99	2.2	0.003	0.51	0.0	0.04	17.01	0.00	2.219	2.75	1.18	0.6	99.4	0.0	1.27	0.49	0.72	0.85	4.55	32172	3804	12	0	0	720	0	logfile
✔	8PHF	17660	2024-04-06	2023-06-19	3.6	3.88	3.58	4.0	0.004	0.65	0.0	0.04	16.42	0.00	2.134	11.77	0.11	4.6	95.4	0.0	0.67	0.67	0.71	1.88	4.0	0.003	0.57	0.0	0.04	17.15	0.00	2.174	9.58	1.74	3.3	96.7	0.0	0.80	0.96	0.66	0.71	1.79	8640	1094	4	0	2	0	0	logfile
✔	8T6U	41081	2024-04-06	2023-06-18	3.13	3.96	3.17	3.7	0.011	1.49	0.0	0.18	15.19	0.01	2.246	4.28	0.33	2.6	97.2	0.2	-3.15	0.67	0.86	2.94	3.7	0.003	0.58	0.0	0.04	14.25	0.00	2.275	7.83	1.56	1.8	98.2	0.0	1.94	1.20	0.64	0.84	2.46	8638	1032	8	0	16	36	0	logfile
✔	8JRU	36606	2024-04-07	2023-06-17	3.5	3.76	3.42	3.7	0.004	0.71	0.0	0.04	15.23	0.00	2.241	7.56	0.29	5.5	94.5	0.0	0.41	0.67	0.76	2.11	3.7	0.003	0.66	0.0	0.04	15.64	0.00	2.179	9.94	3.43	6.2	93.6	0.1	-0.16	0.51	0.68	0.80	2.18	7120	947	6	0	1	0	0	logfile
✔	8PG0	17655	2024-04-05	2023-06-17	2.97	2.85	2.96	2.9	0.022	0.94	0.0	0.06	16.43	0.01	2.211	17.04	0.80	4.2	95.6	0.1	0.35	0.56	0.78	2.40	2.8	0.003	0.64	0.0	0.04	15.81	0.00	2.214	9.85	3.51	3.4	96.6	0.0	0.62	0.65	0.55	0.79	2.38	5816	737	4	0	5	0	0	logfile
✔	8JRV	36607	2024-04-07	2023-06-17	3.3	3.01	3.31	3.4	0.003	0.71	0.0	0.04	13.98	0.00	2.250	6.76	0.00	5.2	94.8	0.0	-0.16	0.66	0.78	1.94	3.3	0.005	0.78	0.0	0.04	16.69	0.00	1.991	12.51	4.68	6.7	93.2	0.1	-0.37	1.23	0.69	0.83	2.40	7707	1036	7	0	1	0	0	logfile
✔	8T69	41066	2024-04-05	2023-06-15	2.89	3.18	2.89	3.2	0.004	0.72	0.0	0.04	10.38	0.01	2.381	3.52	0.64	1.8	98.2	0.0	1.12	0.59	0.82	3.29	3.2	0.004	0.65	0.0	0.04	13.74	0.01	2.280	6.04	2.89	3.9	96.1	0.0	1.06	0.99	0.51	0.79	2.38	2923	386	2	0	1	0	0	logfile
✔	8PFB	17645	2024-04-09	2023-06-15	3.67	4.42	3.71	4.0	0.004	0.90	0.0	0.05	14.62	0.01	2.194	3.85	0.32	1.5	98.5	0.0	-1.08	0.68	0.82	2.30	4.0	0.003	0.62	0.0	0.04	15.31	0.00	2.110	8.29	1.17	4.3	95.7	0.0	0.93	1.33	0.68	0.83	2.05	17137	1136	9	0	0	0	8598	logfile
✔	8T6A	41067	2024-04-05	2023-06-15	3.17	3.52	3.18	3.6	0.005	0.82	0.0	0.05	10.91	0.00	2.248	3.67	1.28	2.1	97.9	0.0	1.58	0.59	0.80	2.58	3.5	0.004	0.62	0.0	0.04	13.84	0.01	2.159	6.01	3.21	2.3	97.7	0.0	1.79	0.33	0.61	0.81	2.36	2947	387	2	0	1	0	0	logfile
✔	8PEo	17633	2024-04-08	2023-06-14	2.69	3.21	2.84	2.7	0.005	0.77	0.0	0.05	29.82	0.01	2.201	8.09	0.14	1.9	98.1	0.0	0.99	0.92	0.88	2.79	2.8	0.004	0.63	0.0	0.04	28.15	0.00	2.126	6.84	1.40	2.4	97.6	0.0	1.81	1.39	0.94	0.92	2.91	12835	853	12	294	0	0	0	logfile
✔	8T60	41062	2024-04-09	2023-06-14	3.29	3.54	3.31	3.4	0.003	0.51	0.0	0.04	11.07	0.00	2.114	4.09	1.85	6.6	93.4	0.0	0.46	0.70	0.78	3.49	3.4	0.003	0.55	0.0	0.04	13.30	0.00	2.076	6.77	1.48	6.6	93.4	0.0	0.56	0.64	0.70	0.79	3.12	14921	978	5	0	1	0	7418	logfile
✔	8PEP	17634	2024-04-08	2023-06-14	3.33	4.07	3.32	3.4	0.004	0.72	0.0	0.05	28.76	0.01	2.092	9.54	0.13	1.9	98.1	0.0	0.85	0.92	0.87	1.55	3.4	0.004	0.60	0.0	0.03	27.38	0.00	2.101	9.70	1.01	2.8	97.2	0.0	1.75	2.44	0.94	0.91	1.55	13492	939	12	294	0	0	0	logfile
✔	8T5C	41048	2024-04-08	2023-06-13	4.7	4.69	4.43	4.5	0.005	0.84	0.0	0.05	20.84	0.01	2.044	5.82	1.11	13.5	85.9	0.6	-2.26	0.74	0.72	—	4.5	0.003	0.85	0.0	0.05	13.86	0.00	2.147	19.01	0.00	14.9	84.6	0.5	-2.38	1.79	0.78	0.78	—	14189	1651	35	0	91	0	0	logfile
✔	8PE8	17629	2024-04-06	2023-06-13	3.46	3.95	3.86	3.9	0.002	0.53	0.0	0.04	18.53	0.00	2.221	11.61	0.48	3.4	96.6	0.0	0.65	0.71	0.77	0.76	3.9	0.003	0.57	0.0	0.04	18.66	0.00	2.166	13.59	5.60	4.1	95.9	0.0	0.75	0.37	0.74	0.81	0.67	54782	7392	14	0	0	0	0	logfile
✔	8JPX	36489	2024-04-08	2023-06-13	2.9	3.21	3.11	3.2	0.003	0.56	0.0	0.04	21.05	0.01	1.900	6.83	0.50	7.3	92.7	0.0	-0.57	0.76	0.89	3.28	3.2	0.003	0.58	0.0	0.04	21.36	0.00	1.882	7.04	3.19	7.3	92.6	0.1	-0.39	0.20	0.70	0.88	3.04	14362	1540	12	80	6	0	0	logfile
✔	8PEE	17630	2024-04-07	2023-06-13	3.8	4.16	3.88	4.1	0.016	1.01	0.0	0.07	16.31	0.00	2.233	12.90	0.32	5.8	94.2	0.0	0.32	0.66	0.78	0.86	4.1	0.003	0.68	0.0	0.04	16.04	0.00	2.225	11.71	3.70	5.1	94.9	0.0	0.86	0.99	0.66	0.78	0.62	9217	1158	3	0	6	0	0	logfile

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