Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8T5C	41048	2024-04-08	2023-06-13	4.7	4.69	4.43	4.5	0.005	0.84	0.0	0.05	20.84	0.01	2.044	5.82	1.11	13.5	85.9	0.6	-2.26	0.74	0.72	—	4.5	0.003	0.85	0.0	0.05	13.86	0.00	2.147	19.01	0.00	14.9	84.6	0.5	-2.38	1.79	0.78	0.78	—	14189	1651	35	0	91	0	0	logfile
✔	8JQB	36563	2024-04-14	2023-06-13	3.2	3.45	3.42	3.4	0.005	1.16	0.0	0.06	18.55	0.01	2.285	5.74	0.51	7.4	91.7	0.8	-3.29	0.74	0.83	2.33	3.4	0.005	0.75	0.0	0.05	18.61	0.00	2.197	11.93	3.66	8.9	90.5	0.6	-1.73	0.48	0.79	0.85	2.28	31608	3868	8	0	0	0	0	logfile
✔	8PDR	17619	2024-04-14	2023-06-12	4.0	4.33	4.07	4.1	0.005	0.61	0.0	0.04	14.93	0.00	0.603	14.55	0.00	1.2	98.8	0.0	0.34	0.63	0.53	—	4.1	0.003	0.68	0.0	0.04	16.92	0.00	2.029	15.31	1.76	2.5	97.5	0.0	1.38	1.88	0.75	0.73	—	32142	3938	33	77	0	0	0	logfile
✔	8PDU	17621	2024-04-09	2023-06-12	3.22	2.33	3.16	2.0	0.008	0.56	0.0	0.04	13.02	0.00	2.221	5.47	0.00	1.3	98.7	0.0	0.82	0.69	0.72	1.94	2.0	0.003	0.58	0.0	0.04	15.39	0.00	2.171	7.56	2.33	2.3	97.7	0.0	1.56	0.58	0.77	0.77	1.22	16210	2044	4	0	2	0	0	logfile
✔	8PDo	17616	2024-04-05	2023-06-12	3.1	3.28	3.06	3.3	0.006	0.66	0.0	0.04	15.62	0.00	2.068	8.31	0.00	1.9	98.1	0.0	0.19	0.60	0.81	3.39	3.3	0.004	0.49	0.0	0.04	16.82	0.00	2.126	8.31	0.84	1.6	98.4	0.0	1.27	0.34	0.59	0.82	2.20	5722	702	3	14	0	0	0	logfile
✔	8T53	41042	2024-04-06	2023-06-12	4.1	4.29	4.68	4.1	0.002	0.59	0.0	0.04	12.60	0.00	2.201	11.96	0.00	1.8	98.2	0.0	0.81	0.45	0.45	—	4.1	0.002	0.60	0.0	0.04	13.37	0.00	2.225	11.66	0.00	2.3	97.7	0.0	1.65	0.60	0.46	0.47	—	6660	796	2	0	0	0	0	logfile
✔	8PD9	17607	2024-04-06	2023-06-12	3.6	2.49	3.49	2.3	0.005	0.73	0.0	0.04	13.44	0.01	2.197	5.39	0.11	2.1	97.9	0.0	2.01	0.64	0.68	1.57	2.2	0.003	0.59	0.0	0.04	16.22	0.00	2.180	6.48	2.16	1.5	98.5	0.0	2.06	1.90	0.73	0.75	1.83	8107	1024	2	0	1	0	0	logfile
✔	8PDS	17620	2024-04-05	2023-06-12	2.9	3.01	2.88	3.0	0.004	0.58	0.0	0.04	15.09	0.00	2.230	7.92	0.16	1.6	98.4	0.0	-0.16	0.68	0.83	3.17	3.0	0.003	0.53	0.0	0.04	17.00	0.00	2.191	7.92	2.84	1.2	98.8	0.0	1.05	0.38	0.68	0.84	2.60	6056	744	5	14	0	0	0	logfile
✔	8PDL	17613	2024-04-13	2023-06-12	3.1	3.30	3.16	3.3	0.009	0.83	0.0	0.06	15.94	0.01	0.922	18.38	0.00	1.7	98.3	0.0	0.63	0.73	0.80	1.93	3.3	0.004	0.61	0.0	0.04	16.77	0.00	2.102	10.48	0.97	2.2	97.8	0.0	1.25	0.42	0.74	0.81	2.10	28610	3510	20	70	0	0	0	logfile
✔	8T56	41043	2024-04-08	2023-06-12	2.8	2.38	2.74	2.9	0.027	1.66	0.0	0.11	14.22	0.01	2.385	1.27	0.00	0.5	99.5	0.0	0.58	0.84	0.87	4.71	2.9	0.003	0.57	0.0	0.04	15.50	0.00	2.276	4.21	1.88	1.0	99.0	0.0	3.19	0.58	0.81	0.87	3.25	13096	1498	18	0	36	0	0	logfile
✔	8JPR	36487	2024-04-07	2023-06-12	3.4	3.63	3.40	3.7	0.003	0.56	0.0	0.04	13.51	0.00	2.111	6.61	0.00	2.2	97.8	0.0	1.04	0.69	0.82	2.53	3.7	0.003	0.57	0.0	0.04	15.33	0.00	2.071	8.01	1.37	2.8	97.1	0.1	1.38	0.66	0.66	0.88	1.92	11396	1460	4	0	8	0	0	logfile
✔	8PDP	17617	2024-04-14	2023-06-12	2.9	3.05	2.91	3.1	0.004	0.58	0.0	0.04	14.90	0.00	0.568	13.90	0.00	1.4	98.6	0.0	0.66	0.73	0.81	2.73	3.1	0.003	0.63	0.0	0.04	16.37	0.00	2.152	10.56	2.03	1.8	98.2	0.0	1.78	0.48	0.71	0.83	2.77	30160	3700	30	70	0	0	0	logfile
✔	8PDV	17622	2024-04-06	2023-06-12	3.26	2.30	3.18	2.1	0.009	0.57	0.0	0.04	13.39	0.00	2.247	4.03	0.11	1.4	98.6	0.0	1.63	0.58	0.75	1.79	2.1	0.004	0.54	0.0	0.04	16.03	0.00	2.202	5.24	2.60	2.5	97.5	0.0	1.45	1.20	0.63	0.79	1.91	8140	1027	2	0	1	0	0	logfile
✔	8PDQ	17618	2024-04-15	2023-06-12	3.1	3.25	3.11	3.2	0.004	0.57	0.0	0.04	15.29	0.00	0.235	15.65	0.00	1.9	98.1	0.0	0.16	0.77	0.82	2.60	3.2	0.004	0.54	0.0	0.04	16.40	0.00	2.151	10.61	1.75	2.5	97.5	0.0	1.46	0.38	0.78	0.83	2.34	33176	4070	33	77	0	0	0	logfile
✔	8PDM	17614	2024-04-14	2023-06-12	3.3	3.51	3.38	3.5	0.006	0.73	0.0	0.05	15.48	0.01	0.279	15.39	0.00	2.0	98.0	0.0	0.75	0.75	0.79	1.66	3.5	0.003	0.59	0.0	0.04	17.31	0.00	2.167	10.45	1.62	2.8	97.2	0.0	1.63	1.22	0.76	0.80	0.86	31471	3861	22	77	0	0	0	logfile
✔	8PDN	17615	2024-04-15	2023-06-12	4.7	4.94	4.72	4.7	0.007	0.66	0.0	0.04	15.88	0.00	0.984	15.88	0.00	1.5	98.5	0.0	0.42	0.64	0.57	—	4.7	0.004	0.81	0.0	0.04	15.86	0.01	1.799	20.03	0.00	1.5	98.5	0.0	0.61	3.80	0.70	0.66	—	33228	4068	24	84	0	0	0	logfile
✔	8PDA	17608	2024-04-06	2023-06-12	3.58	3.92	3.56	3.9	0.006	0.82	0.0	0.05	16.04	0.01	2.217	3.19	0.40	2.7	97.3	0.0	1.89	0.64	0.78	1.73	3.9	0.003	0.55	0.0	0.04	16.18	0.00	2.236	4.71	3.02	4.6	95.4	0.0	2.15	0.28	0.65	0.82	1.43	6736	973	2	0	4	0	0	logfile
✔	8T57	41044	2024-04-06	2023-06-12	2.7	2.45	2.65	3.0	0.027	1.65	0.0	0.12	11.19	0.01	2.385	1.27	0.00	0.8	99.2	0.0	0.77	0.80	0.82	4.03	3.0	0.003	0.59	0.0	0.04	14.08	0.00	2.122	8.18	1.66	1.2	98.8	0.0	1.48	0.58	0.76	0.82	3.03	8466	1008	4	0	20	0	0	logfile
✔	8PD8	17605	2024-04-09	2023-06-12	3.3	2.43	3.21	2.1	0.005	0.85	0.0	0.05	13.01	0.01	2.240	6.27	0.00	2.4	97.6	0.0	0.77	0.68	0.71	1.97	2.1	0.003	0.59	0.0	0.04	15.81	0.00	2.070	7.03	2.23	1.2	98.8	0.0	2.10	1.20	0.77	0.78	1.60	16122	2036	4	0	2	0	0	logfile
✔	8JPJ	36481	2024-04-07	2023-06-12	3.5	3.22	3.01	3.3	0.003	0.58	0.0	0.04	13.48	0.00	2.279	5.13	0.00	3.1	96.9	0.0	1.48	0.51	0.72	2.26	3.3	0.002	0.54	0.0	0.04	16.01	0.00	2.196	5.82	1.91	3.0	96.8	0.1	1.76	1.70	0.71	0.87	2.06	11448	1466	4	0	4	0	0	logfile

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